IslandPathversion 1.0

IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.44 STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1518	 32.76	0	1571018..1572235	+	405	22537703	-	SAG1561	-	PTS system, IIC component, putative
1519	 32.27	0	1572219..1573061	+	280	22537704	-	SAG1562	-	hypothetical protein
1520	 39.37	+1	1573138..1573965	+	275	22537705	exoA	SAG1563	-	exodeoxyribonuclease
1521	 32.77	0	1574005..1574361	-	118	22537706	-	SAG1564	-	hypothetical protein
1522	 35.43	0	1574363..1574839	-	158	22537707	ogt	SAG1565	-	methylated-DNA--protein-cysteine S-methyltransferase
1523	 35.53	0	1574894..1576075	-	393	22537708	-	SAG1566	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
1524	 37.70	0	1576138..1576686	-	182	22537709	-	SAG1567	-	acetyltransferase
1525	 35.38	0	1577979..1578614	+	211	22537710	-	SAG1569	-	copper homeostasis protein CutC, putative
1526	 32.38	0	1578658..1578762	-	34	22537711	-	SAG1570	-	hypothetical protein
1527	 27.16	-2	1578747..1578908	+	53	22537712	-	SAG1571	-	hypothetical protein
1528	 36.11	0	1578884..1579747	-	287	22537713	-	SAG1572	-	tetrapyrrole methylase family protein
1529	 32.11	0	1579753..1580079	-	108	22537714	-	SAG1573	-	DNA replication intiation control protein YabA
1530	 34.72	0	1580109..1580972	-	287	22537715	-	SAG1574	-	DNA polymerase III subunit delta'
1531	 38.99	0	1580992..1581627	-	211	22537716	tdk	SAG1575	-	thymidylate kinase
1532	 36.36	0	1583268..1583927	-	219	22537717	-	SAG1577	-	AcuB family protein
1533	 37.27	0	1583946..1584656	-	236	22537718	livF	SAG1578	-	branched-chain amino acid ABC transporter, ATP-binding protein
1534	 35.56	0	1584656..1585420	-	254	22537719	livG	SAG1579	-	branched-chain amino acid ABC transporter, ATP-binding protein
1535	 36.16	0	1585421..1586374	-	317	22537720	-	SAG1580	-	branched-chain amino acid ABC transporter, permease protein
1536	 38.39	0	1586377..1587246	-	289	22537721	livH	SAG1581	-	branched-chain amino acid ABC transporter, permease protein
1537	 38.13	0	1587352..1588518	-	388	22537722	-	SAG1582	-	branched-chain amino acid ABC transporter, amino acid-binding protein
1538	 28.86	-1	1588673..1588918	-	81	22537723	-	SAG1583	-	hypothetical protein
1539	 38.01	0	1589092..1590225	-	377	22537724	-	SAG1584	-	IS1548 transposase
1540	 37.90	0	1590344..1590934	-	196	22537725	clpP	SAG1585	-	ATP-dependent Clp protease proteolytic subunit
1541	 39.21	0	1591059..1591688	-	209	22537726	upp	SAG1586	-	uracil phosphoribosyltransferase
1542	 32.22	0	1591798..1592967	-	389	22537727	-	SAG1587	-	aminotransferase, class I
1543	 36.43	0	1593103..1593651	-	182	22537728	-	SAG1588	-	RNA methyltransferase
1544	 34.29	0	1593824..1595176	-	450	22537729	-	SAG1589	-	amino acid permease, putative
1545	 35.63	0	1595382..1596731	+	449	22537730	trkA	SAG1590	-	potassium transporter peripheral membrane component
1546	 36.27	0	1596748..1598175	+	475	22537731	-	SAG1591	-	cation uptake protein
1547	 37.70	0	1598199..1598450	-	83	22537732	-	SAG1592	-	hypothetical protein
1548	 35.96	0	1598450..1599172	-	240	22537733	rluB	SAG1593	-	ribosomal large subunit pseudouridine synthase B
1549	 34.36	0	1599162..1599746	-	194	22537734	scpB	SAG1594	-	segregation and condensation protein B
1550	 33.90	0	1599743..1600450	-	235	22537735	scpA	SAG1595	-	segregation and condensation protein A
1551	 31.71	0	1600450..1601190	-	246	22537736	xerD	SAG1596	-	site-specific tyrosine recombinase XerD-like protein
1552	 33.76	0	1601180..1601653	-	157	22537737	-	SAG1597	-	CBS domain-containing protein
1553	 36.02	0	1601650..1602171	-	173	22537738	-	SAG1598	-	hypothetical protein
1554	 36.00	0	1602153..1603127	-	324	22537739	-	SAG1599	-	fused deoxyribonucleotide triphosphate pyrophosphatase/unknown domain-containing protein
1555	 37.86	0	1603124..1603918	-	264	22537740	murI	SAG1600	-	glutamate racemase
1556	 34.58	0	1604093..1604332	-	79	22537741	-	SAG1601	-	hypothetical protein
1557	 33.15	0	1604490..1605032	-	180	22537742	-	SAG1602	-	hypothetical protein
1558	 36.21	0	1605094..1605615	-	173	22537743	-	SAG1603	-	biotin repressor family transcriptional regulator
1559	 36.52	0	1605683..1606372	-	229	22537744	-	SAG1604	-	hypothetical protein
1560	 38.10	0	1606395..1606898	-	167	22537745	-	SAG1605	-	hypothetical protein
1561	 34.27	0	1606936..1607679	-	247	22537746	-	SAG1606	-	RNA methyltransferase
1562	 31.18	-1	1607711..1607989	+	92	22537747	-	SAG1607	-	acylphosphatase
1563	 37.51	0	1608074..1609006	+	310	22537748	-	SAG1608	-	OxaA-like protein precursor
1564	 37.39	0	1609206..1609871	-	221	22537749	-	SAG1609	-	amino acid ABC transporter, permease protein
1565	 34.50	0	1609895..1610752	-	285	22537750	-	SAG1610	-	amino acid ABC transporter, substrate-binding protein
1566	 38.33	0	1610913..1612373	-	486	22537751	-	SAG1611	-	amidase
1567	 34.58	0	1612476..1612958	-	160	22537752	greA	SAG1612	-	transcription elongation factor GreA
1568	 36.00	0	1613031..1614833	-	600	22537753	-	SAG1613	-	hypothetical protein
1569	 35.52	0	1614920..1615423	-	167	22537754	-	SAG1614	-	acetyltransferase
1570	 36.34	0	1615509..1616840	-	443	22537755	murC	SAG1615	-	UDP-N-acetylmuramate--L-alanine ligase
1571	 35.11	0	1616850..1617467	-	205	22537756	-	SAG1616	-	hypothetical protein
1572	 26.26	-2	1617472..1617570	-	32	22537757	-	SAG1617	-	hypothetical protein
1573	 34.40	0	1617632..1620730	-	1032	22537758	-	SAG1618	-	Snf2 family protein
1574	 38.01	0	1620893..1622026	-	377	22537759	-	SAG1619	-	IS1548 transposase
1575	 37.68	0	1622211..1623521	-	436	22537760	engA	SAG1620	-	GTP-binding protein EngA
1576	 36.32	0	1623569..1624471	-	300	22537761	dnaI	SAG1621	-	primosomal protein DnaI
1577	 33.42	0	1624468..1625643	-	391	22537762	-	SAG1622	-	hypothetical protein
1578	 37.92	0	1625643..1626122	-	159	22537763	-	SAG1623	-	transcriptional regulator NrdR
1579	 33.86	0	1626271..1627776	-	501	22537764	csrS	SAG1624	-	sensor histidine kinase CsrS
1580	 37.54	0	1627766..1628455	-	229	22537765	csrR	SAG1625	-	DNA-binding response regulator CsrR
1581	 33.52	0	1628690..1629223	-	177	22537766	-	SAG1626	-	hypothetical protein
1582	 39.51	+1	1629328..1630218	-	296	22537767	htpX	SAG1627	-	heat shock protein HtpX
1583	 33.87	0	1630239..1630793	-	184	22537768	lemA	SAG1628	-	hypothetical protein
1584	 34.31	0	1630921..1631634	+	237	22537769	gidB	SAG1629	-	glucose-inhibited division protein B
1585	 35.43	0	1631649..1633028	+	459	22537770	-	SAG1630	-	sodium transport family protein
1586	 37.20	0	1633041..1633712	+	223	22537771	-	SAG1631	-	Trk family potassium uptake protein , putative
1587	 32.97	0	1633747..1634577	-	276	22537772	-	SAG1632	-	cobalt transport family protein
1588	 34.53	0	1634570..1636246	-	558	22537773	-	SAG1633	-	ABC transporter, ATP-binding protein
1589	 34.43	0	1636263..1636901	-	212	22537774	-	SAG1634	-	hypothetical protein
1590	 38.05	0	1636980..1638188	-	402	22537775	-	SAG1635	-	serine/threonine transporter SstT
1591	 37.50	0	1638364..1639731	+	455	22537776	brnQ-2	SAG1636	-	branched-chain amino acid transport system II carrier protein
1592	 37.22	0	1639845..1640900	+	351	22537777	adh	SAG1637	-	alcohol dehydrogenase, zinc-containing
1593	 36.94	0	1640949..1641641	-	230	22537778	-	SAG1638	-	ABC transporter, permease protein
1594	 35.85	0	1641638..1642708	-	356	22537779	-	SAG1639	-	ABC transporter, ATP-binding protein
1595	 36.53	0	1642701..1644077	-	458	22537780	-	SAG1640	-	hypothetical protein
1596	 32.61	0	1644211..1645035	-	274	22537781	-	SAG1641	-	YaeC family protein
1597	 33.57	0	1645176..1646009	-	277	22537782	-	SAG1642	-	ABC transporter, substrate-binding protein
1598	 35.51	0	1646111..1646800	-	229	22537783	-	SAG1643	-	glutamine amidotransferase, class I
1599	 25.44	-2	1646794..1646907	-	37	22537784	-	SAG1644	-	hypothetical protein
1600	 39.61	+1	1646955..1647671	-	238	22537785	-	SAG1645	-	hypothetical protein
1601	 30.30	-1	1647697..1647795	-	32	22537786	-	SAG1646	-	hypothetical protein
1602	 36.88	0	1647789..1648775	-	328	22537787	-	SAG1647	-	dihydroxyacetone kinase family protein
1603	 25.70	-2	1648785..1649321	-	178	22537788	-	SAG1648	-	TetR family transcriptional regulator
1604	 28.95	-1	1649385..1649498	+	37	22537789	-	SAG1649	-	hypothetical protein
1605	 39.49	+1	1649495..1650484	+	329	22537790	-	SAG1650	-	dihydroxyacetone kinase family protein
1606	 39.03	0	1650522..1651100	+	192	22537791	-	SAG1651	-	dihydroxyacetone kinase family protein
1607	 34.93	0	1651100..1651474	+	124	22537792	-	SAG1652	-	hypothetical protein
1608	 41.18	+1	1651484..1652197	+	237	22537793	glpF-2	SAG1653	-	glycerol uptake facilitator protein
1609	 37.53	0	1652462..1652866	-	134	22537794	-	SAG1654	-	hypothetical protein
1610	 32.91	0	1653005..1653718	-	237	22537795	-	SAG1655	-	MerR family transcriptional regulator
1611	 38.38	0	1653811..1654920	-	369	22537796	-	SAG1656	-	hypothetical protein
1612	 28.57	-1	1654917..1655168	-	83	22537797	-	SAG1657	-	hypothetical protein
1613	 34.83	0	1655191..1655925	-	244	22537798	-	SAG1658	-	hypothetical protein
1614	 40.34	+1	1655991..1656347	-	118	22537799	-	SAG1659	-	iojap-related protein
1615	 32.18	0	1656349..1656870	-	173	22537800	-	SAG1660	-	isochorismatase family protein
1616	 36.73	0	1656933..1657520	-	195	22537801	-	SAG1661	-	hypothetical protein
1617	 35.70	0	1657517..1658149	-	210	22537802	nadD	SAG1662	-	nicotinic acid mononucleotide adenylyltransferase
35.44	MEAN

3.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.