IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1779	 39.78	+1	1822443..1823420	+	325	22537964	-	SAG1825	-	NifR3/Smm1 family protein
1780	 34.74	0	1823541..1824182	+	213	22537965	-	SAG1826	-	deoxynucleoside kinase family protein
1781	 34.76	0	1824196..1824687	+	163	22537966	pat	SAG1827	-	phosphinothricin N-acetyltransferase
1782	 37.25	0	1824907..1827354	-	815	22537967	-	SAG1828	-	ATP-dependent Clp protease, ATP-binding subunit
1783	 35.05	0	1827351..1827815	-	154	22537968	ctsR	SAG1829	-	transcriptional regulator CtsR
1784	 41.13	+1	1827988..1828449	+	153	22537969	-	SAG1830	-	hypothetical protein
1785	 38.81	0	1828608..1829648	-	346	22537970	tsf	SAG1831	-	elongation factor Ts
1786	 40.21	+1	1829742..1830512	-	256	22537971	rpsB	SAG1832	-	30S ribosomal protein S2
1787	 38.32	0	1830789..1831349	+	186	22537972	ahpC	SAG1833	-	alkyl hydroperoxide reductase, subunit C
1788	 38.16	0	1831367..1832899	+	510	22537973	ahpF	SAG1834	-	alkyl hydroperoxide reductase, subunit F
1789	 40.00	+1	1833318..1833722	-	134	22537974	-	SAG1835	-	hypothetical protein
1790	 42.47	+1	1833783..1833968	-	61	22537975	-	SAG1836	-	hypothetical protein
1791	 46.27	+2	1834175..1835581	-	468	22537976	-	SAG1837	-	prophage LambdaSa2, lysin, putative
1792	 41.21	+1	1835585..1835914	-	109	22537977	-	SAG1838	-	prophage LambdaSa2, holin, putative
1793	 41.36	+1	1835917..1836327	-	136	22537978	-	SAG1839	-	hypothetical protein
1794	 43.36	+2	1836362..1836700	-	112	22537979	-	SAG1840	-	hypothetical protein
1795	 43.29	+2	1836703..1836933	-	76	22537980	-	SAG1841	-	hypothetical protein
1796	 43.27	+2	1836950..1840624	-	1224	22537981	-	SAG1842	-	prophage LambdaSa2, PblB, putative
1797	 41.49	+1	1840625..1841347	-	240	22537982	-	SAG1843	-	hypothetical protein
1798	 42.76	+1	1841344..1844079	-	911	22537983	-	SAG1844	-	hypothetical protein
1799	 37.98	0	1844098..1844226	-	42	22537984	-	SAG1845	-	hypothetical protein
1800	 38.16	0	1844265..1844741	-	158	22537985	-	SAG1846	-	hypothetical protein
1801	 41.23	+1	1844741..1845424	-	227	22537986	-	SAG1847	-	hypothetical protein
1802	 40.87	+1	1845439..1845783	-	114	22537987	-	SAG1848	-	hypothetical protein
1803	 38.22	0	1845770..1846117	-	115	22537988	-	SAG1849	-	hypothetical protein
1804	 38.89	0	1846117..1846422	-	101	22537989	-	SAG1850	-	hypothetical protein
1805	 38.10	0	1846419..1846754	-	111	22537990	-	SAG1851	-	hypothetical protein
1806	 39.75	+1	1846775..1848037	-	420	22537991	-	SAG1852	-	hypothetical protein
1807	 40.15	+1	1848048..1848590	-	180	22537992	-	SAG1853	-	prophage LambdaSa2, protease, putative
1808	 41.29	+1	1848640..1849782	-	380	22537993	-	SAG1854	-	hypothetical protein
1809	 41.68	+1	1849791..1851503	-	570	22537994	-	SAG1855	-	prophage LambdaSa2, terminase large subunit, putative
1810	 36.83	0	1851496..1851981	-	161	22537995	-	SAG1856	-	hypothetical protein
1811	 33.89	0	1852069..1852428	-	119	22537996	-	SAG1857	-	prophage LambdaSa2, HNH endonuclease family protein
1812	 32.99	0	1852428..1852715	-	95	22537997	-	SAG1858	-	hypothetical protein
1813	 38.31	0	1853005..1853547	-	180	22537998	-	SAG1859	-	prophage LambdaSa2, site-specific recombinase phage integrase family protein
1814	 38.92	0	1853657..1854121	-	154	22537999	-	SAG1860	-	hypothetical protein
1815	 41.67	+1	1854118..1854477	-	119	22538000	-	SAG1861	-	prophage LambdaSa2, Cro/CI family transcriptional regulator
1816	 41.38	+1	1854462..1854722	-	86	22538001	-	SAG1862	-	hypothetical protein
1817	 42.21	+1	1854732..1855148	-	138	22538002	ssb-4	SAG1863	-	prophage LambdaSa2, single-strand binding protein
1818	 35.27	0	1855138..1855344	-	68	22538003	-	SAG1864	-	hypothetical protein
1819	 38.22	0	1855341..1855565	-	74	22538004	-	SAG1865	-	hypothetical protein
1820	 39.70	+1	1855697..1856026	-	109	22538005	-	SAG1866	-	hypothetical protein
1821	 41.67	+1	1856026..1856517	-	163	22538006	-	SAG1867	-	hypothetical protein
1822	 34.07	0	1856510..1856914	-	134	22538007	-	SAG1868	-	hypothetical protein
1823	 41.17	+1	1856911..1858224	-	437	22538008	-	SAG1869	-	prophage LambdaSa2, type II DNA modification methyltransferase, putative
1824	 43.07	+2	1858224..1859045	-	273	22538009	-	SAG1870	-	prophage LambdaSa2, DNA replication protein DnaC, putative
1825	 34.83	0	1859770..1860372	-	200	22538010	-	SAG1872	-	hypothetical protein
1826	 43.84	+2	1860374..1861705	-	443	22538011	dnaC-1	SAG1873	-	prophage LambdaSa2, replicative DNA helicase
1827	 37.88	0	1861714..1861977	-	87	22538012	-	SAG1874	-	hypothetical protein
1828	 37.89	0	1861956..1862240	-	94	22538013	-	SAG1875	-	hypothetical protein
1829	 35.03	0	1862240..1862770	-	176	22538014	-	SAG1876	-	prophage LambdaSa2, HNH endonuclease family protein
1830	 40.93	+1	1862833..1863543	-	236	22538015	-	SAG1877	-	prophage LambdaSa2, antirepressor protein, putative
1831	 36.89	0	1863546..1863854	-	102	22538016	-	SAG1878	-	hypothetical protein
1832	 35.46	0	1863816..1864286	+	156	22538017	-	SAG1879	-	hypothetical protein
1833	 36.36	0	1864269..1864433	-	54	22538018	-	SAG1880	-	hypothetical protein
1834	 31.41	-1	1864415..1864570	-	51	22538019	-	SAG1881	-	hypothetical protein
1835	 37.19	0	1864719..1865081	+	120	22538020	-	SAG1882	-	prophage LambdaSa2, repressor protein, putative
1836	 39.28	+1	1865082..1865468	+	128	22538021	-	SAG1883	-	hypothetical protein
1837	 34.57	0	1865521..1865925	+	134	22538022	-	SAG1884	-	hypothetical protein
1838	 36.60	0	1866047..1867117	+	356	22538023	-	SAG1885	-	prophage LambdaSa2, site-specific recombinase phage integrase family protein
1839	 36.36	0	1867119..1867217	+	32	22538024	-	SAG1886	-	hypothetical protein
1840	 34.54	0	1867260..1869329	-	689	22538025	-	SAG1887	-	Na+/H+ exchanger family protein
1841	 26.58	-2	1869331..1869567	-	78	22538026	-	SAG1888	-	hypothetical protein
1842	 39.31	+1	1869734..1870687	+	317	22538027	-	SAG1889	-	microcin immunity protein MccF, putative
1843	 36.97	0	1870737..1872632	-	631	22538028	pepO	SAG1890	-	endopeptidase O
1844	 37.60	0	1872780..1873763	+	327	22538029	-	SAG1891	-	Gfo/Idh/MocA family oxidoreductase
1845	 35.28	0	1873809..1874885	-	358	22538030	-	SAG1892	-	hypothetical protein
1846	 28.33	-1	1874869..1875048	-	59	22538031	-	SAG1893	-	hypothetical protein
1847	 35.04	0	1875084..1875728	+	214	22538032	-	SAG1894	-	cyclic nucleotide-binding domain-containing protein
1848	 39.35	+1	1875794..1876408	+	204	22538033	def	SAG1895	-	peptide deformylase
1849	 33.73	0	1876479..1877480	-	333	22538034	regR	SAG1896	-	sugar-binding transcriptional regulator RegR
1850	 32.86	0	1877560..1879464	-	634	22538035	-	SAG1897	-	hypothetical protein
1851	 36.40	0	1879544..1880359	-	271	22538036	-	SAG1898	-	PTS system, IID component
1852	 41.52	+1	1880346..1881212	-	288	22538037	-	SAG1899	-	PTS system, IIC component
1853	 34.14	0	1881248..1881742	-	164	22538038	-	SAG1900	-	PTS system, IIB component
1854	 36.51	0	1881797..1882993	-	398	22538039	-	SAG1901	-	glucuronyl hydrolase
1855	 34.02	0	1882996..1883430	-	144	22538040	-	SAG1902	-	PTS system, IIA component
1856	 21.90	-2	1883531..1883635	+	34	22538041	-	SAG1903	-	hypothetical protein
1857	 41.57	+1	1883708..1884520	+	270	22538042	-	SAG1904	-	gluconate 5-dehydrogenase
1858	 37.25	0	1884537..1885175	+	212	22538043	-	SAG1905	-	hypothetical protein
1859	 37.60	0	1885201..1886208	+	335	22538044	-	SAG1906	-	carbohydrate kinase
1860	 38.03	0	1886220..1886858	+	212	22538045	eda-2	SAG1907	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
1861	 28.67	-1	1887919..1889418	+	499	22538046	-	SAG1908	-	hypothetical protein
1862	 37.56	0	1889589..1890203	-	204	22538047	-	SAG1909	-	nitroreductase family protein
1863	 32.86	0	1890336..1890761	-	141	22538048	-	SAG1910	-	MarR family transcriptional regulator
1864	 38.08	0	1890888..1895294	-	1468	22538049	polC	SAG1911	-	DNA polymerase III PolC
1865	 35.04	0	1895417..1896001	-	194	22538050	-	SAG1912	-	N-acetylmuramoyl-L-alanine amidase
1866	 38.35	0	1896126..1897979	-	617	22538051	proS	SAG1913	-	prolyl-tRNA synthetase
1867	 36.27	0	1898071..1899330	-	419	22538052	-	SAG1914	-	membrane-associated zinc metalloprotease, putative
1868	 37.23	0	1899361..1900155	-	264	22538053	cdsA	SAG1915	-	phosphatidate cytidylyltransferase
1869	 36.65	0	1900170..1900922	-	250	22538054	uppS	SAG1916	-	undecaprenyl diphosphate synthase
1870	 35.96	0	1901089..1901430	-	113	22538055	yajC	SAG1917	-	preprotein translocase subunit YajC
1871	 32.46	0	1901507..1901851	-	114	22538056	-	SAG1918	-	hypothetical protein
1872	 38.75	0	1902042..1903205	-	387	22538057	-	SAG1919	-	malate oxidoreductase
1873	 36.32	0	1903230..1904567	-	445	22538058	-	SAG1920	-	CCS family citrate carrier protein
1874	 32.87	0	1904721..1906247	+	508	22538059	-	SAG1921	-	sensor histidine kinase
1875	 33.77	0	1906249..1906938	+	229	22538060	-	SAG1922	-	response regulator
1876	 38.15	0	1906951..1907946	-	331	22538061	galE	SAG1923	-	UDP-glucose 4-epimerase
1877	 37.06	0	1908034..1909641	-	535	22538062	dexB	SAG1924	-	glucan 1,6-alpha-glucosidase
1878	 37.30	0	1909769..1910902	-	377	22538063	-	SAG1925	-	sugar ABC transporter, ATP-binding protein
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.