IslandPathversion 1.0

IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.44 STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1389	 34.39	0	1440385..1440762	+	125	22537574	mscL	SAG1428	-	large conductance mechanosensitive channel protein
1390	 36.72	0	1440859..1441035	-	58	22537575	rpsU	SAG1429	-	30S ribosomal protein S21
1391	 32.14	0	1441139..1441642	-	167	22537576	-	SAG1430	-	hypothetical protein
1392	 35.94	0	1441725..1442531	-	268	22537577	-	SAG1431	-	amino acid ABC transporter, amino acid-binding protein
1393	 35.82	0	1442856..1443899	-	347	22537578	-	SAG1432	-	ammonium transporter family protein
1394	 35.11	0	1443979..1445106	+	375	22537579	-	SAG1433	-	hypothetical protein
1395	 37.59	0	1445143..1446129	-	328	22537580	-	SAG1434	-	hypothetical protein
1396	 32.68	0	1446292..1446597	+	101	22537581	-	SAG1435	-	hypothetical protein
1397	 37.12	0	1446755..1448128	-	457	22537582	-	SAG1436	-	glycerol-3-phosphate transporter, putative
1398	 20.83	-2	1448236..1448403	+	55	22537583	-	SAG1437	-	hypothetical protein
1399	 32.80	0	1448544..1450808	-	754	22537584	glgP	SAG1438	-	glycogen phosphorylase
1400	 37.01	0	1450820..1452316	-	498	22537585	malQ	SAG1439	-	4-alpha-glucanotransferase
1401	 33.82	0	1452437..1453465	-	342	22537586	-	SAG1440	-	maltose operon repressor MalR, putative
1402	 36.94	0	1453721..1454968	+	415	22537587	-	SAG1441	-	maltose/maltodextrin ABC transporter, maltose/maltodextrin-binding protein
1403	 35.38	0	1455066..1456436	+	456	22537588	-	SAG1442	-	maltose ABC transporter, permease protein
1404	 35.96	0	1456436..1457272	+	278	22537589	-	SAG1443	-	maltose ABC transporter, permease protein
1405	 36.59	0	1457503..1458975	+	490	22537590	-	SAG1444	-	proton/peptide symporter family protein
1406	 27.51	-2	1459557..1459745	-	62	22537591	-	SAG1446	-	hypothetical protein
1407	 31.75	0	1459756..1461081	-	441	22537592	-	SAG1447	-	hypothetical protein
1408	 33.80	0	1461074..1462582	-	502	22537593	-	SAG1448	-	glycosyl transferase, group 1 family protein
1409	 36.47	0	1462596..1464983	-	795	22537594	-	SAG1449	-	preprotein translocase subunit SecA
1410	 31.72	0	1464970..1465962	-	330	22537595	-	SAG1450	-	hypothetical protein
1411	 34.81	0	1465959..1467443	-	494	22537596	-	SAG1451	-	hypothetical protein
1412	 31.91	0	1467525..1469069	-	514	22537597	-	SAG1452	-	hypothetical protein
1413	 32.60	0	1469069..1470298	-	409	22537598	secY	SAG1453	-	preprotein translocase subunit SecY
1414	 32.66	0	1470422..1471618	-	398	22537599	-	SAG1454	-	hypothetical protein
1415	 32.66	0	1471679..1472566	-	295	22537600	-	SAG1455	-	glycosyl transferase, group 2 family protein
1416	 38.46	0	1473647..1474036	-	129	22537601	-	SAG1457	-	IS1381 transposase protein B
1417	 39.06	0	1474069..1474452	-	127	22537602	-	SAG1458	-	IS1381 transposase protein A
1418	 31.16	-1	1474581..1475822	-	413	22537603	-	SAG1459	-	glycosyl transferase family protein
1419	 32.01	0	1475819..1477024	-	401	22537604	-	SAG1460	-	glycosyl transferase family protein
1420	 36.81	0	1477033..1478040	-	335	22537605	-	SAG1461	-	hypothetical protein
1421	 41.26	+1	1478371..1481283	-	970	22537606	-	SAG1462	-	cell wall surface anchor family protein
1422	 37.15	0	1483259..1485250	-	663	22537607	uvrB	SAG1464	-	excinuclease ABC subunit B
1423	 34.85	0	1485311..1486231	-	306	22537608	-	SAG1465	-	protease, putative
1424	 36.72	0	1486414..1488597	+	727	22537609	glnP	SAG1466	-	glutamine ABC transporter, glutamine-binding protein/permease protein
1425	 37.11	0	1488597..1489337	+	246	22537610	-	SAG1467	-	glutamine ABC transporter, ATP-binding protein, GlnQ putative
1426	 25.36	-2	1489486..1489836	+	116	22537611	-	SAG1468	-	hypothetical protein
1427	 34.59	0	1489928..1490086	-	52	22537612	-	SAG1469	-	hypothetical protein
1428	 41.28	+1	1490112..1491419	-	435	161485613	obgE	SAG1470	-	GTPase ObgE
1429	 34.88	0	1491486..1491614	-	42	22537614	-	SAG1471	-	hypothetical protein
1430	 38.65	0	1491811..1493052	+	413	22537615	pepS	SAG1472	-	aminopeptidase PepS
1431	 35.92	0	1493086..1493664	-	192	22537616	-	SAG1473	-	cell wall surface anchor family protein
1432	 36.22	0	1493774..1495816	-	680	22537617	-	SAG1474	-	amidase family protein
1433	 33.47	0	1495901..1496623	-	240	22537618	rsuA	SAG1475	-	ribosomal small subunit pseudouridine synthase A
1434	 34.99	0	1496814..1497656	-	280	22537619	-	SAG1476	-	aldo/keto reductase family oxidoreductase
1435	 37.19	0	1497923..1498597	+	224	22537620	-	SAG1477	-	nitroreductase family protein
1436	 35.37	0	1498685..1499077	+	130	22537621	gloA	SAG1478	-	lactoylglutathione lyase
1437	 36.14	0	1499206..1500132	+	308	22537622	-	SAG1479	-	glycosyl transferase, group 2 family protein
1438	 37.37	0	1500261..1501649	+	462	22537623	-	SAG1480	-	amino acid permease
1439	 35.47	0	1501733..1502200	-	155	22537624	smpB	SAG1481	-	SsrA-binding protein
1440	 37.70	0	1502203..1504608	-	801	22537625	vacB	SAG1482	-	VacB/Rnb family exoribonuclease
1441	 32.07	0	1504721..1504957	-	78	22537626	secG	SAG1483	-	preprotein translocase subunit SecG
1442	 30.61	-1	1505004..1505150	-	48	22537627	rpmG	SAG1484	-	50S ribosomal protein L33
1443	 37.09	0	1505147..1506316	-	389	22537628	-	SAG1485	-	multi-drug resistance protein
1444	 30.30	-1	1506512..1508158	-	548	22537629	-	SAG1486	-	hypothetical protein
1445	 34.05	0	1508148..1508849	-	233	22537630	-	SAG1487	-	ABC transporter, ATP binding protein
1446	 34.52	0	1508973..1509560	-	195	22537631	coaE	SAG1488	-	dephospho-CoA kinase
1447	 36.50	0	1509557..1510378	-	273	22537632	mutM	SAG1489	-	formamidopyrimidine-DNA glycosylase
1448	 29.68	-1	1510527..1511375	-	282	22537633	-	SAG1490	-	MutR family transcriptional regulator
1449	 34.97	0	1511592..1513184	+	530	22537634	-	SAG1491	-	hypothetical protein
1450	 37.85	0	1513220..1513396	+	58	22537635	-	SAG1492	-	hypothetical protein
1451	 31.84	0	1513447..1513647	-	66	22537636	-	SAG1493	-	hypothetical protein
1452	 30.30	-1	1513840..1513938	-	32	22537637	-	SAG1494	-	hypothetical protein
1453	 34.96	0	1514173..1514418	-	81	22537638	-	SAG1495	-	CAAX amino terminal protease family protein
1454	 35.74	0	1514446..1514778	-	110	22537639	-	SAG1496	-	hypothetical protein
1455	 28.07	-1	1514880..1514993	-	37	22537640	-	SAG1497	-	hypothetical protein
1456	 26.87	-2	1515157..1515558	-	133	22537641	-	SAG1498	-	hypothetical protein
1457	 36.33	0	1515795..1516694	-	299	22537642	era	SAG1499	-	GTP-binding protein Era
1458	 32.58	0	1516736..1517134	-	132	22537643	dgkA	SAG1500	-	diacylglycerol kinase
1459	 33.95	0	1517115..1517600	-	161	22537644	-	SAG1501	-	putative metalloprotease
1460	 32.47	0	1518007..1518813	-	268	22537645	-	SAG1502	-	tetracenomycin polyketide synthesis O-methyltransferase TcmP, putative
1461	 30.00	-1	1518858..1518977	-	39	22537646	-	SAG1503	-	hypothetical protein
1462	 26.50	-2	1519014..1519130	-	38	22537647	-	SAG1504	-	hypothetical protein
1463	 33.33	0	1519135..1519611	-	158	22537648	-	SAG1505	-	MutT/nudix family protein
1464	 34.20	0	1519803..1520606	+	267	22537649	-	SAG1506	-	hypothetical protein
1465	 36.51	0	1520697..1521734	-	345	22537650	-	SAG1507	-	PhoH family protein
1466	 36.04	0	1521807..1523579	-	590	22537651	-	SAG1508	-	67 kDa Myosin-crossreactive streptococcal antigen
1467	 31.94	0	1523736..1523951	-	71	22537652	-	SAG1509	-	hypothetical protein
1468	 38.43	0	1523948..1524457	-	169	22537653	msrA	SAG1510	-	methionine sulfoxide reductase A
1469	 36.61	0	1524595..1525449	-	284	22537654	-	SAG1511	-	hypothetical protein
1470	 35.84	0	1525567..1526124	-	185	22537655	frr	SAG1512	-	ribosome recycling factor
1471	 39.92	+1	1526140..1526868	-	242	22537656	pyrH	SAG1513	-	uridylate kinase
1472	 33.04	0	1526989..1527669	-	226	22537657	-	SAG1514	-	peptide ABC transporter, ATP-binding protein
1473	 35.61	0	1527656..1528444	-	262	22537658	-	SAG1515	-	peptide ABC transporter, ATP-binding protein
1474	 34.38	0	1528432..1529199	-	255	22537659	-	SAG1516	-	peptide ABC transporter, permease protein
1475	 34.92	0	1529238..1530182	-	314	22537660	-	SAG1517	-	peptide ABC transporter, permease protein
1476	 35.50	0	1530169..1531785	-	538	22537661	-	SAG1518	-	peptide ABC transporter, peptide-binding protein
1477	 38.55	0	1532174..1532863	-	229	22537662	rplA	SAG1519	-	50S ribosomal protein L1
1478	 39.44	+1	1532967..1533392	-	141	22537663	rplK	SAG1520	-	50S ribosomal protein L11
1479	 41.47	+1	1533654..1534820	+	388	22537664	-	SAG1521	-	IS30 family transposase
1480	 34.78	0	1535154..1536536	-	460	22537665	-	SAG1522	-	major facilitator transporter
1481	 39.92	+1	1536544..1537758	-	404	22537666	-	SAG1523	-	M20/M25/M40 family peptidase
1482	 36.05	0	1538037..1538921	+	294	22537667	-	SAG1524	-	LysR family transcriptional regulator
1483	 24.86	-2	1538982..1539335	+	117	22537668	-	SAG1525	-	hypothetical protein
1484	 38.18	0	1539406..1539942	+	178	22537669	-	SAG1526	-	IS861, transposase OrfA
1485	 41.97	+1	1539918..1540751	+	277	22537670	-	SAG1527	-	IS861, transposase OrfB
1486	 34.85	0	1540800..1542515	-	571	22537671	-	SAG1528	-	chorismate binding enzyme
1487	 37.82	0	1542597..1545047	-	816	22537672	-	SAG1529	-	FtsK/SpoIIIE family protein
1488	 34.20	0	1545213..1546016	+	267	22537673	-	SAG1530	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
35.44	MEAN

3.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.