IslandPathversion 1.0

IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.44 STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1454	 35.74	0	1514446..1514778	-	110	22537639	-	SAG1496	-	hypothetical protein
1455	 28.07	-1	1514880..1514993	-	37	22537640	-	SAG1497	-	hypothetical protein
1456	 26.87	-2	1515157..1515558	-	133	22537641	-	SAG1498	-	hypothetical protein
1457	 36.33	0	1515795..1516694	-	299	22537642	era	SAG1499	-	GTP-binding protein Era
1458	 32.58	0	1516736..1517134	-	132	22537643	dgkA	SAG1500	-	diacylglycerol kinase
1459	 33.95	0	1517115..1517600	-	161	22537644	-	SAG1501	-	putative metalloprotease
1460	 32.47	0	1518007..1518813	-	268	22537645	-	SAG1502	-	tetracenomycin polyketide synthesis O-methyltransferase TcmP, putative
1461	 30.00	-1	1518858..1518977	-	39	22537646	-	SAG1503	-	hypothetical protein
1462	 26.50	-2	1519014..1519130	-	38	22537647	-	SAG1504	-	hypothetical protein
1463	 33.33	0	1519135..1519611	-	158	22537648	-	SAG1505	-	MutT/nudix family protein
1464	 34.20	0	1519803..1520606	+	267	22537649	-	SAG1506	-	hypothetical protein
1465	 36.51	0	1520697..1521734	-	345	22537650	-	SAG1507	-	PhoH family protein
1466	 36.04	0	1521807..1523579	-	590	22537651	-	SAG1508	-	67 kDa Myosin-crossreactive streptococcal antigen
1467	 31.94	0	1523736..1523951	-	71	22537652	-	SAG1509	-	hypothetical protein
1468	 38.43	0	1523948..1524457	-	169	22537653	msrA	SAG1510	-	methionine sulfoxide reductase A
1469	 36.61	0	1524595..1525449	-	284	22537654	-	SAG1511	-	hypothetical protein
1470	 35.84	0	1525567..1526124	-	185	22537655	frr	SAG1512	-	ribosome recycling factor
1471	 39.92	+1	1526140..1526868	-	242	22537656	pyrH	SAG1513	-	uridylate kinase
1472	 33.04	0	1526989..1527669	-	226	22537657	-	SAG1514	-	peptide ABC transporter, ATP-binding protein
1473	 35.61	0	1527656..1528444	-	262	22537658	-	SAG1515	-	peptide ABC transporter, ATP-binding protein
1474	 34.38	0	1528432..1529199	-	255	22537659	-	SAG1516	-	peptide ABC transporter, permease protein
1475	 34.92	0	1529238..1530182	-	314	22537660	-	SAG1517	-	peptide ABC transporter, permease protein
1476	 35.50	0	1530169..1531785	-	538	22537661	-	SAG1518	-	peptide ABC transporter, peptide-binding protein
1477	 38.55	0	1532174..1532863	-	229	22537662	rplA	SAG1519	-	50S ribosomal protein L1
1478	 39.44	+1	1532967..1533392	-	141	22537663	rplK	SAG1520	-	50S ribosomal protein L11
1479	 41.47	+1	1533654..1534820	+	388	22537664	-	SAG1521	-	IS30 family transposase
1480	 34.78	0	1535154..1536536	-	460	22537665	-	SAG1522	-	major facilitator transporter
1481	 39.92	+1	1536544..1537758	-	404	22537666	-	SAG1523	-	M20/M25/M40 family peptidase
1482	 36.05	0	1538037..1538921	+	294	22537667	-	SAG1524	-	LysR family transcriptional regulator
1483	 24.86	-2	1538982..1539335	+	117	22537668	-	SAG1525	-	hypothetical protein
1484	 38.18	0	1539406..1539942	+	178	22537669	-	SAG1526	-	IS861, transposase OrfA
1485	 41.97	+1	1539918..1540751	+	277	22537670	-	SAG1527	-	IS861, transposase OrfB
1486	 34.85	0	1540800..1542515	-	571	22537671	-	SAG1528	-	chorismate binding enzyme
1487	 37.82	0	1542597..1545047	-	816	22537672	-	SAG1529	-	FtsK/SpoIIIE family protein
1488	 34.20	0	1545213..1546016	+	267	22537673	-	SAG1530	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
1489	 31.18	-1	1546068..1546901	-	277	22537674	-	SAG1531	-	manganese ABC transporter, permease protein
1490	 36.40	0	1546903..1547619	-	238	22537675	-	SAG1532	-	manganese ABC transporter, ATP-binding protein
1491	 33.12	0	1547790..1548716	-	308	22537676	-	SAG1533	-	manganese ABC transporter, manganese-binding adhesion liprotein
1492	 33.64	0	1548883..1549530	+	215	22537677	-	SAG1534	-	iron-dependent transcriptional regulator
1493	 38.12	0	1549570..1550259	-	229	22537678	pfs	SAG1535	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
1494	 31.85	0	1550269..1550538	-	89	22537679	-	SAG1536	-	hypothetical protein
1495	 37.30	0	1550538..1551092	-	184	22537680	-	SAG1537	-	MutT/nudix family protein
1496	 36.81	0	1551113..1552492	-	459	22537681	glmU	SAG1538	-	UDP-N-acetylglucosamine pyrophosphorylase
1497	 29.17	-1	1552634..1552729	+	31	22537682	-	SAG1539	-	hypothetical protein
1498	 38.16	0	1552736..1553149	-	137	22537683	-	SAG1540	-	hypothetical protein
1499	 34.39	0	1553162..1553539	-	125	22537684	-	SAG1541	-	glyoxalase family protein
1500	 35.42	0	1553628..1554584	-	318	22537685	-	SAG1542	-	Gfo/Idh/MocA family oxidoreductase
1501	 38.77	0	1555271..1555969	-	232	22537686	fabG	SAG1544	-	3-ketoacyl-(acyl-carrier-protein) reductase
1502	 37.55	0	1555962..1556198	-	78	22537687	-	SAG1545	-	hypothetical protein
1503	 30.12	-1	1556288..1556536	-	82	22537688	-	SAG1546	-	hypothetical protein
1504	 35.53	0	1556734..1557234	-	166	22537689	-	SAG1547	-	acetyltransferase
1505	 34.28	0	1557474..1558742	-	422	22537690	-	SAG1548	-	glycosyl transferase, group 2 family protein
1506	 39.06	0	1558750..1559133	+	127	22537691	-	SAG1549	-	IS1381 transposase protein A
1507	 38.46	0	1559166..1559555	+	129	22537692	-	SAG1550	-	IS1381 transposase protein B
1508	 29.90	-1	1559544..1559747	-	67	22537693	-	SAG1551	-	hypothetical protein
1509	 35.05	0	1559887..1562046	-	719	22537694	-	SAG1552	-	hypothetical protein
1510	 33.75	0	1562053..1563486	-	477	22537695	-	SAG1553	-	hypothetical protein
1511	 34.07	0	1563491..1564168	-	225	22537696	-	SAG1554	-	hypothetical protein
1512	 32.18	0	1564220..1564915	-	231	22537697	-	SAG1555	-	hypothetical protein
1513	 34.90	0	1565281..1566618	-	445	22537698	brnQ-1	SAG1556	-	branched-chain amino acid transport system II carrier protein
1514	 38.69	0	1566814..1568811	-	665	22537699	metG	SAG1557	-	methionyl-tRNA synthetase
1515	 36.87	0	1568954..1569829	+	291	22537700	tehB	SAG1558	-	tellurite resistance protein TehB
1516	 34.34	0	1569987..1570682	-	231	22537701	-	SAG1559	-	hypothetical protein
1517	 28.46	-1	1570697..1570819	-	40	22537702	-	SAG1560	-	hypothetical protein
1518	 32.76	0	1571018..1572235	+	405	22537703	-	SAG1561	-	PTS system, IIC component, putative
1519	 32.27	0	1572219..1573061	+	280	22537704	-	SAG1562	-	hypothetical protein
1520	 39.37	+1	1573138..1573965	+	275	22537705	exoA	SAG1563	-	exodeoxyribonuclease
1521	 32.77	0	1574005..1574361	-	118	22537706	-	SAG1564	-	hypothetical protein
1522	 35.43	0	1574363..1574839	-	158	22537707	ogt	SAG1565	-	methylated-DNA--protein-cysteine S-methyltransferase
1523	 35.53	0	1574894..1576075	-	393	22537708	-	SAG1566	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
1524	 37.70	0	1576138..1576686	-	182	22537709	-	SAG1567	-	acetyltransferase
1525	 35.38	0	1577979..1578614	+	211	22537710	-	SAG1569	-	copper homeostasis protein CutC, putative
1526	 32.38	0	1578658..1578762	-	34	22537711	-	SAG1570	-	hypothetical protein
1527	 27.16	-2	1578747..1578908	+	53	22537712	-	SAG1571	-	hypothetical protein
1528	 36.11	0	1578884..1579747	-	287	22537713	-	SAG1572	-	tetrapyrrole methylase family protein
1529	 32.11	0	1579753..1580079	-	108	22537714	-	SAG1573	-	DNA replication intiation control protein YabA
1530	 34.72	0	1580109..1580972	-	287	22537715	-	SAG1574	-	DNA polymerase III subunit delta'
1531	 38.99	0	1580992..1581627	-	211	22537716	tdk	SAG1575	-	thymidylate kinase
1532	 36.36	0	1583268..1583927	-	219	22537717	-	SAG1577	-	AcuB family protein
1533	 37.27	0	1583946..1584656	-	236	22537718	livF	SAG1578	-	branched-chain amino acid ABC transporter, ATP-binding protein
1534	 35.56	0	1584656..1585420	-	254	22537719	livG	SAG1579	-	branched-chain amino acid ABC transporter, ATP-binding protein
1535	 36.16	0	1585421..1586374	-	317	22537720	-	SAG1580	-	branched-chain amino acid ABC transporter, permease protein
1536	 38.39	0	1586377..1587246	-	289	22537721	livH	SAG1581	-	branched-chain amino acid ABC transporter, permease protein
1537	 38.13	0	1587352..1588518	-	388	22537722	-	SAG1582	-	branched-chain amino acid ABC transporter, amino acid-binding protein
1538	 28.86	-1	1588673..1588918	-	81	22537723	-	SAG1583	-	hypothetical protein
1539	 38.01	0	1589092..1590225	-	377	22537724	-	SAG1584	-	IS1548 transposase
1540	 37.90	0	1590344..1590934	-	196	22537725	clpP	SAG1585	-	ATP-dependent Clp protease proteolytic subunit
1541	 39.21	0	1591059..1591688	-	209	22537726	upp	SAG1586	-	uracil phosphoribosyltransferase
1542	 32.22	0	1591798..1592967	-	389	22537727	-	SAG1587	-	aminotransferase, class I
1543	 36.43	0	1593103..1593651	-	182	22537728	-	SAG1588	-	RNA methyltransferase
1544	 34.29	0	1593824..1595176	-	450	22537729	-	SAG1589	-	amino acid permease, putative
1545	 35.63	0	1595382..1596731	+	449	22537730	trkA	SAG1590	-	potassium transporter peripheral membrane component
1546	 36.27	0	1596748..1598175	+	475	22537731	-	SAG1591	-	cation uptake protein
1547	 37.70	0	1598199..1598450	-	83	22537732	-	SAG1592	-	hypothetical protein
1548	 35.96	0	1598450..1599172	-	240	22537733	rluB	SAG1593	-	ribosomal large subunit pseudouridine synthase B
1549	 34.36	0	1599162..1599746	-	194	22537734	scpB	SAG1594	-	segregation and condensation protein B
1550	 33.90	0	1599743..1600450	-	235	22537735	scpA	SAG1595	-	segregation and condensation protein A
1551	 31.71	0	1600450..1601190	-	246	22537736	xerD	SAG1596	-	site-specific tyrosine recombinase XerD-like protein
1552	 33.76	0	1601180..1601653	-	157	22537737	-	SAG1597	-	CBS domain-containing protein
1553	 36.02	0	1601650..1602171	-	173	22537738	-	SAG1598	-	hypothetical protein
35.44	MEAN

3.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.