IslandPathversion 1.0

IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.44 STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1672	 31.94	0	1711933..1712433	-	166	22537857	-	SAG1718	-	PAP2 family protein
1673	 36.79	0	1712437..1714776	-	779	22537858	-	SAG1719	-	MutS2 family protein
1674	 32.41	0	1714861..1715403	-	180	22537859	-	SAG1720	-	hypothetical protein
1675	 32.37	0	1715406..1715717	-	103	22537860	-	SAG1721	-	hypothetical protein
1676	 34.79	0	1715828..1716721	+	297	22537861	rnhC	SAG1722	-	ribonuclease HIII
1677	 37.54	0	1716737..1717330	+	197	22537862	-	SAG1723	-	signal peptidase I
1678	 34.28	0	1717459..1719879	+	806	22537863	-	SAG1724	-	helicase, putative
1679	 34.78	0	1719993..1720475	+	160	22537864	-	SAG1725	-	hypothetical protein
1680	 36.07	0	1720546..1721640	-	364	22537865	dinP	SAG1726	-	DNA polymerase IV
1681	 39.13	0	1721825..1724137	+	770	22537866	pflD-2	SAG1727	-	formate acetyltransferase
1682	 36.53	0	1724238..1724612	+	124	22537867	-	SAG1728	-	FMN-binding protein
1683	 34.41	0	1724647..1725576	-	309	22537868	-	SAG1729	-	hypothetical protein
1684	 34.92	0	1725573..1726328	-	251	22537869	-	SAG1730	-	hypothetical protein
1685	 38.35	0	1726453..1727349	+	298	22537870	-	SAG1731	-	hypothetical protein
1686	 38.87	0	1727428..1728276	-	282	22537871	-	SAG1732	-	glycerol uptake facilitator protein, putative
1687	 36.42	0	1728444..1728896	-	150	22537872	-	SAG1733	-	universal stress protein
1688	 34.58	0	1728914..1730116	-	400	22537873	-	SAG1734	-	transporter, putative
1689	 32.27	0	1730273..1730932	+	219	22537874	-	SAG1735	-	Crp/FNR family transcriptional regulator
1690	 36.18	0	1730956..1733241	+	761	22537875	pepX	SAG1736	-	x-prolyl-dipeptidyl aminopeptidase
1691	 33.06	0	1733245..1733604	+	119	22537876	-	SAG1737	-	hypothetical protein
1692	 36.60	0	1733650..1734630	+	326	22537877	-	SAG1738	-	polyprenyl synthetase family protein
1693	 36.42	0	1734715..1736463	-	582	22537878	cydC	SAG1739	-	ABC transporter, ATP-binding protein CydC
1694	 34.61	0	1736456..1738174	-	572	22537879	-	SAG1740	-	ABC transporter, ATP-binding protein CydD
1695	 37.84	0	1738174..1739193	-	339	22537880	cydB	SAG1741	-	cytochrome d ubiquinol oxidase, subunit II
1696	 37.04	0	1739194..1740621	-	475	22537881	cydA	SAG1742	-	cytochrome d oxidase, subunit I
1697	 37.72	0	1740724..1741932	-	402	22537882	-	SAG1743	-	pyridine nucleotide-disulphide oxidoreductase family protein
1698	 34.22	0	1741945..1742844	-	299	22537883	-	SAG1744	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1699	 39.15	0	1743253..1743699	-	148	22537884	-	SAG1745	-	hypothetical protein
1700	 28.70	-1	1744352..1744459	-	35	22537885	-	SAG1746	-	hypothetical protein
1701	 37.33	0	1744582..1744881	+	99	22537886	-	SAG1747	-	hypothetical protein
1702	 35.26	0	1745041..1746231	+	396	22537887	cfa	SAG1748	-	cyclopropane-fatty-acyl-phospholipid synthase
1703	 32.92	0	1746301..1747026	-	241	22537888	-	SAG1749	-	MerR family transcriptional regulator
1704	 33.50	0	1747153..1747740	-	195	22537889	-	SAG1750	-	DNA polymerase III subunit epsilon
1705	 33.52	0	1747784..1748320	-	178	22537890	-	SAG1751	-	hypothetical protein
1706	 36.66	0	1748455..1749627	+	390	22537891	-	SAG1752	-	hypothetical protein
1707	 34.23	0	1749671..1750453	-	260	22537892	-	SAG1753	-	hypothetical protein
1708	 37.41	0	1750612..1750881	+	89	22537893	rpsN	SAG1754	-	30S ribosomal protein S14
1709	 25.64	-2	1751089..1751205	+	38	22537894	-	SAG1755	-	hypothetical protein
1710	 36.45	0	1751242..1752267	-	341	22537895	-	SAG1756	-	hypothetical protein
1711	 38.58	0	1752387..1753397	-	336	22537896	-	SAG1757	-	O-sialoglycoprotein endopeptidase
1712	 33.82	0	1753473..1753880	-	135	22537897	-	SAG1758	-	ribosomal-protein-alanine acetyltransferase, putative
1713	 36.22	0	1753882..1754574	-	230	22537898	-	SAG1759	-	hypothetical protein
1714	 35.93	0	1754753..1754983	+	76	22537899	-	SAG1760	-	hypothetical protein
1715	 39.64	+1	1755037..1756716	+	559	22537900	-	SAG1761	-	metallo-beta-lactamase superfamily protein
1716	 42.16	+1	1756874..1757383	-	169	22537901	-	SAG1762	-	hypothetical protein
1717	 37.19	0	1757531..1758877	-	448	22537902	glnA	SAG1763	-	glutamine synthetase, type I
1718	 38.98	0	1758911..1759282	-	123	22537903	glnR	SAG1764	-	transcriptional regulator GlnR
1719	 28.70	-1	1759362..1759901	-	179	22537904	-	SAG1765	-	hypothetical protein
1720	 41.60	+1	1760164..1761360	-	398	22537905	pgk	SAG1766	-	phosphoglycerate kinase
1721	 33.10	0	1761495..1762364	-	289	22537906	-	SAG1767	-	acid phosphatase
1722	 40.95	+1	1762573..1763583	-	336	22537907	gap	SAG1768	-	glyceraldehyde-3-phosphate dehydrogenase
1723	 41.03	+1	1763787..1765865	-	692	22537908	fusA	SAG1769	-	elongation factor G
1724	 43.31	+2	1766020..1766490	-	156	22537909	rpsG	SAG1770	-	30S ribosomal protein S7
1725	 41.79	+1	1766512..1766925	-	137	22537910	rpsL	SAG1771	-	30S ribosomal protein S12
1726	 36.29	0	1767144..1767956	-	270	22537911	purR	SAG1772	-	purine operon repressor
1727	 36.31	0	1768053..1768994	-	313	22537912	-	SAG1773	-	HD domain-containing protein
1728	 35.29	0	1768984..1770258	-	424	22537913	-	SAG1774	-	hypothetical protein
1729	 33.81	0	1770260..1770892	-	210	22537914	-	SAG1775	-	hypothetical protein
1730	 39.06	0	1770885..1771547	-	220	22537915	rpe	SAG1776	-	ribulose-phosphate 3-epimerase
1731	 37.92	0	1771554..1772426	-	290	22537916	-	SAG1777	-	ribosome-associated GTPase
1732	 32.75	0	1772582..1773433	-	283	22537917	-	SAG1778	-	rRNA (guanine-N1-)-methyltransferase, putative
1733	 40.32	+1	1773437..1774309	-	290	22537918	ksgA	SAG1779	-	dimethyladenosine transferase
1734	 33.74	0	1774389..1774880	-	163	22537919	-	SAG1780	-	hypothetical protein
1735	 44.74	+2	1774899..1775459	-	186	22537920	-	SAG1781	-	primase-related protein
1736	 36.91	0	1775446..1776228	-	260	22537921	-	SAG1782	-	TatD family deoxyribonuclease
1737	 36.63	0	1776410..1776682	-	90	22537922	-	SAG1783	-	hypothetical protein
1738	 33.59	0	1776701..1777093	-	130	22537923	-	SAG1784	-	hypothetical protein
1739	 36.35	0	1777084..1778376	-	430	22537924	-	SAG1785	-	hypothetical protein
1740	 31.55	-1	1778376..1778768	-	130	22537925	-	SAG1786	-	hypothetical protein
1741	 34.60	0	1778943..1780205	-	420	22537926	dltD	SAG1787	-	dltD protein
1742	 36.67	0	1780198..1780437	-	79	22537927	dltC	SAG1788	-	D-alanine--poly(phosphoribitol) ligase subunit 2
1743	 33.73	0	1780452..1781717	-	421	22537928	dltB	SAG1789	-	dltB protein
1744	 37.43	0	1781714..1783249	-	511	22537929	dltA	SAG1790	-	D-alanine--D-alanyl carrier protein ligase
1745	 34.09	0	1783395..1784582	-	395	22537930	-	SAG1791	-	sensor histidine kinase
1746	 34.22	0	1784582..1785256	-	224	22537931	-	SAG1792	-	DNA-binding response regulator
1747	 46.67	+2	1785612..1785746	-	44	22537932	rpmH	SAG1793	-	50S ribosomal protein L34
1748	 34.88	0	1785930..1787285	-	451	22537933	-	SAG1794	-	hypothetical protein
1749	 41.47	+1	1787517..1788683	+	388	22537934	-	SAG1795	-	IS30 family transposase
1750	 35.94	0	1789082..1790809	-	575	22537935	-	SAG1796	-	amino acid ABC transporter, permease protein
1751	 37.58	0	1790828..1792051	-	407	22537936	-	SAG1797	-	amino acid ABC transporter, ATP-binding protein
1752	 25.83	-2	1792194..1792313	+	39	22537937	-	SAG1798	-	hypothetical protein
1753	 38.50	0	1792428..1794806	-	792	22537938	xfp	SAG1799	-	putative phosphoketolase
1754	 37.45	0	1794896..1795987	-	363	22537939	-	SAG1800	-	putative L-ascorbate 6-phosphate lactonase
1755	 35.12	0	1796304..1797983	-	559	22537940	-	SAG1801	-	BglG family transcriptional antiterminator
1756	 34.25	0	1798049..1798810	-	253	22537941	-	SAG1802	-	hypothetical protein
1757	 37.68	0	1798830..1800347	-	505	22537942	-	SAG1803	-	carbohydrate kinase
1758	 36.87	0	1800413..1801402	-	329	22537943	-	SAG1804	-	hypothetical protein
1759	 38.71	0	1801424..1802875	-	483	22537944	-	SAG1805	-	PTS system, IIC component, putative
1760	 38.98	0	1802973..1803929	-	318	22537945	-	SAG1806	-	glyoxylate reductase, NADH-dependent
1761	 36.57	0	1803948..1804967	-	339	22537946	-	SAG1807	-	hypothetical protein
1762	 34.04	0	1805202..1806185	-	327	22537947	-	SAG1808	-	LacI family sugar-binding transcriptional regulator
1763	 38.58	0	1806349..1806996	-	215	22537948	-	SAG1809	-	putative translaldolase
1764	 38.91	0	1807007..1807723	-	238	22537949	araD	SAG1810	-	L-ribulose-5-phosphate 4-epimerase
1765	 37.62	0	1807725..1808588	-	287	22537950	-	SAG1811	-	putative L-xylulose 5-phosphate 3-epimerase
1766	 41.29	+1	1808592..1809257	-	221	22537951	ulaD	SAG1812	-	3-keto-L-gulonate-6-phosphate decarboxylase
1767	 37.45	0	1809370..1809855	-	161	22537952	-	SAG1813	-	PTS system, IIA component
1768	 38.35	0	1809922..1810200	-	92	22537953	-	SAG1814	-	PTS system, IIB component
1769	 38.33	0	1810228..1811667	-	479	22537954	ulaA	SAG1815	-	ascorbate-specific PTS system enzyme IIC
1770	 35.60	0	1811835..1812452	-	205	22537955	-	SAG1816	-	hypothetical protein
1771	 29.32	-1	1812611..1813084	+	157	22537956	-	SAG1817	-	hypothetical protein
35.44	MEAN

3.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.