IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1953	 38.46	0	1983230..1983619	-	129	22538138	-	SAG2002	-	IS1381 transposase protein B
1954	 39.06	0	1983652..1984035	-	127	22538139	-	SAG2003	-	IS1381 transposase protein A
1955	 32.60	0	1984296..1984706	-	136	22538140	-	SAG2005	-	hypothetical protein
1956	 33.71	0	1984717..1984983	-	88	22538141	-	SAG2006	-	hypothetical protein
1957	 30.19	-1	1985004..1985957	-	317	22538142	-	SAG2007	-	hypothetical protein
1958	 30.20	-1	1986010..1986264	-	84	22538143	-	SAG2008	-	hypothetical protein
1959	 28.46	-1	1986257..1986523	-	88	22538144	-	SAG2009	-	hypothetical protein
1960	 28.06	-1	1986668..1987141	-	157	22538145	-	SAG2010	-	hypothetical protein
1961	 35.82	0	1987149..1987631	-	160	22538146	-	SAG2011	-	hypothetical protein
1962	 35.53	0	1987684..1987956	-	90	22538147	-	SAG2012	-	hypothetical protein
1963	 29.30	-1	1988091..1988660	-	189	22538148	-	SAG2013	-	hypothetical protein
1964	 26.30	-2	1988663..1990012	-	449	22538149	-	SAG2014	-	hypothetical protein
1965	 26.33	-2	1990209..1990508	-	99	22538150	-	SAG2015	-	Cro/CI family transcriptional regulator
1966	 29.63	-1	1990492..1990869	-	125	22538151	-	SAG2016	-	hypothetical protein
1967	 33.64	0	1990885..1992174	-	429	22538152	-	SAG2017	-	Cro/CI family transcriptional regulator
1968	 31.17	-1	1992405..1994066	-	553	22538153	-	SAG2018	-	FtsK/SpoIIIE family protein
1969	 32.90	0	1994143..1994604	-	153	22538154	-	SAG2019	-	hypothetical protein
1970	 30.30	-1	1994626..1994922	-	98	22538155	-	SAG2020	-	hypothetical protein
1971	 35.79	0	1994982..1997462	-	826	22538156	-	SAG2021	-	cell wall surface anchor family protein
1972	 39.47	+1	1997467..1998720	-	417	22538157	-	SAG2022	-	ISL3 family transposase
1973	 36.62	0	1998880..2000520	-	546	22538158	merA-2	SAG2023	-	mercuric reductase
1974	 31.81	0	2000549..2000941	-	130	22538159	merR-2	SAG2024	-	mercuric resistance operon regulatory protein MerR
1975	 32.06	0	2001647..2003215	+	522	22538160	-	SAG2025	-	Mn2+/Fe2+ transporter
1976	 26.83	-2	2003783..2004505	-	240	22538161	-	SAG2026	-	hypothetical protein
1977	 26.21	-2	2004509..2005126	-	205	22538162	-	SAG2027	-	ABC transporter, ATP-binding protein
1978	 28.83	-1	2005184..2005294	-	36	22538163	-	SAG2028	-	hypothetical protein
1979	 26.78	-2	2005813..2006667	-	284	22538164	-	SAG2029	-	streptomycin resistance protein
1980	 32.32	0	2006846..2007238	-	130	22538165	-	SAG2030	-	hypothetical protein
1981	 30.71	-1	2007673..2008281	-	202	22538166	-	SAG2031	-	hypothetical protein
1982	 33.04	0	2008268..2008603	-	111	22538167	-	SAG2032	-	hypothetical protein
1983	 29.24	-1	2009125..2009613	-	162	22538168	-	SAG2033	-	acetyltransferase
1984	 29.57	-1	2009782..2010525	-	247	22538169	-	SAG2034	-	hypothetical protein
1985	 32.78	0	2010540..2011442	-	300	22538170	-	SAG2035	-	ABC transporter, ATP-binding protein
1986	 29.95	-1	2011439..2011645	-	68	22538171	-	SAG2036	-	hypothetical protein
1987	 31.94	0	2011647..2012723	-	358	22538172	-	SAG2037	-	Cro/CI family transcriptional regulator
1988	 32.03	0	2012972..2013586	-	204	22538173	-	SAG2038	-	PAP2 family protein
1989	 33.33	0	2013800..2014096	+	98	22538174	-	SAG2039	-	hypothetical protein
1990	 36.72	0	2014113..2014673	+	186	22538175	-	SAG2040	-	hypothetical protein
1991	 32.18	0	2014978..2015841	+	287	22538176	-	SAG2041	-	protease, putative
1992	 37.62	0	2015998..2016300	-	100	22538177	-	SAG2042	-	rhodanese-like domain-containing protein
1993	 33.33	0	2016473..2017240	-	255	22538178	cfb	SAG2043	-	cAMP factor
1994	 20.63	-2	2017460..2017648	-	62	22538179	-	SAG2044	-	hypothetical protein
1995	 35.93	0	2018009..2018548	+	179	22538180	-	SAG2045	-	topology modulation protein
1996	 39.13	0	2018749..2019834	+	361	22538181	-	SAG2046	-	glycerol dehydrogenase, putative
1997	 34.04	0	2019999..2020706	-	235	22538182	-	SAG2047	-	hypothetical protein
1998	 35.66	0	2021053..2022897	-	614	22538183	-	SAG2048	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
1999	 37.22	0	2022942..2025179	-	745	22538184	metE	SAG2049	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
2000	 31.17	-1	2025549..2025872	-	107	22538185	-	SAG2050	-	hypothetical protein
2001	 37.81	0	2025862..2026554	-	230	22538186	-	SAG2051	-	branched-chain amino acid transport protein AzlC, putative
2002	 21.43	-2	2026789..2026914	+	41	22538187	-	SAG2052	-	hypothetical protein
2003	 36.62	0	2026877..2031589	+	1570	22538188	-	SAG2053	-	serine protease
2004	 33.62	0	2031822..2032508	+	228	22538189	-	SAG2054	-	DNA-binding response regulator
2005	 33.33	0	2032505..2033893	+	462	22538190	-	SAG2055	-	sensor histidine kinase
2006	 29.56	-1	2033986..2034594	+	202	22538191	-	SAG2056	-	hypothetical protein
2007	 45.92	+2	2034681..2037182	-	833	22538192	leuS	SAG2057	-	leucyl-tRNA synthetase
2008	 38.54	0	2037559..2038806	+	415	22538193	-	SAG2058	-	major facilitator family protein
2009	 35.82	0	2038849..2039694	-	281	22538194	-	SAG2059	-	hypothetical protein
2010	 32.41	0	2039899..2041095	+	398	22538195	-	SAG2060	-	glycosyl transferase family protein
2011	 31.51	-1	2041160..2042365	+	401	22538196	-	SAG2061	-	glycosyl transferase family protein
2012	 36.85	0	2042412..2042951	-	179	22538197	nusG	SAG2062	-	transcription antitermination protein NusG
2013	 36.61	0	2043157..2045049	-	630	22538198	-	SAG2063	-	pathogenicity protein, putative
2014	 35.06	0	2045361..2045534	-	57	22538199	secE	SAG2064	-	preprotein translocase subunit SecE
2015	 39.22	0	2045570..2045722	-	50	22538200	rpmG	SAG2065	-	50S ribosomal protein L33
2016	 36.48	0	2045771..2048092	-	773	22538201	pbp2A	SAG2066	-	penicillin-binding protein 2A
2017	 35.48	0	2048136..2049020	+	294	22538202	-	SAG2067	-	ribosomal large subunit pseudouridine synthase D
2018	 33.46	0	2049045..2050685	-	546	22538203	-	SAG2068	-	hypothetical protein
2019	 41.67	+1	2050855..2052066	-	403	22538204	deoB-2	SAG2069	-	phosphopentomutase
2020	 37.20	0	2052133..2052804	-	223	22538205	deoC	SAG2070	-	deoxyribose-phosphate aldolase
2021	 35.83	0	2052834..2054036	-	400	22538206	-	SAG2071	-	Na+ dependent nucleoside transporter
2022	 40.90	+1	2054057..2054836	-	259	22538207	udp	SAG2072	-	uridine phosphorylase
2023	 34.15	0	2054994..2055731	+	245	22538208	-	SAG2073	-	GntR family transcriptional regulator
2024	 40.73	+1	2056140..2057762	-	540	22538209	groEL	SAG2074	-	chaperonin GroEL
2025	 43.51	+2	2057858..2058142	-	94	22538210	groES	SAG2075	-	co-chaperonin GroES
2026	 38.68	0	2058317..2059120	-	267	22538211	-	SAG2076	-	ABC transporter, ATP-binding protein
2027	 36.01	0	2059125..2060021	-	298	22538212	-	SAG2077	-	ABC transporter, permease protein
2028	 35.20	0	2060037..2060999	-	320	22538213	-	SAG2078	-	protein of unknown function/lipoprotein, putative
2029	 34.46	0	2061464..2062261	-	265	22538214	-	SAG2079	-	HAD superfamily hydrolase
2030	 34.49	0	2062447..2063307	+	286	22538215	-	SAG2080	-	glyoxalase family protein
2031	 32.38	0	2063350..2064081	+	243	22538216	-	SAG2081	-	hypothetical protein
2032	 37.06	0	2064438..2065055	-	205	22538217	nrdG	SAG2082	-	anaerobic ribonucleoside-triphosphate reductase activating protein
2033	 35.57	0	2065128..2065619	-	163	22538218	-	SAG2083	-	acetyltransferase
2034	 36.23	0	2065628..2066560	-	310	22538219	-	SAG2084	-	virulence factor MviM, putative
2035	 34.72	0	2066573..2066716	-	47	22538220	-	SAG2085	-	hypothetical protein
2036	 36.60	0	2066791..2068962	-	723	22538221	nrdD	SAG2086	-	anaerobic ribonucleoside triphosphate reductase
2037	 31.99	0	2069088..2070575	-	495	22538222	-	SAG2087	-	hypothetical protein
2038	 31.71	0	2070675..2070797	-	40	22538223	-	SAG2088	-	hypothetical protein
2039	 38.99	0	2070879..2071196	-	105	22538224	-	SAG2089	-	hypothetical protein
2040	 37.71	0	2071222..2071632	-	136	22538225	-	SAG2090	-	Holliday junction resolvase-like protein
2041	 33.71	0	2071641..2071907	-	88	22538226	-	SAG2091	-	hypothetical protein
2042	 32.33	0	2072109..2072507	-	132	22538227	spxA	SAG2092	-	transcriptional regulator Spx
2043	 39.65	+1	2072723..2073862	-	379	22538228	recA	SAG2093	-	recombinase A
2044	 34.78	0	2075285..2075836	-	183	22538229	tag	SAG2095	-	DNA-3-methyladenine glycosylase I
2045	 35.36	0	2075859..2076449	-	196	22538230	ruvA	SAG2096	-	Holliday junction DNA helicase motor protein
2046	 35.48	0	2076451..2077707	-	418	22538231	-	SAG2097	-	transporter, putative
2047	 35.71	0	2077715..2079694	-	659	22538232	mutL	SAG2098	-	DNA mismatch repair protein
2048	 23.53	-2	2079819..2079920	-	33	22538233	-	SAG2099	-	hypothetical protein
2049	 34.80	0	2079914..2080117	+	67	22538234	-	SAG2100	-	CSD family cold shock protein
2050	 37.76	0	2080174..2082750	-	858	22538235	hexA	SAG2101	-	DNA mismatch repair protein
2051	 35.39	0	2082807..2083244	-	145	22538236	-	SAG2102	-	arginine repressor ArgR, putative
2052	 38.12	0	2083466..2085157	+	563	22538237	argS	SAG2103	-	arginyl-tRNA synthetase
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.