IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1875	 33.77	0	1906249..1906938	+	229	22538060	-	SAG1922	-	response regulator
1876	 38.15	0	1906951..1907946	-	331	22538061	galE	SAG1923	-	UDP-glucose 4-epimerase
1877	 37.06	0	1908034..1909641	-	535	22538062	dexB	SAG1924	-	glucan 1,6-alpha-glucosidase
1878	 37.30	0	1909769..1910902	-	377	22538063	-	SAG1925	-	sugar ABC transporter, ATP-binding protein
1879	 35.68	0	1911003..1911854	-	283	22538064	-	SAG1926	-	helix-turn-helix domain-containing protein
1880	 34.78	0	1911949..1912845	-	298	22538065	-	SAG1927	-	lacX protein
1881	 38.04	0	1912899..1913876	-	325	22538066	lacD	SAG1928	-	tagatose 1,6-diphosphate aldolase
1882	 37.41	0	1913878..1914810	-	310	22538067	lacC	SAG1929	-	tagatose-6-phosphate kinase
1883	 35.85	0	1914821..1915336	-	171	22538068	lacB	SAG1930	-	galactose-6-phosphate isomerase subunit LacB
1884	 38.03	0	1915357..1915782	-	141	22538069	lacA	SAG1931	-	galactose-6-phosphate isomerase subunit LacA
1885	 34.48	0	1916030..1918480	-	816	22538070	-	SAG1932	-	neuraminidase-related protein
1886	 36.71	0	1918719..1920167	-	482	22538071	-	SAG1933	-	PTS system, IIC component, putative
1887	 35.29	0	1920207..1920512	-	101	22538072	-	SAG1934	-	PTS system, IIB component, putative
1888	 32.07	0	1920514..1920987	-	157	22538073	-	SAG1935	-	PTS system, IIA component, putative
1889	 31.40	-1	1921197..1921973	+	258	22538074	lacR-2	SAG1936	-	lactose phosphotransferase system repressor
1890	 36.36	0	1924811..1925734	-	307	22538075	-	SAG1938	-	adhesion lipoprotein
1891	 34.46	0	1925989..1926432	-	147	22538076	-	SAG1939	-	D-tyrosyl-tRNA deacylase
1892	 37.35	0	1926442..1928658	-	738	22538077	-	SAG1940	-	GTP pyrophosphokinase family protein
1893	 37.62	0	1928918..1931320	+	800	22538078	cpdB	SAG1941	-	2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic precursor protein
1894	 37.06	0	1931477..1931932	+	151	22538079	nrdI-2	SAG1942	-	hypothetical protein
1895	 38.73	0	1931943..1932980	+	345	22538080	-	SAG1943	-	hypothetical protein
1896	 34.74	0	1932980..1933477	+	165	22538081	-	SAG1944	-	hypothetical protein
1897	 35.45	0	1933699..1934736	-	345	22538082	-	SAG1945	-	iron ABC transporter, iron-binding protein
1898	 33.59	0	1934748..1935521	-	257	22538083	-	SAG1946	-	DNA-binding response regulator
1899	 32.79	0	1935525..1937174	-	549	22538084	-	SAG1947	-	hypothetical protein
1900	 39.13	0	1937312..1938139	-	275	22538085	-	SAG1948	-	PTS system, IID component
1901	 40.00	+1	1938136..1938945	-	269	22538086	-	SAG1949	-	PTS system, IIC component
1902	 36.59	0	1938961..1939452	-	163	22538087	-	SAG1950	-	PTS system, IIB component
1903	 36.38	0	1939470..1939895	-	141	22538088	-	SAG1951	-	PTS system, IIA component, putative
1904	 33.52	0	1940142..1941203	-	353	22538089	-	SAG1952	-	hypothetical protein
1905	 29.51	-1	1941228..1941410	+	60	22538090	-	SAG1953	-	hypothetical protein
1906	 33.42	0	1941405..1942559	-	384	22538091	-	SAG1954	-	hypothetical protein
1907	 36.28	0	1942565..1943413	-	282	22538092	-	SAG1955	-	ABC transporter, ATP-binding protein
1908	 32.01	0	1943904..1944656	-	250	22538093	-	SAG1957	-	response regulator
1909	 38.39	0	1944933..1945763	-	276	22538094	-	SAG1958	-	hypothetical protein
1910	 37.73	0	1945802..1947985	-	727	22538095	-	SAG1959	-	PTS system, IIABC components
1911	 35.08	0	1948143..1949798	-	551	22538096	-	SAG1960	-	sensor histidine kinase
1912	 37.76	0	1949791..1950468	-	225	22538097	phoB	SAG1961	-	phosphate regulon response regulator PhoB
1913	 35.46	0	1950468..1951124	-	218	22538098	-	SAG1962	-	phosphate transport system regulatory protein PhoU, putative
1914	 38.06	0	1951121..1951882	-	253	22538099	-	SAG1963	-	phosphate ABC transporter, ATP-binding protein
1915	 35.84	0	1951863..1952741	-	292	22538100	-	SAG1964	-	phosphate ABC transporter, permease protein
1916	 38.53	0	1952743..1953588	-	281	22538101	-	SAG1965	-	phosphate ABC transporter, permease protein
1917	 35.49	0	1953603..1954484	-	293	22538102	-	SAG1966	-	hemolysin precursor, putative
1918	 31.97	0	1954685..1955272	-	195	22538103	-	SAG1967	-	hypothetical protein
1919	 47.37	+2	1955269..1956009	-	246	22538104	-	SAG1968	-	hypothetical protein
1920	 47.17	+2	1956009..1956962	-	317	22538105	prmA	SAG1969	-	ribosomal protein L11 methyltransferase
1921	 35.60	0	1956959..1957267	-	102	22538106	-	SAG1970	-	hypothetical protein
1922	 30.16	-1	1957329..1957454	+	41	22538107	-	SAG1971	-	hypothetical protein
1923	 37.94	0	1957541..1958257	+	238	22538108	-	SAG1972	-	MerR family transcriptional regulator
1924	 40.34	+1	1958296..1958766	-	156	22538109	-	SAG1973	-	acetyltransferase
1925	 39.87	+1	1958738..1959196	-	152	22538110	-	SAG1974	-	MutT/nudix family protein
1926	 34.72	0	1959183..1959326	-	47	22538111	-	SAG1975	-	hypothetical protein
1927	 43.74	+2	1959332..1959802	-	156	22538112	-	SAG1976	-	hypothetical protein
1928	 45.53	+2	1960129..1960620	+	163	22538113	-	SAG1977	-	acetyltransferase
1929	 38.77	0	1960613..1961881	+	422	22538114	-	SAG1978	-	recombination factor protein RarA
1930	 34.25	0	1962397..1963158	-	253	22538115	-	SAG1979	-	hypothetical protein
1931	 37.98	0	1963155..1964057	-	300	22538116	-	SAG1980	-	ABC transporter, ATP-binding protein
1932	 33.33	0	1964054..1964260	-	68	22538117	-	SAG1981	-	hypothetical protein
1933	 37.13	0	1964250..1965329	-	359	22538118	-	SAG1982	-	Cro/CI family transcriptional regulator
1934	 29.87	-1	1965710..1966027	+	105	22538119	-	SAG1983	-	hypothetical protein
1935	 34.22	0	1966024..1966590	+	188	22538120	-	SAG1984	-	hypothetical protein
1936	 20.51	-2	1966644..1966799	-	51	22538121	-	SAG1985	-	hypothetical protein
1937	 32.18	0	1966825..1967952	-	375	22538122	-	SAG1986	-	phage integrase family site specific recombinase
1938	 34.41	0	1967956..1968141	-	61	22538123	-	SAG1987	-	hypothetical protein
1939	 35.57	0	1968202..1969230	-	342	22538124	-	SAG1988	-	hypothetical protein
1940	 30.48	-1	1969233..1969652	-	139	22538125	-	SAG1989	-	hypothetical protein
1941	 30.99	-1	1969978..1970361	-	127	22538126	-	SAG1990	-	hypothetical protein
1942	 30.57	-1	1970585..1971199	+	204	22538127	-	SAG1991	-	Cro/CI family transcriptional regulator
1943	 28.32	-1	1971372..1972928	-	518	22538128	-	SAG1992	-	hypothetical protein
1944	 29.50	-1	1973269..1974390	-	373	22538129	-	SAG1993	-	phage integrase family site specific recombinase
1945	 25.99	-2	1974440..1974766	-	108	22538130	-	SAG1994	-	hypothetical protein
1946	 28.12	-1	1974959..1975591	-	210	22538131	-	SAG1995	-	hypothetical protein
1947	 35.73	0	1975672..1976463	-	263	22538132	-	SAG1996	-	cell wall surface anchor family protein, putative
1948	 30.05	-1	1976480..1977028	-	182	22538133	-	SAG1997	-	hypothetical protein
1949	 36.61	0	1977028..1978401	-	457	22538134	-	SAG1998	-	hypothetical protein
1950	 37.50	0	1978564..1978707	+	47	22538135	-	SAG1999	-	hypothetical protein
1951	 32.68	0	1978897..1980897	-	666	22538136	-	SAG2000	-	hypothetical protein
1952	 34.48	0	1980913..1983183	-	756	22538137	-	SAG2001	-	conjugal transfer protein, interruption-C
1953	 38.46	0	1983230..1983619	-	129	22538138	-	SAG2002	-	IS1381 transposase protein B
1954	 39.06	0	1983652..1984035	-	127	22538139	-	SAG2003	-	IS1381 transposase protein A
1955	 32.60	0	1984296..1984706	-	136	22538140	-	SAG2005	-	hypothetical protein
1956	 33.71	0	1984717..1984983	-	88	22538141	-	SAG2006	-	hypothetical protein
1957	 30.19	-1	1985004..1985957	-	317	22538142	-	SAG2007	-	hypothetical protein
1958	 30.20	-1	1986010..1986264	-	84	22538143	-	SAG2008	-	hypothetical protein
1959	 28.46	-1	1986257..1986523	-	88	22538144	-	SAG2009	-	hypothetical protein
1960	 28.06	-1	1986668..1987141	-	157	22538145	-	SAG2010	-	hypothetical protein
1961	 35.82	0	1987149..1987631	-	160	22538146	-	SAG2011	-	hypothetical protein
1962	 35.53	0	1987684..1987956	-	90	22538147	-	SAG2012	-	hypothetical protein
1963	 29.30	-1	1988091..1988660	-	189	22538148	-	SAG2013	-	hypothetical protein
1964	 26.30	-2	1988663..1990012	-	449	22538149	-	SAG2014	-	hypothetical protein
1965	 26.33	-2	1990209..1990508	-	99	22538150	-	SAG2015	-	Cro/CI family transcriptional regulator
1966	 29.63	-1	1990492..1990869	-	125	22538151	-	SAG2016	-	hypothetical protein
1967	 33.64	0	1990885..1992174	-	429	22538152	-	SAG2017	-	Cro/CI family transcriptional regulator
1968	 31.17	-1	1992405..1994066	-	553	22538153	-	SAG2018	-	FtsK/SpoIIIE family protein
1969	 32.90	0	1994143..1994604	-	153	22538154	-	SAG2019	-	hypothetical protein
1970	 30.30	-1	1994626..1994922	-	98	22538155	-	SAG2020	-	hypothetical protein
1971	 35.79	0	1994982..1997462	-	826	22538156	-	SAG2021	-	cell wall surface anchor family protein
1972	 39.47	+1	1997467..1998720	-	417	22538157	-	SAG2022	-	ISL3 family transposase
1973	 36.62	0	1998880..2000520	-	546	22538158	merA-2	SAG2023	-	mercuric reductase
1974	 31.81	0	2000549..2000941	-	130	22538159	merR-2	SAG2024	-	mercuric resistance operon regulatory protein MerR
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.