IslandPathversion 1.0

IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.44 STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1412	 31.91	0	1467525..1469069	-	514	22537597	-	SAG1452	-	hypothetical protein
1413	 32.60	0	1469069..1470298	-	409	22537598	secY	SAG1453	-	preprotein translocase subunit SecY
1414	 32.66	0	1470422..1471618	-	398	22537599	-	SAG1454	-	hypothetical protein
1415	 32.66	0	1471679..1472566	-	295	22537600	-	SAG1455	-	glycosyl transferase, group 2 family protein
1416	 38.46	0	1473647..1474036	-	129	22537601	-	SAG1457	-	IS1381 transposase protein B
1417	 39.06	0	1474069..1474452	-	127	22537602	-	SAG1458	-	IS1381 transposase protein A
1418	 31.16	-1	1474581..1475822	-	413	22537603	-	SAG1459	-	glycosyl transferase family protein
1419	 32.01	0	1475819..1477024	-	401	22537604	-	SAG1460	-	glycosyl transferase family protein
1420	 36.81	0	1477033..1478040	-	335	22537605	-	SAG1461	-	hypothetical protein
1421	 41.26	+1	1478371..1481283	-	970	22537606	-	SAG1462	-	cell wall surface anchor family protein
1422	 37.15	0	1483259..1485250	-	663	22537607	uvrB	SAG1464	-	excinuclease ABC subunit B
1423	 34.85	0	1485311..1486231	-	306	22537608	-	SAG1465	-	protease, putative
1424	 36.72	0	1486414..1488597	+	727	22537609	glnP	SAG1466	-	glutamine ABC transporter, glutamine-binding protein/permease protein
1425	 37.11	0	1488597..1489337	+	246	22537610	-	SAG1467	-	glutamine ABC transporter, ATP-binding protein, GlnQ putative
1426	 25.36	-2	1489486..1489836	+	116	22537611	-	SAG1468	-	hypothetical protein
1427	 34.59	0	1489928..1490086	-	52	22537612	-	SAG1469	-	hypothetical protein
1428	 41.28	+1	1490112..1491419	-	435	161485613	obgE	SAG1470	-	GTPase ObgE
1429	 34.88	0	1491486..1491614	-	42	22537614	-	SAG1471	-	hypothetical protein
1430	 38.65	0	1491811..1493052	+	413	22537615	pepS	SAG1472	-	aminopeptidase PepS
1431	 35.92	0	1493086..1493664	-	192	22537616	-	SAG1473	-	cell wall surface anchor family protein
1432	 36.22	0	1493774..1495816	-	680	22537617	-	SAG1474	-	amidase family protein
1433	 33.47	0	1495901..1496623	-	240	22537618	rsuA	SAG1475	-	ribosomal small subunit pseudouridine synthase A
1434	 34.99	0	1496814..1497656	-	280	22537619	-	SAG1476	-	aldo/keto reductase family oxidoreductase
1435	 37.19	0	1497923..1498597	+	224	22537620	-	SAG1477	-	nitroreductase family protein
1436	 35.37	0	1498685..1499077	+	130	22537621	gloA	SAG1478	-	lactoylglutathione lyase
1437	 36.14	0	1499206..1500132	+	308	22537622	-	SAG1479	-	glycosyl transferase, group 2 family protein
1438	 37.37	0	1500261..1501649	+	462	22537623	-	SAG1480	-	amino acid permease
1439	 35.47	0	1501733..1502200	-	155	22537624	smpB	SAG1481	-	SsrA-binding protein
1440	 37.70	0	1502203..1504608	-	801	22537625	vacB	SAG1482	-	VacB/Rnb family exoribonuclease
1441	 32.07	0	1504721..1504957	-	78	22537626	secG	SAG1483	-	preprotein translocase subunit SecG
1442	 30.61	-1	1505004..1505150	-	48	22537627	rpmG	SAG1484	-	50S ribosomal protein L33
1443	 37.09	0	1505147..1506316	-	389	22537628	-	SAG1485	-	multi-drug resistance protein
1444	 30.30	-1	1506512..1508158	-	548	22537629	-	SAG1486	-	hypothetical protein
1445	 34.05	0	1508148..1508849	-	233	22537630	-	SAG1487	-	ABC transporter, ATP binding protein
1446	 34.52	0	1508973..1509560	-	195	22537631	coaE	SAG1488	-	dephospho-CoA kinase
1447	 36.50	0	1509557..1510378	-	273	22537632	mutM	SAG1489	-	formamidopyrimidine-DNA glycosylase
1448	 29.68	-1	1510527..1511375	-	282	22537633	-	SAG1490	-	MutR family transcriptional regulator
1449	 34.97	0	1511592..1513184	+	530	22537634	-	SAG1491	-	hypothetical protein
1450	 37.85	0	1513220..1513396	+	58	22537635	-	SAG1492	-	hypothetical protein
1451	 31.84	0	1513447..1513647	-	66	22537636	-	SAG1493	-	hypothetical protein
1452	 30.30	-1	1513840..1513938	-	32	22537637	-	SAG1494	-	hypothetical protein
1453	 34.96	0	1514173..1514418	-	81	22537638	-	SAG1495	-	CAAX amino terminal protease family protein
1454	 35.74	0	1514446..1514778	-	110	22537639	-	SAG1496	-	hypothetical protein
1455	 28.07	-1	1514880..1514993	-	37	22537640	-	SAG1497	-	hypothetical protein
1456	 26.87	-2	1515157..1515558	-	133	22537641	-	SAG1498	-	hypothetical protein
1457	 36.33	0	1515795..1516694	-	299	22537642	era	SAG1499	-	GTP-binding protein Era
1458	 32.58	0	1516736..1517134	-	132	22537643	dgkA	SAG1500	-	diacylglycerol kinase
1459	 33.95	0	1517115..1517600	-	161	22537644	-	SAG1501	-	putative metalloprotease
1460	 32.47	0	1518007..1518813	-	268	22537645	-	SAG1502	-	tetracenomycin polyketide synthesis O-methyltransferase TcmP, putative
1461	 30.00	-1	1518858..1518977	-	39	22537646	-	SAG1503	-	hypothetical protein
1462	 26.50	-2	1519014..1519130	-	38	22537647	-	SAG1504	-	hypothetical protein
1463	 33.33	0	1519135..1519611	-	158	22537648	-	SAG1505	-	MutT/nudix family protein
1464	 34.20	0	1519803..1520606	+	267	22537649	-	SAG1506	-	hypothetical protein
1465	 36.51	0	1520697..1521734	-	345	22537650	-	SAG1507	-	PhoH family protein
1466	 36.04	0	1521807..1523579	-	590	22537651	-	SAG1508	-	67 kDa Myosin-crossreactive streptococcal antigen
1467	 31.94	0	1523736..1523951	-	71	22537652	-	SAG1509	-	hypothetical protein
1468	 38.43	0	1523948..1524457	-	169	22537653	msrA	SAG1510	-	methionine sulfoxide reductase A
1469	 36.61	0	1524595..1525449	-	284	22537654	-	SAG1511	-	hypothetical protein
1470	 35.84	0	1525567..1526124	-	185	22537655	frr	SAG1512	-	ribosome recycling factor
1471	 39.92	+1	1526140..1526868	-	242	22537656	pyrH	SAG1513	-	uridylate kinase
1472	 33.04	0	1526989..1527669	-	226	22537657	-	SAG1514	-	peptide ABC transporter, ATP-binding protein
1473	 35.61	0	1527656..1528444	-	262	22537658	-	SAG1515	-	peptide ABC transporter, ATP-binding protein
1474	 34.38	0	1528432..1529199	-	255	22537659	-	SAG1516	-	peptide ABC transporter, permease protein
1475	 34.92	0	1529238..1530182	-	314	22537660	-	SAG1517	-	peptide ABC transporter, permease protein
1476	 35.50	0	1530169..1531785	-	538	22537661	-	SAG1518	-	peptide ABC transporter, peptide-binding protein
1477	 38.55	0	1532174..1532863	-	229	22537662	rplA	SAG1519	-	50S ribosomal protein L1
1478	 39.44	+1	1532967..1533392	-	141	22537663	rplK	SAG1520	-	50S ribosomal protein L11
1479	 41.47	+1	1533654..1534820	+	388	22537664	-	SAG1521	-	IS30 family transposase
1480	 34.78	0	1535154..1536536	-	460	22537665	-	SAG1522	-	major facilitator transporter
1481	 39.92	+1	1536544..1537758	-	404	22537666	-	SAG1523	-	M20/M25/M40 family peptidase
1482	 36.05	0	1538037..1538921	+	294	22537667	-	SAG1524	-	LysR family transcriptional regulator
1483	 24.86	-2	1538982..1539335	+	117	22537668	-	SAG1525	-	hypothetical protein
1484	 38.18	0	1539406..1539942	+	178	22537669	-	SAG1526	-	IS861, transposase OrfA
1485	 41.97	+1	1539918..1540751	+	277	22537670	-	SAG1527	-	IS861, transposase OrfB
1486	 34.85	0	1540800..1542515	-	571	22537671	-	SAG1528	-	chorismate binding enzyme
1487	 37.82	0	1542597..1545047	-	816	22537672	-	SAG1529	-	FtsK/SpoIIIE family protein
1488	 34.20	0	1545213..1546016	+	267	22537673	-	SAG1530	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
1489	 31.18	-1	1546068..1546901	-	277	22537674	-	SAG1531	-	manganese ABC transporter, permease protein
1490	 36.40	0	1546903..1547619	-	238	22537675	-	SAG1532	-	manganese ABC transporter, ATP-binding protein
1491	 33.12	0	1547790..1548716	-	308	22537676	-	SAG1533	-	manganese ABC transporter, manganese-binding adhesion liprotein
1492	 33.64	0	1548883..1549530	+	215	22537677	-	SAG1534	-	iron-dependent transcriptional regulator
1493	 38.12	0	1549570..1550259	-	229	22537678	pfs	SAG1535	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
1494	 31.85	0	1550269..1550538	-	89	22537679	-	SAG1536	-	hypothetical protein
1495	 37.30	0	1550538..1551092	-	184	22537680	-	SAG1537	-	MutT/nudix family protein
1496	 36.81	0	1551113..1552492	-	459	22537681	glmU	SAG1538	-	UDP-N-acetylglucosamine pyrophosphorylase
1497	 29.17	-1	1552634..1552729	+	31	22537682	-	SAG1539	-	hypothetical protein
1498	 38.16	0	1552736..1553149	-	137	22537683	-	SAG1540	-	hypothetical protein
1499	 34.39	0	1553162..1553539	-	125	22537684	-	SAG1541	-	glyoxalase family protein
1500	 35.42	0	1553628..1554584	-	318	22537685	-	SAG1542	-	Gfo/Idh/MocA family oxidoreductase
1501	 38.77	0	1555271..1555969	-	232	22537686	fabG	SAG1544	-	3-ketoacyl-(acyl-carrier-protein) reductase
1502	 37.55	0	1555962..1556198	-	78	22537687	-	SAG1545	-	hypothetical protein
1503	 30.12	-1	1556288..1556536	-	82	22537688	-	SAG1546	-	hypothetical protein
1504	 35.53	0	1556734..1557234	-	166	22537689	-	SAG1547	-	acetyltransferase
1505	 34.28	0	1557474..1558742	-	422	22537690	-	SAG1548	-	glycosyl transferase, group 2 family protein
1506	 39.06	0	1558750..1559133	+	127	22537691	-	SAG1549	-	IS1381 transposase protein A
1507	 38.46	0	1559166..1559555	+	129	22537692	-	SAG1550	-	IS1381 transposase protein B
1508	 29.90	-1	1559544..1559747	-	67	22537693	-	SAG1551	-	hypothetical protein
1509	 35.05	0	1559887..1562046	-	719	22537694	-	SAG1552	-	hypothetical protein
1510	 33.75	0	1562053..1563486	-	477	22537695	-	SAG1553	-	hypothetical protein
1511	 34.07	0	1563491..1564168	-	225	22537696	-	SAG1554	-	hypothetical protein
35.44	MEAN

3.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.