IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
192	 36.41	0	211466..213091	+	541	22536377	-	SAG0193	-	alpha amylase family protein
193	 34.58	0	213307..215226	+	639	22536378	-	SAG0194	-	BglG family transcriptional antiterminator
194	 38.01	0	215240..216373	-	377	22536379	-	SAG0195	-	IS1548 transposase
195	 31.84	0	216468..216668	+	66	22536380	-	SAG0196	-	hypothetical protein
196	 37.89	0	216671..216955	+	94	22536381	-	SAG0197	-	PTS system, IIB component, putative
197	 38.64	0	216968..218323	+	451	22536382	ulaA	SAG0198	-	ascorbate-specific PTS system enzyme IIC
198	 36.13	0	218326..219183	+	285	22536383	-	SAG0199	-	transketolase, N-terminal subunit
199	 38.49	0	219180..220109	+	309	22536384	-	SAG0200	-	transketolase, C-terminal subunit
200	 32.46	0	220218..221477	+	419	22536385	-	SAG0201	-	oxidoreductase, putative
201	 38.89	0	221565..221834	+	89	22536386	rpsO	SAG0202	-	30S ribosomal protein S15
202	 40.19	+1	222215..224344	+	709	22536387	pnp	SAG0203	-	polynucleotide phosphorylase/polyadenylase
203	 37.05	0	224346..225098	+	250	22536388	-	SAG0204	-	hypothetical protein
204	 41.54	+1	225107..225691	+	194	22536389	cysE	SAG0205	-	serine O-acetyltransferase
205	 31.69	0	225701..225883	+	60	22536390	-	SAG0206	-	putative lipoprotein
206	 35.49	0	225880..227223	+	447	22536391	cysS	SAG0207	-	cysteinyl-tRNA synthetase
207	 34.63	0	227216..227602	+	128	22536392	-	SAG0208	-	hypothetical protein
208	 37.57	0	227705..228460	+	251	22536393	-	SAG0209	-	RNA methyltransferase
209	 37.19	0	228457..228975	+	172	22536394	-	SAG0210	-	hypothetical protein
210	 37.86	0	229068..229928	+	286	22536395	-	SAG0211	-	DegV family protein
211	 28.28	-1	230061..230159	+	32	22536396	-	SAG0212	-	hypothetical protein
212	 34.17	0	230273..230392	+	39	22536397	-	SAG0213	-	hypothetical protein
213	 39.60	+1	230809..231255	+	148	22536398	rplM	SAG0214	-	50S ribosomal protein L13
214	 43.77	+2	231276..231668	+	130	22536399	rpsI	SAG0215	-	30S ribosomal protein S9
215	 35.29	0	231682..231783	-	33	22536400	-	SAG0216	-	hypothetical protein
216	 39.39	+1	231796..232950	-	384	22536401	-	SAG0217	-	phage integrase family site specific recombinase
217	 29.56	-1	233015..233491	-	158	22536402	-	SAG0218	-	Cro/CI family transcriptional regulator
218	 33.66	0	233645..233950	+	101	22536403	-	SAG0219	-	hypothetical protein
219	 42.29	+1	234087..234365	+	92	22536404	-	SAG0220	-	hypothetical protein
220	 34.20	0	234376..234606	+	76	22536405	-	SAG0221	-	hypothetical protein
221	 33.94	0	234619..234945	+	108	22536406	-	SAG0222	-	hypothetical protein
222	 35.87	0	234949..235578	+	209	22536407	-	SAG0223	-	hypothetical protein
223	 37.24	0	235768..236766	+	332	22536408	-	SAG0224	-	replication initiation protein, putative
224	 34.48	0	236802..237236	+	144	22536409	-	SAG0225	-	hypothetical protein
225	 33.41	0	237552..238808	+	418	22536410	-	SAG0226	-	recombination protein
226	 31.63	-1	238976..239446	+	156	22536411	-	SAG0227	-	hypothetical protein
227	 34.52	0	239751..240086	-	111	22536412	-	SAG0228	-	hypothetical protein
228	 33.68	0	240076..240363	-	95	22536413	-	SAG0229	-	hypothetical protein
229	 31.62	-1	240870..241160	+	96	22536414	-	SAG0230	-	hypothetical protein
230	 25.25	-2	241262..241669	+	135	22536415	-	SAG0231	-	hypothetical protein
231	 33.69	0	241669..242229	+	186	22536416	-	SAG0232	-	hypothetical protein
232	 33.04	0	242202..242882	+	226	22536417	-	SAG0233	-	hypothetical protein
233	 29.20	-1	242867..243253	+	128	22536418	-	SAG0234	-	hypothetical protein
234	 32.62	0	243287..243568	+	93	22536419	-	SAG0235	-	hypothetical protein
235	 19.19	-2	243659..243757	+	32	22536420	-	SAG0236	-	hypothetical protein
236	 28.57	-1	244185..244289	+	34	22536421	-	SAG0237	-	hypothetical protein
237	 23.81	-2	244286..244411	+	41	22536422	-	SAG0238	-	hypothetical protein
238	 33.57	0	244411..245271	+	286	22536423	-	SAG0239	-	MutR family transcriptional regulator
239	 31.64	-1	245344..246525	+	393	22536424	-	SAG0240	-	transporter, putative
240	 38.01	0	246587..247228	-	213	22536425	-	SAG0241	-	amino acid ABC transporter, permease protein
241	 34.52	0	247238..248164	-	308	22536426	-	SAG0242	-	amino acid ABC transporter, amino acid-binding protein
242	 35.38	0	248167..248802	-	211	22536427	-	SAG0243	-	amino acid ABC transporter, permease protein
243	 35.69	0	248802..249947	-	381	22536428	-	SAG0244	-	amino acid ABC transporter, ATP-binding protein
244	 29.85	-1	256634..257092	+	152	22536429	-	SAG0245	-	protein of unknown function/lipoprotein, putative
245	 37.55	0	257156..257962	+	268	22536430	-	SAG0246	-	hypothetical protein
246	 35.90	0	258440..258790	+	116	22536431	-	SAG0247	-	hypothetical protein
247	 37.73	0	258809..259081	+	90	22536432	-	SAG0248	-	hypothetical protein
248	 33.33	0	259091..259441	+	116	22536433	-	SAG0249	-	hypothetical protein
249	 27.66	-2	260302..260883	+	193	22536434	-	SAG0250	-	hypothetical protein
250	 31.51	-1	260886..261104	+	72	22536435	-	SAG0251	-	Cro/CI family transcriptional regulator
251	 30.48	-1	261677..262237	+	186	22536436	-	SAG0252	-	acetyltransferase
252	 28.50	-1	262337..262915	+	192	22536437	-	SAG0253	-	acetyltransferase
253	 30.98	-1	262958..263638	+	226	22536438	-	SAG0254	-	acetyltransferase
254	 28.16	-1	263898..264845	-	315	22536439	-	SAG0255	-	hypothetical protein
255	 26.42	-2	264842..265333	-	163	22536440	-	SAG0256	-	ECF subfamily RNA polymerase sigma factor
256	 29.63	-1	265617..265778	+	53	22536441	-	SAG0257	-	putative lipoprotein
257	 28.41	-1	265913..266521	-	202	22536442	-	SAG0258	-	TetR family transcriptional regulator
258	 30.69	-1	266545..267642	-	365	22536443	-	SAG0259	-	ABC transporter
259	 33.61	0	267645..268361	-	238	22536444	-	SAG0260	-	ABC transporter, ATP-binding protein
260	 38.46	0	268657..269046	-	129	22536445	-	SAG0261	-	IS1381 transposase protein B
261	 39.06	0	269079..269462	-	127	22536446	-	SAG0262	-	IS1381 transposase protein A
262	 29.46	-1	269498..270013	-	171	22536447	-	SAG0263	-	hypothetical protein
263	 34.29	0	270190..270501	-	103	22536448	-	SAG0264	-	hypothetical protein
264	 34.60	0	270693..271400	+	235	22536449	-	SAG0265	-	hypothetical protein
265	 40.47	+1	271678..272826	+	382	22536450	nagA	SAG0266	-	N-acetylglucosamine-6-phosphate deacetylase
266	 29.47	-1	272945..273487	+	180	22536451	-	SAG0267	-	hypothetical protein
267	 38.58	0	273800..274714	+	304	22536452	glyQ	SAG0268	-	glycyl-tRNA synthetase subunit alpha
268	 32.24	0	274714..275355	+	213	22536453	-	SAG0269	-	acyl carrier protein phosphodiesterase, putative
269	 36.62	0	275359..277398	+	679	22536454	glyS	SAG0270	-	glycyl-tRNA synthetase subunit beta
270	 40.31	+1	277410..277667	+	85	22536455	-	SAG0271	-	hypothetical protein
271	 32.95	0	277756..278019	+	87	22536456	-	SAG0272	-	hypothetical protein
272	 38.57	0	278134..279642	+	502	22536457	glpK	SAG0273	-	glycerol kinase
273	 38.25	0	279655..281484	+	609	22536458	-	SAG0274	-	alpha-glycerophosphate oxidase
274	 39.77	+1	281496..282194	+	232	22536459	glpF-1	SAG0275	-	glycerol uptake facilitator protein
275	 36.25	0	282282..283619	+	445	22536460	-	SAG0276	-	NADH oxidase, putative
276	 32.84	0	283610..285040	+	476	22536461	-	SAG0277	-	hypothetical protein
277	 41.29	+1	285165..287150	+	661	22536462	tkt	SAG0278	-	transketolase
278	 33.99	0	287363..287668	+	101	22536463	-	SAG0279	-	hypothetical protein
279	 34.97	0	287688..288422	+	244	22536464	-	SAG0280	-	ABC transporter, ATP-binding protein
280	 32.40	0	288426..290030	+	534	22536465	-	SAG0281	-	hypothetical protein
281	 37.09	0	290238..291623	-	461	22536466	-	SAG0282	-	PTS system, IIBC components
282	 36.07	0	291764..292567	+	267	22536467	proB	SAG0283	-	gamma-glutamyl kinase
283	 37.40	0	292577..293830	+	417	22536468	proA	SAG0284	-	gamma-glutamyl phosphate reductase
284	 37.55	0	293913..294860	+	315	161485617	mraW	SAG0285	-	S-adenosyl-methyltransferase MraW
285	 31.19	-1	294875..295201	+	108	22536470	-	SAG0286	-	cell division protein FtsL, putative
286	 36.74	0	295205..297463	+	752	22536471	pbpX	SAG0287	-	penicillin-binding protein 2X
287	 34.92	0	297465..298475	+	336	22536472	mraY	SAG0288	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
288	 36.98	0	298573..299916	+	447	22536473	-	SAG0289	-	DEAD-box ATP dependent DNA helicase
289	 32.60	0	300054..300866	+	270	22536474	-	SAG0290	-	ABC transporter, substrate-binding protein
290	 37.19	0	300961..301764	+	267	22536475	-	SAG0291	-	amino acid ABC transporter, permease protein
291	 35.48	0	301764..302507	+	247	22536476	-	SAG0292	-	amino acid ABC transporter, ATP-binding protein
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.