IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
240	 38.01	0	246587..247228	-	213	22536425	-	SAG0241	-	amino acid ABC transporter, permease protein
241	 34.52	0	247238..248164	-	308	22536426	-	SAG0242	-	amino acid ABC transporter, amino acid-binding protein
242	 35.38	0	248167..248802	-	211	22536427	-	SAG0243	-	amino acid ABC transporter, permease protein
243	 35.69	0	248802..249947	-	381	22536428	-	SAG0244	-	amino acid ABC transporter, ATP-binding protein
244	 29.85	-1	256634..257092	+	152	22536429	-	SAG0245	-	protein of unknown function/lipoprotein, putative
245	 37.55	0	257156..257962	+	268	22536430	-	SAG0246	-	hypothetical protein
246	 35.90	0	258440..258790	+	116	22536431	-	SAG0247	-	hypothetical protein
247	 37.73	0	258809..259081	+	90	22536432	-	SAG0248	-	hypothetical protein
248	 33.33	0	259091..259441	+	116	22536433	-	SAG0249	-	hypothetical protein
249	 27.66	-2	260302..260883	+	193	22536434	-	SAG0250	-	hypothetical protein
250	 31.51	-1	260886..261104	+	72	22536435	-	SAG0251	-	Cro/CI family transcriptional regulator
251	 30.48	-1	261677..262237	+	186	22536436	-	SAG0252	-	acetyltransferase
252	 28.50	-1	262337..262915	+	192	22536437	-	SAG0253	-	acetyltransferase
253	 30.98	-1	262958..263638	+	226	22536438	-	SAG0254	-	acetyltransferase
254	 28.16	-1	263898..264845	-	315	22536439	-	SAG0255	-	hypothetical protein
255	 26.42	-2	264842..265333	-	163	22536440	-	SAG0256	-	ECF subfamily RNA polymerase sigma factor
256	 29.63	-1	265617..265778	+	53	22536441	-	SAG0257	-	putative lipoprotein
257	 28.41	-1	265913..266521	-	202	22536442	-	SAG0258	-	TetR family transcriptional regulator
258	 30.69	-1	266545..267642	-	365	22536443	-	SAG0259	-	ABC transporter
259	 33.61	0	267645..268361	-	238	22536444	-	SAG0260	-	ABC transporter, ATP-binding protein
260	 38.46	0	268657..269046	-	129	22536445	-	SAG0261	-	IS1381 transposase protein B
261	 39.06	0	269079..269462	-	127	22536446	-	SAG0262	-	IS1381 transposase protein A
262	 29.46	-1	269498..270013	-	171	22536447	-	SAG0263	-	hypothetical protein
263	 34.29	0	270190..270501	-	103	22536448	-	SAG0264	-	hypothetical protein
264	 34.60	0	270693..271400	+	235	22536449	-	SAG0265	-	hypothetical protein
265	 40.47	+1	271678..272826	+	382	22536450	nagA	SAG0266	-	N-acetylglucosamine-6-phosphate deacetylase
266	 29.47	-1	272945..273487	+	180	22536451	-	SAG0267	-	hypothetical protein
267	 38.58	0	273800..274714	+	304	22536452	glyQ	SAG0268	-	glycyl-tRNA synthetase subunit alpha
268	 32.24	0	274714..275355	+	213	22536453	-	SAG0269	-	acyl carrier protein phosphodiesterase, putative
269	 36.62	0	275359..277398	+	679	22536454	glyS	SAG0270	-	glycyl-tRNA synthetase subunit beta
270	 40.31	+1	277410..277667	+	85	22536455	-	SAG0271	-	hypothetical protein
271	 32.95	0	277756..278019	+	87	22536456	-	SAG0272	-	hypothetical protein
272	 38.57	0	278134..279642	+	502	22536457	glpK	SAG0273	-	glycerol kinase
273	 38.25	0	279655..281484	+	609	22536458	-	SAG0274	-	alpha-glycerophosphate oxidase
274	 39.77	+1	281496..282194	+	232	22536459	glpF-1	SAG0275	-	glycerol uptake facilitator protein
275	 36.25	0	282282..283619	+	445	22536460	-	SAG0276	-	NADH oxidase, putative
276	 32.84	0	283610..285040	+	476	22536461	-	SAG0277	-	hypothetical protein
277	 41.29	+1	285165..287150	+	661	22536462	tkt	SAG0278	-	transketolase
278	 33.99	0	287363..287668	+	101	22536463	-	SAG0279	-	hypothetical protein
279	 34.97	0	287688..288422	+	244	22536464	-	SAG0280	-	ABC transporter, ATP-binding protein
280	 32.40	0	288426..290030	+	534	22536465	-	SAG0281	-	hypothetical protein
281	 37.09	0	290238..291623	-	461	22536466	-	SAG0282	-	PTS system, IIBC components
282	 36.07	0	291764..292567	+	267	22536467	proB	SAG0283	-	gamma-glutamyl kinase
283	 37.40	0	292577..293830	+	417	22536468	proA	SAG0284	-	gamma-glutamyl phosphate reductase
284	 37.55	0	293913..294860	+	315	161485617	mraW	SAG0285	-	S-adenosyl-methyltransferase MraW
285	 31.19	-1	294875..295201	+	108	22536470	-	SAG0286	-	cell division protein FtsL, putative
286	 36.74	0	295205..297463	+	752	22536471	pbpX	SAG0287	-	penicillin-binding protein 2X
287	 34.92	0	297465..298475	+	336	22536472	mraY	SAG0288	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
288	 36.98	0	298573..299916	+	447	22536473	-	SAG0289	-	DEAD-box ATP dependent DNA helicase
289	 32.60	0	300054..300866	+	270	22536474	-	SAG0290	-	ABC transporter, substrate-binding protein
290	 37.19	0	300961..301764	+	267	22536475	-	SAG0291	-	amino acid ABC transporter, permease protein
291	 35.48	0	301764..302507	+	247	22536476	-	SAG0292	-	amino acid ABC transporter, ATP-binding protein
292	 34.22	0	302629..302853	+	74	22536477	-	SAG0293	-	hypothetical protein
293	 39.67	+1	302922..303836	+	304	22536478	trxB	SAG0294	-	thioredoxin reductase
294	 36.96	0	303994..305454	+	486	22536479	-	SAG0295	-	nicotinate phosphoribosyltransferase
295	 36.98	0	305451..306272	+	273	22536480	nadE	SAG0296	-	NAD synthetase
296	 35.96	0	306385..307719	+	444	22536481	pepC	SAG0297	-	aminopeptidase C
297	 37.59	0	307765..310017	-	750	22536482	pbp1A	SAG0298	-	penicillin-binding protein 1A
298	 34.50	0	310004..310603	-	199	22536483	recU	SAG0299	-	Holliday junction-specific endonuclease
299	 31.41	-1	310678..311196	+	172	22536484	-	SAG0300	-	hypothetical protein
300	 26.02	-2	311177..311299	+	40	22536485	-	SAG0301	-	hypothetical protein
301	 33.33	0	311317..311649	+	110	22536486	-	SAG0302	-	hypothetical protein
302	 37.32	0	312119..313273	+	384	22536487	-	SAG0303	-	hypothetical protein
303	 35.38	0	313286..314749	+	487	22536488	-	SAG0304	-	hypothetical protein
304	 40.58	+1	314974..315456	-	160	22536489	luxS	SAG0305	-	S-ribosylhomocysteinase
305	 38.18	0	315645..317252	+	535	22536490	-	SAG0306	-	hypothetical protein
306	 21.57	-2	317299..317400	+	33	22536491	-	SAG0307	-	hypothetical protein
307	 36.01	0	317381..318277	+	298	22536492	-	SAG0308	-	ABC transporter, ATP-binding protein
308	 34.14	0	318264..319004	+	246	22536493	-	SAG0309	-	hypothetical protein
309	 32.50	0	319001..320086	+	361	22536494	-	SAG0310	-	hypothetical protein
310	 35.04	0	320728..321432	+	234	22536495	-	SAG0312	-	hypothetical protein
311	 40.00	+1	321599..322228	+	209	22536496	gmk	SAG0313	-	guanylate kinase
312	 37.46	0	322251..322565	+	104	22536497	-	SAG0314	-	DNA-directed RNA polymerase subunit omega
313	 35.59	0	322639..325029	+	796	22536498	priA	SAG0315	-	primosome assembly protein PriA
314	 39.53	+1	325076..326011	+	311	22536499	fmt	SAG0316	-	methionyl-tRNA formyltransferase
315	 36.13	0	326001..327323	+	440	22536500	sun	SAG0317	-	sun protein
316	 37.13	0	327361..328098	+	245	22536501	-	SAG0318	-	serine/threonine phosphatase, putative
317	 37.53	0	328098..330053	+	651	22536502	-	SAG0319	-	serine/threonine protein kinase
318	 30.17	-1	330214..330909	+	231	22536503	-	SAG0320	-	hypothetical protein
319	 33.24	0	330906..331925	+	339	22536504	-	SAG0321	-	sensor histidine kinase, putative
320	 35.98	0	331918..332559	+	213	22536505	-	SAG0322	-	DNA-binding response regulator
321	 37.54	0	332601..334001	+	466	22536506	-	SAG0323	-	peptidyl-prolyl cis-trans isomerase
322	 35.47	0	333985..334359	+	124	22536507	-	SAG0324	-	hypothetical protein
323	 35.65	0	334406..335182	-	258	22536508	pflA-1	SAG0325	-	pyruvate formate-lyase-activating enzyme
324	 35.19	0	335303..336058	+	251	22536509	-	SAG0326	-	DeoR family transcriptional regulator
325	 35.57	0	336177..337160	+	327	22536510	-	SAG0327	-	transcriptional regulator, putative
326	 34.57	0	337364..337687	+	107	22536511	celC	SAG0328	-	PTS system, cellobiose-specific IIA component
327	 34.27	0	337704..338024	+	106	22536512	-	SAG0329	-	PTS system, cellobiose-specific IIB component
328	 36.71	0	338026..339327	+	433	22536513	celB	SAG0330	-	PTS system, cellobiose-specific IIC component
329	 37.73	0	339508..341964	+	818	22536514	pflD-1	SAG0331	-	formate acetyltransferase
330	 38.57	0	341974..342642	+	222	22536515	-	SAG0332	-	fructose-6-phosphate aldolase
331	 38.48	0	342710..343798	+	362	22536516	gldA	SAG0333	-	glycerol dehydrogenase
332	 39.70	+1	343950..344876	-	308	22536517	cysK	SAG0334	-	cysteine synthase A
333	 38.29	0	344967..345611	-	214	22536518	-	SAG0335	-	hypothetical protein
334	 35.19	0	345667..346956	+	429	22536519	-	SAG0336	-	helicase, putative
335	 31.23	-1	346956..347621	+	221	22536520	-	SAG0337	-	competence protein F, putative
336	 33.33	0	347698..348252	+	184	22536521	yfiA	SAG0338	-	ribosomal subunit interface protein
337	 34.81	0	353792..355144	-	450	22536522	-	SAG0339	-	aspartate kinase
338	 32.26	0	355238..355888	+	216	22536523	-	SAG0340	-	HAD superfamily hydrolase
339	 24.00	-2	355874..356023	-	49	22536524	-	SAG0341	-	hypothetical protein
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.