IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1594	 35.85	0	1641638..1642708	-	356	22537779	-	SAG1639	-	ABC transporter, ATP-binding protein
1595	 36.53	0	1642701..1644077	-	458	22537780	-	SAG1640	-	hypothetical protein
1596	 32.61	0	1644211..1645035	-	274	22537781	-	SAG1641	-	YaeC family protein
1597	 33.57	0	1645176..1646009	-	277	22537782	-	SAG1642	-	ABC transporter, substrate-binding protein
1598	 35.51	0	1646111..1646800	-	229	22537783	-	SAG1643	-	glutamine amidotransferase, class I
1599	 25.44	-2	1646794..1646907	-	37	22537784	-	SAG1644	-	hypothetical protein
1600	 39.61	+1	1646955..1647671	-	238	22537785	-	SAG1645	-	hypothetical protein
1601	 30.30	-1	1647697..1647795	-	32	22537786	-	SAG1646	-	hypothetical protein
1602	 36.88	0	1647789..1648775	-	328	22537787	-	SAG1647	-	dihydroxyacetone kinase family protein
1603	 25.70	-2	1648785..1649321	-	178	22537788	-	SAG1648	-	TetR family transcriptional regulator
1604	 28.95	-1	1649385..1649498	+	37	22537789	-	SAG1649	-	hypothetical protein
1605	 39.49	+1	1649495..1650484	+	329	22537790	-	SAG1650	-	dihydroxyacetone kinase family protein
1606	 39.03	0	1650522..1651100	+	192	22537791	-	SAG1651	-	dihydroxyacetone kinase family protein
1607	 34.93	0	1651100..1651474	+	124	22537792	-	SAG1652	-	hypothetical protein
1608	 41.18	+1	1651484..1652197	+	237	22537793	glpF-2	SAG1653	-	glycerol uptake facilitator protein
1609	 37.53	0	1652462..1652866	-	134	22537794	-	SAG1654	-	hypothetical protein
1610	 32.91	0	1653005..1653718	-	237	22537795	-	SAG1655	-	MerR family transcriptional regulator
1611	 38.38	0	1653811..1654920	-	369	22537796	-	SAG1656	-	hypothetical protein
1612	 28.57	-1	1654917..1655168	-	83	22537797	-	SAG1657	-	hypothetical protein
1613	 34.83	0	1655191..1655925	-	244	22537798	-	SAG1658	-	hypothetical protein
1614	 40.34	+1	1655991..1656347	-	118	22537799	-	SAG1659	-	iojap-related protein
1615	 32.18	0	1656349..1656870	-	173	22537800	-	SAG1660	-	isochorismatase family protein
1616	 36.73	0	1656933..1657520	-	195	22537801	-	SAG1661	-	hypothetical protein
1617	 35.70	0	1657517..1658149	-	210	22537802	nadD	SAG1662	-	nicotinic acid mononucleotide adenylyltransferase
1618	 34.28	0	1658279..1658596	-	105	22537803	-	SAG1663	-	hypothetical protein
1619	 36.01	0	1658689..1659807	-	372	22537804	-	SAG1664	-	GTP-binding protein YqeH
1620	 38.95	0	1659807..1660340	-	177	22537805	-	SAG1665	-	HAD superfamily hydrolase
1621	 34.75	0	1660451..1661365	-	304	22537806	-	SAG1666	-	hypothetical protein
1622	 36.87	0	1661495..1662937	-	480	22537807	gatB	SAG1667	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1623	 37.42	0	1662937..1664403	-	488	22537808	gatA	SAG1668	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1624	 37.95	0	1664403..1664705	-	100	22537809	gatC	SAG1669	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1625	 37.83	0	1664843..1667488	-	881	22537810	ppdK	SAG1670	-	pyruvate phosphate dikinase
1626	 33.57	0	1667501..1668331	-	276	22537811	-	SAG1671	-	hypothetical protein
1627	 35.48	0	1668342..1668854	-	170	22537812	-	SAG1672	-	CBS domain-containing protein
1628	 34.58	0	1669160..1670125	+	321	22537813	-	SAG1673	-	3-hydroxybutyryl-CoA dehydrogenase
1629	 36.43	0	1670172..1670720	-	182	22537814	-	SAG1674	-	isochorismatase family protein
1630	 35.62	0	1670787..1671572	-	261	22537815	-	SAG1675	-	transcriptional repressor CodY
1631	 37.62	0	1671698..1672909	-	403	22537816	-	SAG1676	-	aminotransferase AlaT
1632	 34.66	0	1673176..1673628	+	150	22537817	-	SAG1677	-	hypothetical protein
1633	 37.17	0	1673684..1675066	-	460	22537818	-	SAG1678	-	HAD superfamily hydrolase
1634	 39.88	+1	1675135..1676097	+	320	22537819	-	SAG1679	-	asparaginase family protein
1635	 34.93	0	1676132..1677010	-	292	22537820	aroE	SAG1680	-	shikimate 5-dehydrogenase
1636	 35.41	0	1677108..1678022	-	304	22537821	-	SAG1681	-	aldo/keto reductase family oxidoreductase
1637	 36.51	0	1678313..1680328	-	671	22537822	recG	SAG1682	-	ATP-dependent DNA helicase RecG
1638	 38.53	0	1680408..1681946	-	512	22537823	-	SAG1683	-	immunogenic secreted protein, putative
1639	 37.42	0	1682039..1683139	-	366	22537824	alr	SAG1684	-	alanine racemase
1640	 36.39	0	1683136..1683495	-	119	22537825	acpS	SAG1685	-	4'-phosphopantetheinyl transferase
1641	 34.52	0	1683520..1684527	-	335	22537826	-	SAG1686	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1642	 38.39	0	1684653..1687181	-	842	22537827	secA	SAG1687	-	preprotein translocase subunit SecA
1643	 34.92	0	1687290..1688237	-	315	22537828	manA	SAG1688	-	mannose-6-phosphate isomerase, class I
1644	 36.96	0	1688355..1689236	-	293	22537829	scrK	SAG1689	-	fructokinase
1645	 37.50	0	1689304..1691223	-	639	22537830	-	SAG1690	-	PTS system, IIABC components
1646	 35.49	0	1691408..1692847	+	479	22537831	scrB	SAG1691	-	sucrose-6-phosphate hydrolase
1647	 36.97	0	1692849..1693811	+	320	22537832	scrR	SAG1692	-	sucrose operon repressor ScrR
1648	 31.95	0	1693898..1694332	-	144	22537833	nusB	SAG1693	-	transcription antitermination protein NusB
1649	 36.67	0	1694325..1694714	-	129	22537834	-	SAG1694	-	hypothetical protein
1650	 36.19	0	1694803..1695363	-	186	22537835	efp	SAG1695	-	elongation factor P
1651	 30.77	-1	1695394..1695510	-	38	22537836	-	SAG1696	-	hypothetical protein
1652	 32.65	0	1696092..1696238	-	48	22537837	-	SAG1697	-	hypothetical protein
1653	 33.33	0	1696291..1696590	-	99	22537838	-	SAG1698	-	hypothetical protein
1654	 25.81	-2	1696643..1696735	-	30	22537839	-	SAG1699	-	hypothetical protein
1655	 26.41	-2	1697008..1697238	-	76	22537840	-	SAG1700	-	hypothetical protein
1656	 26.32	-2	1697251..1697421	-	56	22537841	-	SAG1701	-	hypothetical protein
1657	 21.43	-2	1697874..1697999	-	41	22537842	-	SAG1702	-	hypothetical protein
1658	 27.27	-2	1698010..1698174	-	54	22537843	-	SAG1703	-	hypothetical protein
1659	 38.41	0	1698476..1698928	-	150	22537844	-	SAG1704	-	cytidine/deoxycytidylate deaminase family protein
1660	 35.15	0	1700107..1700823	-	238	22537845	-	SAG1706	-	hypothetical protein
1661	 38.27	0	1700825..1702324	-	499	22537846	-	SAG1707	-	EmrB/QacA family drug resistance transporter
1662	 18.80	-2	1702412..1702528	-	38	22537847	-	SAG1708	-	hypothetical protein
1663	 38.67	0	1702660..1705488	-	942	22537848	uvrA	SAG1709	-	excinuclease ABC subunit A
1664	 36.46	0	1705620..1706291	-	223	22537849	-	SAG1710	-	hypothetical protein
1665	 35.03	0	1706316..1707260	-	314	22537850	-	SAG1711	-	magnesium transporter CorA family protein
1666	 38.75	0	1707430..1707669	-	79	22537851	rpsR	SAG1712	-	30S ribosomal protein S18
1667	 38.41	0	1707714..1708205	-	163	22537852	ssb-3	SAG1713	-	single-strand DNA-binding protein
1668	 36.11	0	1708217..1708504	-	95	22537853	rpsF	SAG1714	-	30S ribosomal protein S6
1669	 38.58	0	1709598..1710722	+	374	22537854	mutY	SAG1715	-	A/G-specific adenine glycosylase
1670	 34.51	0	1710899..1711492	+	197	22537855	-	SAG1716	-	Cro/CI family transcriptional regulator
1671	 35.87	0	1711538..1711852	-	104	22537856	trx	SAG1717	-	thioredoxin
1672	 31.94	0	1711933..1712433	-	166	22537857	-	SAG1718	-	PAP2 family protein
1673	 36.79	0	1712437..1714776	-	779	22537858	-	SAG1719	-	MutS2 family protein
1674	 32.41	0	1714861..1715403	-	180	22537859	-	SAG1720	-	hypothetical protein
1675	 32.37	0	1715406..1715717	-	103	22537860	-	SAG1721	-	hypothetical protein
1676	 34.79	0	1715828..1716721	+	297	22537861	rnhC	SAG1722	-	ribonuclease HIII
1677	 37.54	0	1716737..1717330	+	197	22537862	-	SAG1723	-	signal peptidase I
1678	 34.28	0	1717459..1719879	+	806	22537863	-	SAG1724	-	helicase, putative
1679	 34.78	0	1719993..1720475	+	160	22537864	-	SAG1725	-	hypothetical protein
1680	 36.07	0	1720546..1721640	-	364	22537865	dinP	SAG1726	-	DNA polymerase IV
1681	 39.13	0	1721825..1724137	+	770	22537866	pflD-2	SAG1727	-	formate acetyltransferase
1682	 36.53	0	1724238..1724612	+	124	22537867	-	SAG1728	-	FMN-binding protein
1683	 34.41	0	1724647..1725576	-	309	22537868	-	SAG1729	-	hypothetical protein
1684	 34.92	0	1725573..1726328	-	251	22537869	-	SAG1730	-	hypothetical protein
1685	 38.35	0	1726453..1727349	+	298	22537870	-	SAG1731	-	hypothetical protein
1686	 38.87	0	1727428..1728276	-	282	22537871	-	SAG1732	-	glycerol uptake facilitator protein, putative
1687	 36.42	0	1728444..1728896	-	150	22537872	-	SAG1733	-	universal stress protein
1688	 34.58	0	1728914..1730116	-	400	22537873	-	SAG1734	-	transporter, putative
1689	 32.27	0	1730273..1730932	+	219	22537874	-	SAG1735	-	Crp/FNR family transcriptional regulator
1690	 36.18	0	1730956..1733241	+	761	22537875	pepX	SAG1736	-	x-prolyl-dipeptidyl aminopeptidase
1691	 33.06	0	1733245..1733604	+	119	22537876	-	SAG1737	-	hypothetical protein
1692	 36.60	0	1733650..1734630	+	326	22537877	-	SAG1738	-	polyprenyl synthetase family protein
1693	 36.42	0	1734715..1736463	-	582	22537878	cydC	SAG1739	-	ABC transporter, ATP-binding protein CydC
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.