IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
161	 35.79	0	186744..187109	+	121	22536346	-	SAG0162	-	hypothetical protein
162	 35.80	0	187282..188253	+	323	22536347	cglA	SAG0163	-	competence protein CglA
163	 31.33	-1	188342..189190	+	282	22536348	cglB	SAG0164	-	competence protein CglB
164	 32.46	0	189187..189642	+	151	22536349	-	SAG0165	-	hypothetical protein
165	 34.14	0	189620..189991	+	123	22536350	-	SAG0166	-	hypothetical protein
166	 34.26	0	190106..191080	+	324	22536351	-	SAG0167	-	hypothetical protein
167	 36.77	0	191112..192305	+	397	22536352	ackA	SAG0168	-	acetate kinase
168	 32.85	0	192457..192663	+	68	22536353	-	SAG0169	-	Cro/CI family transcriptional regulator
169	 31.16	-1	192722..192859	+	45	22536354	-	SAG0170	-	hypothetical protein
170	 28.07	-1	192900..193355	+	151	22536355	-	SAG0171	-	hypothetical protein
171	 30.93	-1	193424..194089	+	221	22536356	-	SAG0172	-	protease, putative
172	 36.84	0	194110..194880	-	256	22536357	proC	SAG0173	-	pyrroline-5-carboxylate reductase
173	 40.07	+1	194950..196017	-	355	22536358	pepA	SAG0174	-	glutamyl-aminopeptidase
174	 30.42	-1	196202..196441	-	79	22536359	-	SAG0175	-	hypothetical protein
175	 35.09	0	196602..196886	+	94	22536360	-	SAG0176	-	hypothetical protein
176	 32.72	0	196883..197206	+	107	22536361	-	SAG0177	-	thioredoxin family protein
177	 37.96	0	197239..197865	+	208	22536362	-	SAG0178	-	tRNA-binding domain-containing protein
178	 32.08	0	197919..198635	-	238	22536363	-	SAG0179	-	hypothetical protein
179	 41.67	+1	198716..199111	+	131	22536364	ssb-1	SAG0180	-	single-strand DNA-binding protein
180	 40.00	+1	199235..199879	+	214	22536365	-	SAG0181	-	HAD superfamily hydrolase
181	 36.77	0	199906..201651	+	581	22536366	-	SAG0182	-	sensor histidine kinase, putative
182	 35.90	0	201632..202372	+	246	22536367	-	SAG0183	-	response regulator
183	 34.65	0	202542..202997	+	151	22536368	-	SAG0184	-	hypothetical protein
184	 36.90	0	202999..203727	+	242	22536369	-	SAG0185	-	hypothetical protein
185	 18.02	-2	203839..203949	-	36	22536370	-	SAG0186	-	hypothetical protein
186	 37.75	0	203970..205598	+	542	22536371	-	SAG0187	-	oligopeptide ABC transporter, oligopeptide-binding protein
187	 38.34	0	205711..206688	+	325	22536372	-	SAG0188	-	oligopeptide ABC transporter, permease protein
188	 37.47	0	206685..207506	+	273	22536373	-	SAG0189	-	oligopeptide ABC transporter, permease protein
189	 36.82	0	207518..208321	+	267	22536374	-	SAG0190	-	peptide ABC transporter, ATP-binding protein
190	 35.89	0	208305..208931	+	208	22536375	-	SAG0191	-	peptide ABC transporter, ATP-binding protein
191	 38.36	0	209214..211244	+	676	22536376	-	SAG0192	-	PTS system, IIABC components
192	 36.41	0	211466..213091	+	541	22536377	-	SAG0193	-	alpha amylase family protein
193	 34.58	0	213307..215226	+	639	22536378	-	SAG0194	-	BglG family transcriptional antiterminator
194	 38.01	0	215240..216373	-	377	22536379	-	SAG0195	-	IS1548 transposase
195	 31.84	0	216468..216668	+	66	22536380	-	SAG0196	-	hypothetical protein
196	 37.89	0	216671..216955	+	94	22536381	-	SAG0197	-	PTS system, IIB component, putative
197	 38.64	0	216968..218323	+	451	22536382	ulaA	SAG0198	-	ascorbate-specific PTS system enzyme IIC
198	 36.13	0	218326..219183	+	285	22536383	-	SAG0199	-	transketolase, N-terminal subunit
199	 38.49	0	219180..220109	+	309	22536384	-	SAG0200	-	transketolase, C-terminal subunit
200	 32.46	0	220218..221477	+	419	22536385	-	SAG0201	-	oxidoreductase, putative
201	 38.89	0	221565..221834	+	89	22536386	rpsO	SAG0202	-	30S ribosomal protein S15
202	 40.19	+1	222215..224344	+	709	22536387	pnp	SAG0203	-	polynucleotide phosphorylase/polyadenylase
203	 37.05	0	224346..225098	+	250	22536388	-	SAG0204	-	hypothetical protein
204	 41.54	+1	225107..225691	+	194	22536389	cysE	SAG0205	-	serine O-acetyltransferase
205	 31.69	0	225701..225883	+	60	22536390	-	SAG0206	-	putative lipoprotein
206	 35.49	0	225880..227223	+	447	22536391	cysS	SAG0207	-	cysteinyl-tRNA synthetase
207	 34.63	0	227216..227602	+	128	22536392	-	SAG0208	-	hypothetical protein
208	 37.57	0	227705..228460	+	251	22536393	-	SAG0209	-	RNA methyltransferase
209	 37.19	0	228457..228975	+	172	22536394	-	SAG0210	-	hypothetical protein
210	 37.86	0	229068..229928	+	286	22536395	-	SAG0211	-	DegV family protein
211	 28.28	-1	230061..230159	+	32	22536396	-	SAG0212	-	hypothetical protein
212	 34.17	0	230273..230392	+	39	22536397	-	SAG0213	-	hypothetical protein
213	 39.60	+1	230809..231255	+	148	22536398	rplM	SAG0214	-	50S ribosomal protein L13
214	 43.77	+2	231276..231668	+	130	22536399	rpsI	SAG0215	-	30S ribosomal protein S9
215	 35.29	0	231682..231783	-	33	22536400	-	SAG0216	-	hypothetical protein
216	 39.39	+1	231796..232950	-	384	22536401	-	SAG0217	-	phage integrase family site specific recombinase
217	 29.56	-1	233015..233491	-	158	22536402	-	SAG0218	-	Cro/CI family transcriptional regulator
218	 33.66	0	233645..233950	+	101	22536403	-	SAG0219	-	hypothetical protein
219	 42.29	+1	234087..234365	+	92	22536404	-	SAG0220	-	hypothetical protein
220	 34.20	0	234376..234606	+	76	22536405	-	SAG0221	-	hypothetical protein
221	 33.94	0	234619..234945	+	108	22536406	-	SAG0222	-	hypothetical protein
222	 35.87	0	234949..235578	+	209	22536407	-	SAG0223	-	hypothetical protein
223	 37.24	0	235768..236766	+	332	22536408	-	SAG0224	-	replication initiation protein, putative
224	 34.48	0	236802..237236	+	144	22536409	-	SAG0225	-	hypothetical protein
225	 33.41	0	237552..238808	+	418	22536410	-	SAG0226	-	recombination protein
226	 31.63	-1	238976..239446	+	156	22536411	-	SAG0227	-	hypothetical protein
227	 34.52	0	239751..240086	-	111	22536412	-	SAG0228	-	hypothetical protein
228	 33.68	0	240076..240363	-	95	22536413	-	SAG0229	-	hypothetical protein
229	 31.62	-1	240870..241160	+	96	22536414	-	SAG0230	-	hypothetical protein
230	 25.25	-2	241262..241669	+	135	22536415	-	SAG0231	-	hypothetical protein
231	 33.69	0	241669..242229	+	186	22536416	-	SAG0232	-	hypothetical protein
232	 33.04	0	242202..242882	+	226	22536417	-	SAG0233	-	hypothetical protein
233	 29.20	-1	242867..243253	+	128	22536418	-	SAG0234	-	hypothetical protein
234	 32.62	0	243287..243568	+	93	22536419	-	SAG0235	-	hypothetical protein
235	 19.19	-2	243659..243757	+	32	22536420	-	SAG0236	-	hypothetical protein
236	 28.57	-1	244185..244289	+	34	22536421	-	SAG0237	-	hypothetical protein
237	 23.81	-2	244286..244411	+	41	22536422	-	SAG0238	-	hypothetical protein
238	 33.57	0	244411..245271	+	286	22536423	-	SAG0239	-	MutR family transcriptional regulator
239	 31.64	-1	245344..246525	+	393	22536424	-	SAG0240	-	transporter, putative
240	 38.01	0	246587..247228	-	213	22536425	-	SAG0241	-	amino acid ABC transporter, permease protein
241	 34.52	0	247238..248164	-	308	22536426	-	SAG0242	-	amino acid ABC transporter, amino acid-binding protein
242	 35.38	0	248167..248802	-	211	22536427	-	SAG0243	-	amino acid ABC transporter, permease protein
243	 35.69	0	248802..249947	-	381	22536428	-	SAG0244	-	amino acid ABC transporter, ATP-binding protein
244	 29.85	-1	256634..257092	+	152	22536429	-	SAG0245	-	protein of unknown function/lipoprotein, putative
245	 37.55	0	257156..257962	+	268	22536430	-	SAG0246	-	hypothetical protein
246	 35.90	0	258440..258790	+	116	22536431	-	SAG0247	-	hypothetical protein
247	 37.73	0	258809..259081	+	90	22536432	-	SAG0248	-	hypothetical protein
248	 33.33	0	259091..259441	+	116	22536433	-	SAG0249	-	hypothetical protein
249	 27.66	-2	260302..260883	+	193	22536434	-	SAG0250	-	hypothetical protein
250	 31.51	-1	260886..261104	+	72	22536435	-	SAG0251	-	Cro/CI family transcriptional regulator
251	 30.48	-1	261677..262237	+	186	22536436	-	SAG0252	-	acetyltransferase
252	 28.50	-1	262337..262915	+	192	22536437	-	SAG0253	-	acetyltransferase
253	 30.98	-1	262958..263638	+	226	22536438	-	SAG0254	-	acetyltransferase
254	 28.16	-1	263898..264845	-	315	22536439	-	SAG0255	-	hypothetical protein
255	 26.42	-2	264842..265333	-	163	22536440	-	SAG0256	-	ECF subfamily RNA polymerase sigma factor
256	 29.63	-1	265617..265778	+	53	22536441	-	SAG0257	-	putative lipoprotein
257	 28.41	-1	265913..266521	-	202	22536442	-	SAG0258	-	TetR family transcriptional regulator
258	 30.69	-1	266545..267642	-	365	22536443	-	SAG0259	-	ABC transporter
259	 33.61	0	267645..268361	-	238	22536444	-	SAG0260	-	ABC transporter, ATP-binding protein
260	 38.46	0	268657..269046	-	129	22536445	-	SAG0261	-	IS1381 transposase protein B
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.