IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1983	 29.24	-1	2009125..2009613	-	162	22538168	-	SAG2033	-	acetyltransferase
1984	 29.57	-1	2009782..2010525	-	247	22538169	-	SAG2034	-	hypothetical protein
1985	 32.78	0	2010540..2011442	-	300	22538170	-	SAG2035	-	ABC transporter, ATP-binding protein
1986	 29.95	-1	2011439..2011645	-	68	22538171	-	SAG2036	-	hypothetical protein
1987	 31.94	0	2011647..2012723	-	358	22538172	-	SAG2037	-	Cro/CI family transcriptional regulator
1988	 32.03	0	2012972..2013586	-	204	22538173	-	SAG2038	-	PAP2 family protein
1989	 33.33	0	2013800..2014096	+	98	22538174	-	SAG2039	-	hypothetical protein
1990	 36.72	0	2014113..2014673	+	186	22538175	-	SAG2040	-	hypothetical protein
1991	 32.18	0	2014978..2015841	+	287	22538176	-	SAG2041	-	protease, putative
1992	 37.62	0	2015998..2016300	-	100	22538177	-	SAG2042	-	rhodanese-like domain-containing protein
1993	 33.33	0	2016473..2017240	-	255	22538178	cfb	SAG2043	-	cAMP factor
1994	 20.63	-2	2017460..2017648	-	62	22538179	-	SAG2044	-	hypothetical protein
1995	 35.93	0	2018009..2018548	+	179	22538180	-	SAG2045	-	topology modulation protein
1996	 39.13	0	2018749..2019834	+	361	22538181	-	SAG2046	-	glycerol dehydrogenase, putative
1997	 34.04	0	2019999..2020706	-	235	22538182	-	SAG2047	-	hypothetical protein
1998	 35.66	0	2021053..2022897	-	614	22538183	-	SAG2048	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
1999	 37.22	0	2022942..2025179	-	745	22538184	metE	SAG2049	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
2000	 31.17	-1	2025549..2025872	-	107	22538185	-	SAG2050	-	hypothetical protein
2001	 37.81	0	2025862..2026554	-	230	22538186	-	SAG2051	-	branched-chain amino acid transport protein AzlC, putative
2002	 21.43	-2	2026789..2026914	+	41	22538187	-	SAG2052	-	hypothetical protein
2003	 36.62	0	2026877..2031589	+	1570	22538188	-	SAG2053	-	serine protease
2004	 33.62	0	2031822..2032508	+	228	22538189	-	SAG2054	-	DNA-binding response regulator
2005	 33.33	0	2032505..2033893	+	462	22538190	-	SAG2055	-	sensor histidine kinase
2006	 29.56	-1	2033986..2034594	+	202	22538191	-	SAG2056	-	hypothetical protein
2007	 45.92	+2	2034681..2037182	-	833	22538192	leuS	SAG2057	-	leucyl-tRNA synthetase
2008	 38.54	0	2037559..2038806	+	415	22538193	-	SAG2058	-	major facilitator family protein
2009	 35.82	0	2038849..2039694	-	281	22538194	-	SAG2059	-	hypothetical protein
2010	 32.41	0	2039899..2041095	+	398	22538195	-	SAG2060	-	glycosyl transferase family protein
2011	 31.51	-1	2041160..2042365	+	401	22538196	-	SAG2061	-	glycosyl transferase family protein
2012	 36.85	0	2042412..2042951	-	179	22538197	nusG	SAG2062	-	transcription antitermination protein NusG
2013	 36.61	0	2043157..2045049	-	630	22538198	-	SAG2063	-	pathogenicity protein, putative
2014	 35.06	0	2045361..2045534	-	57	22538199	secE	SAG2064	-	preprotein translocase subunit SecE
2015	 39.22	0	2045570..2045722	-	50	22538200	rpmG	SAG2065	-	50S ribosomal protein L33
2016	 36.48	0	2045771..2048092	-	773	22538201	pbp2A	SAG2066	-	penicillin-binding protein 2A
2017	 35.48	0	2048136..2049020	+	294	22538202	-	SAG2067	-	ribosomal large subunit pseudouridine synthase D
2018	 33.46	0	2049045..2050685	-	546	22538203	-	SAG2068	-	hypothetical protein
2019	 41.67	+1	2050855..2052066	-	403	22538204	deoB-2	SAG2069	-	phosphopentomutase
2020	 37.20	0	2052133..2052804	-	223	22538205	deoC	SAG2070	-	deoxyribose-phosphate aldolase
2021	 35.83	0	2052834..2054036	-	400	22538206	-	SAG2071	-	Na+ dependent nucleoside transporter
2022	 40.90	+1	2054057..2054836	-	259	22538207	udp	SAG2072	-	uridine phosphorylase
2023	 34.15	0	2054994..2055731	+	245	22538208	-	SAG2073	-	GntR family transcriptional regulator
2024	 40.73	+1	2056140..2057762	-	540	22538209	groEL	SAG2074	-	chaperonin GroEL
2025	 43.51	+2	2057858..2058142	-	94	22538210	groES	SAG2075	-	co-chaperonin GroES
2026	 38.68	0	2058317..2059120	-	267	22538211	-	SAG2076	-	ABC transporter, ATP-binding protein
2027	 36.01	0	2059125..2060021	-	298	22538212	-	SAG2077	-	ABC transporter, permease protein
2028	 35.20	0	2060037..2060999	-	320	22538213	-	SAG2078	-	protein of unknown function/lipoprotein, putative
2029	 34.46	0	2061464..2062261	-	265	22538214	-	SAG2079	-	HAD superfamily hydrolase
2030	 34.49	0	2062447..2063307	+	286	22538215	-	SAG2080	-	glyoxalase family protein
2031	 32.38	0	2063350..2064081	+	243	22538216	-	SAG2081	-	hypothetical protein
2032	 37.06	0	2064438..2065055	-	205	22538217	nrdG	SAG2082	-	anaerobic ribonucleoside-triphosphate reductase activating protein
2033	 35.57	0	2065128..2065619	-	163	22538218	-	SAG2083	-	acetyltransferase
2034	 36.23	0	2065628..2066560	-	310	22538219	-	SAG2084	-	virulence factor MviM, putative
2035	 34.72	0	2066573..2066716	-	47	22538220	-	SAG2085	-	hypothetical protein
2036	 36.60	0	2066791..2068962	-	723	22538221	nrdD	SAG2086	-	anaerobic ribonucleoside triphosphate reductase
2037	 31.99	0	2069088..2070575	-	495	22538222	-	SAG2087	-	hypothetical protein
2038	 31.71	0	2070675..2070797	-	40	22538223	-	SAG2088	-	hypothetical protein
2039	 38.99	0	2070879..2071196	-	105	22538224	-	SAG2089	-	hypothetical protein
2040	 37.71	0	2071222..2071632	-	136	22538225	-	SAG2090	-	Holliday junction resolvase-like protein
2041	 33.71	0	2071641..2071907	-	88	22538226	-	SAG2091	-	hypothetical protein
2042	 32.33	0	2072109..2072507	-	132	22538227	spxA	SAG2092	-	transcriptional regulator Spx
2043	 39.65	+1	2072723..2073862	-	379	22538228	recA	SAG2093	-	recombinase A
2044	 34.78	0	2075285..2075836	-	183	22538229	tag	SAG2095	-	DNA-3-methyladenine glycosylase I
2045	 35.36	0	2075859..2076449	-	196	22538230	ruvA	SAG2096	-	Holliday junction DNA helicase motor protein
2046	 35.48	0	2076451..2077707	-	418	22538231	-	SAG2097	-	transporter, putative
2047	 35.71	0	2077715..2079694	-	659	22538232	mutL	SAG2098	-	DNA mismatch repair protein
2048	 23.53	-2	2079819..2079920	-	33	22538233	-	SAG2099	-	hypothetical protein
2049	 34.80	0	2079914..2080117	+	67	22538234	-	SAG2100	-	CSD family cold shock protein
2050	 37.76	0	2080174..2082750	-	858	22538235	hexA	SAG2101	-	DNA mismatch repair protein
2051	 35.39	0	2082807..2083244	-	145	22538236	-	SAG2102	-	arginine repressor ArgR, putative
2052	 38.12	0	2083466..2085157	+	563	22538237	argS	SAG2103	-	arginyl-tRNA synthetase
2053	 35.28	0	2085245..2085553	+	102	22538238	-	SAG2104	-	hypothetical protein
2054	 35.17	0	2085580..2086452	-	290	22538239	-	SAG2105	-	hypothetical protein
2055	 33.23	0	2086560..2087504	-	314	22538240	-	SAG2106	-	hypothetical protein
2056	 39.44	+1	2087494..2089245	-	583	22538241	aspS	SAG2107	-	aspartyl-tRNA synthetase
2057	 35.91	0	2089338..2090618	-	426	22538242	hisS	SAG2108	-	histidyl-tRNA synthetase
2058	 40.98	+1	2090838..2091020	+	60	22538243	rpmF	SAG2109	-	50S ribosomal protein L32
2059	 34.00	0	2091036..2091185	+	49	22538244	rpmG	SAG2110	-	50S ribosomal protein L33
2060	 36.21	0	2091333..2091854	-	173	22538245	-	SAG2111	-	hypothetical protein
2061	 40.67	+1	2091952..2093436	-	494	22538246	-	SAG2112	-	phage integrase family site specific recombinase
2062	 42.97	+1	2093446..2093694	-	82	22538247	-	SAG2113	-	hypothetical protein
2063	 41.50	+1	2093760..2094788	-	342	22538248	-	SAG2114	-	hypothetical protein
2064	 39.58	+1	2094791..2095222	-	143	22538249	-	SAG2115	-	hypothetical protein
2065	 38.16	0	2095498..2095953	-	151	22538250	-	SAG2116	-	hypothetical protein
2066	 40.28	+1	2095953..2096168	-	71	22538251	-	SAG2117	-	hypothetical protein
2067	 35.18	0	2096491..2097411	+	306	22538252	-	SAG2118	-	Cro/CI family transcriptional regulator
2068	 34.85	0	2097432..2098553	+	373	22538253	-	SAG2119	-	hypothetical protein
2069	 30.99	-1	2098781..2099590	+	269	22538254	-	SAG2120	-	hypothetical protein
2070	 30.51	-1	2100041..2100712	+	223	22538255	-	SAG2121	-	hypothetical protein
2071	 36.01	0	2100797..2101468	+	223	22538256	-	SAG2122	-	DNA-binding response regulator
2072	 32.89	0	2101452..2102816	+	454	22538257	-	SAG2123	-	sensor histidine kinase
2073	 36.16	0	2102926..2104479	-	517	22538258	-	SAG2124	-	hypothetical protein
2074	 37.22	0	2104573..2105499	-	308	22538259	arcC-1	SAG2125	-	carbamate kinase
2075	 37.64	0	2105511..2106509	-	332	22538260	argF-1	SAG2126	-	ornithine carbamoyltransferase
2076	 30.94	-1	2106612..2107907	+	431	22538261	-	SAG2127	-	sensor histidine kinase
2077	 29.74	-1	2107904..2108737	+	277	22538262	-	SAG2128	-	response regulator
2078	 38.59	0	2108959..2109681	+	240	22538263	-	SAG2129	-	amino acid ABC transporter, ATP-binding protein
2079	 34.92	0	2109684..2111198	+	504	22538264	-	SAG2130	-	amino acid ABC transporter, amino acid-binding protein/permease protein
2080	 34.16	0	2111277..2113820	-	847	22538265	-	SAG2131	-	hypothetical protein
2081	 34.54	0	2113801..2114544	-	247	22538266	-	SAG2132	-	hypothetical protein
2082	 29.69	-1	2114678..2115034	-	118	22538267	-	SAG2133	-	hypothetical protein
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.