IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1366	 34.41	0	1411965..1412891	-	308	22537551	-	SAG1404	-	cell wall surface anchor family protein
1367	 31.53	-1	1412888..1413772	-	294	22537552	-	SAG1405	-	sortase family protein
1368	 32.43	0	1413772..1414653	-	293	22537553	-	SAG1406	-	sortase family protein
1369	 37.02	0	1414765..1416882	-	705	22537554	-	SAG1407	-	cell wall surface anchor family protein
1370	 32.37	0	1417012..1419717	-	901	22537555	-	SAG1408	-	cell wall surface anchor family protein
1371	 33.95	0	1421579..1422718	-	379	22537556	-	SAG1410	-	glycosyl transferase, group 1 family protein
1372	 32.63	0	1422708..1423556	-	282	22537557	-	SAG1411	-	glycosyl transferase, group 2 family protein
1373	 33.82	0	1423553..1424977	-	474	22537558	-	SAG1412	-	polysaccharide biosynthesis protein
1374	 33.55	0	1424977..1426341	-	454	22537559	-	SAG1413	-	hypothetical protein
1375	 32.79	0	1426343..1427269	-	308	22537560	-	SAG1414	-	glycosyl transferase, group 2 family protein
1376	 34.19	0	1427299..1428234	-	311	22537561	-	SAG1415	-	glycosyl transferase, group 2 family protein
1377	 33.43	0	1428236..1429294	-	352	22537562	-	SAG1416	-	nucleotide sugar dehydratase, putative
1378	 36.51	0	1429294..1430016	-	240	22537563	-	SAG1417	-	nucleotidyl transferase, putative
1379	 35.88	0	1430016..1430840	-	274	22537564	-	SAG1418	-	polysaccharide biosynthesis protein, putative
1380	 29.99	-1	1430865..1432598	-	577	22537565	-	SAG1419	-	hypothetical protein
1381	 30.79	-1	1432591..1432944	-	117	22537566	-	SAG1420	-	hypothetical protein
1382	 36.20	0	1432941..1433672	-	243	22537567	-	SAG1421	-	glycosyl transferase, group 2 family protein
1383	 32.80	0	1433674..1434615	-	313	22537568	-	SAG1422	-	glycosyl transferase, group 2 family protein
1384	 34.63	0	1434605..1435759	-	384	22537569	-	SAG1423	-	glycosyl transferase, putative
1385	 38.48	0	1435876..1436730	-	284	22537570	rfbD	SAG1424	-	dTDP-4-dehydrorhamnose reductase
1386	 38.01	0	1436820..1437161	-	113	22537571	-	SAG1425	-	hypothetical protein
1387	 38.20	0	1437270..1438379	-	369	22537572	rpoD	SAG1426	-	RNA polymerase sigma factor RpoD
1388	 34.60	0	1438387..1440195	-	602	22537573	dnaG	SAG1427	-	DNA primase
1389	 34.39	0	1440385..1440762	+	125	22537574	mscL	SAG1428	-	large conductance mechanosensitive channel protein
1390	 36.72	0	1440859..1441035	-	58	22537575	rpsU	SAG1429	-	30S ribosomal protein S21
1391	 32.14	0	1441139..1441642	-	167	22537576	-	SAG1430	-	hypothetical protein
1392	 35.94	0	1441725..1442531	-	268	22537577	-	SAG1431	-	amino acid ABC transporter, amino acid-binding protein
1393	 35.82	0	1442856..1443899	-	347	22537578	-	SAG1432	-	ammonium transporter family protein
1394	 35.11	0	1443979..1445106	+	375	22537579	-	SAG1433	-	hypothetical protein
1395	 37.59	0	1445143..1446129	-	328	22537580	-	SAG1434	-	hypothetical protein
1396	 32.68	0	1446292..1446597	+	101	22537581	-	SAG1435	-	hypothetical protein
1397	 37.12	0	1446755..1448128	-	457	22537582	-	SAG1436	-	glycerol-3-phosphate transporter, putative
1398	 20.83	-2	1448236..1448403	+	55	22537583	-	SAG1437	-	hypothetical protein
1399	 32.80	0	1448544..1450808	-	754	22537584	glgP	SAG1438	-	glycogen phosphorylase
1400	 37.01	0	1450820..1452316	-	498	22537585	malQ	SAG1439	-	4-alpha-glucanotransferase
1401	 33.82	0	1452437..1453465	-	342	22537586	-	SAG1440	-	maltose operon repressor MalR, putative
1402	 36.94	0	1453721..1454968	+	415	22537587	-	SAG1441	-	maltose/maltodextrin ABC transporter, maltose/maltodextrin-binding protein
1403	 35.38	0	1455066..1456436	+	456	22537588	-	SAG1442	-	maltose ABC transporter, permease protein
1404	 35.96	0	1456436..1457272	+	278	22537589	-	SAG1443	-	maltose ABC transporter, permease protein
1405	 36.59	0	1457503..1458975	+	490	22537590	-	SAG1444	-	proton/peptide symporter family protein
1406	 27.51	-2	1459557..1459745	-	62	22537591	-	SAG1446	-	hypothetical protein
1407	 31.75	0	1459756..1461081	-	441	22537592	-	SAG1447	-	hypothetical protein
1408	 33.80	0	1461074..1462582	-	502	22537593	-	SAG1448	-	glycosyl transferase, group 1 family protein
1409	 36.47	0	1462596..1464983	-	795	22537594	-	SAG1449	-	preprotein translocase subunit SecA
1410	 31.72	0	1464970..1465962	-	330	22537595	-	SAG1450	-	hypothetical protein
1411	 34.81	0	1465959..1467443	-	494	22537596	-	SAG1451	-	hypothetical protein
1412	 31.91	0	1467525..1469069	-	514	22537597	-	SAG1452	-	hypothetical protein
1413	 32.60	0	1469069..1470298	-	409	22537598	secY	SAG1453	-	preprotein translocase subunit SecY
1414	 32.66	0	1470422..1471618	-	398	22537599	-	SAG1454	-	hypothetical protein
1415	 32.66	0	1471679..1472566	-	295	22537600	-	SAG1455	-	glycosyl transferase, group 2 family protein
1416	 38.46	0	1473647..1474036	-	129	22537601	-	SAG1457	-	IS1381 transposase protein B
1417	 39.06	0	1474069..1474452	-	127	22537602	-	SAG1458	-	IS1381 transposase protein A
1418	 31.16	-1	1474581..1475822	-	413	22537603	-	SAG1459	-	glycosyl transferase family protein
1419	 32.01	0	1475819..1477024	-	401	22537604	-	SAG1460	-	glycosyl transferase family protein
1420	 36.81	0	1477033..1478040	-	335	22537605	-	SAG1461	-	hypothetical protein
1421	 41.26	+1	1478371..1481283	-	970	22537606	-	SAG1462	-	cell wall surface anchor family protein
1422	 37.15	0	1483259..1485250	-	663	22537607	uvrB	SAG1464	-	excinuclease ABC subunit B
1423	 34.85	0	1485311..1486231	-	306	22537608	-	SAG1465	-	protease, putative
1424	 36.72	0	1486414..1488597	+	727	22537609	glnP	SAG1466	-	glutamine ABC transporter, glutamine-binding protein/permease protein
1425	 37.11	0	1488597..1489337	+	246	22537610	-	SAG1467	-	glutamine ABC transporter, ATP-binding protein, GlnQ putative
1426	 25.36	-2	1489486..1489836	+	116	22537611	-	SAG1468	-	hypothetical protein
1427	 34.59	0	1489928..1490086	-	52	22537612	-	SAG1469	-	hypothetical protein
1428	 41.28	+1	1490112..1491419	-	435	161485613	obgE	SAG1470	-	GTPase ObgE
1429	 34.88	0	1491486..1491614	-	42	22537614	-	SAG1471	-	hypothetical protein
1430	 38.65	0	1491811..1493052	+	413	22537615	pepS	SAG1472	-	aminopeptidase PepS
1431	 35.92	0	1493086..1493664	-	192	22537616	-	SAG1473	-	cell wall surface anchor family protein
1432	 36.22	0	1493774..1495816	-	680	22537617	-	SAG1474	-	amidase family protein
1433	 33.47	0	1495901..1496623	-	240	22537618	rsuA	SAG1475	-	ribosomal small subunit pseudouridine synthase A
1434	 34.99	0	1496814..1497656	-	280	22537619	-	SAG1476	-	aldo/keto reductase family oxidoreductase
1435	 37.19	0	1497923..1498597	+	224	22537620	-	SAG1477	-	nitroreductase family protein
1436	 35.37	0	1498685..1499077	+	130	22537621	gloA	SAG1478	-	lactoylglutathione lyase
1437	 36.14	0	1499206..1500132	+	308	22537622	-	SAG1479	-	glycosyl transferase, group 2 family protein
1438	 37.37	0	1500261..1501649	+	462	22537623	-	SAG1480	-	amino acid permease
1439	 35.47	0	1501733..1502200	-	155	22537624	smpB	SAG1481	-	SsrA-binding protein
1440	 37.70	0	1502203..1504608	-	801	22537625	vacB	SAG1482	-	VacB/Rnb family exoribonuclease
1441	 32.07	0	1504721..1504957	-	78	22537626	secG	SAG1483	-	preprotein translocase subunit SecG
1442	 30.61	-1	1505004..1505150	-	48	22537627	rpmG	SAG1484	-	50S ribosomal protein L33
1443	 37.09	0	1505147..1506316	-	389	22537628	-	SAG1485	-	multi-drug resistance protein
1444	 30.30	-1	1506512..1508158	-	548	22537629	-	SAG1486	-	hypothetical protein
1445	 34.05	0	1508148..1508849	-	233	22537630	-	SAG1487	-	ABC transporter, ATP binding protein
1446	 34.52	0	1508973..1509560	-	195	22537631	coaE	SAG1488	-	dephospho-CoA kinase
1447	 36.50	0	1509557..1510378	-	273	22537632	mutM	SAG1489	-	formamidopyrimidine-DNA glycosylase
1448	 29.68	-1	1510527..1511375	-	282	22537633	-	SAG1490	-	MutR family transcriptional regulator
1449	 34.97	0	1511592..1513184	+	530	22537634	-	SAG1491	-	hypothetical protein
1450	 37.85	0	1513220..1513396	+	58	22537635	-	SAG1492	-	hypothetical protein
1451	 31.84	0	1513447..1513647	-	66	22537636	-	SAG1493	-	hypothetical protein
1452	 30.30	-1	1513840..1513938	-	32	22537637	-	SAG1494	-	hypothetical protein
1453	 34.96	0	1514173..1514418	-	81	22537638	-	SAG1495	-	CAAX amino terminal protease family protein
1454	 35.74	0	1514446..1514778	-	110	22537639	-	SAG1496	-	hypothetical protein
1455	 28.07	-1	1514880..1514993	-	37	22537640	-	SAG1497	-	hypothetical protein
1456	 26.87	-2	1515157..1515558	-	133	22537641	-	SAG1498	-	hypothetical protein
1457	 36.33	0	1515795..1516694	-	299	22537642	era	SAG1499	-	GTP-binding protein Era
1458	 32.58	0	1516736..1517134	-	132	22537643	dgkA	SAG1500	-	diacylglycerol kinase
1459	 33.95	0	1517115..1517600	-	161	22537644	-	SAG1501	-	putative metalloprotease
1460	 32.47	0	1518007..1518813	-	268	22537645	-	SAG1502	-	tetracenomycin polyketide synthesis O-methyltransferase TcmP, putative
1461	 30.00	-1	1518858..1518977	-	39	22537646	-	SAG1503	-	hypothetical protein
1462	 26.50	-2	1519014..1519130	-	38	22537647	-	SAG1504	-	hypothetical protein
1463	 33.33	0	1519135..1519611	-	158	22537648	-	SAG1505	-	MutT/nudix family protein
1464	 34.20	0	1519803..1520606	+	267	22537649	-	SAG1506	-	hypothetical protein
1465	 36.51	0	1520697..1521734	-	345	22537650	-	SAG1507	-	PhoH family protein
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.