IslandPathversion 1.0

IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.44 STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1304	 35.34	0	1352818..1353666	-	282	22537489	-	SAG1342	-	DegV family protein
1305	 36.22	0	1353666..1354046	-	126	22537490	-	SAG1343	-	hypothetical protein
1306	 32.21	0	1354118..1354651	-	177	22537491	-	SAG1344	-	hypothetical protein
1307	 28.08	-1	1354702..1355196	-	164	22537492	-	SAG1345	-	hypothetical protein
1308	 38.58	0	1355385..1357349	-	654	22537493	-	SAG1346	-	PTS system, fructose specific IIABC components
1309	 36.62	0	1357346..1358257	-	303	22537494	fruK	SAG1347	-	1-phosphofructokinase
1310	 33.33	0	1358254..1358997	-	247	22537495	lacR-1	SAG1348	-	lactose phosphotransferase system repressor
1311	 32.77	0	1359128..1360363	-	411	22537496	-	SAG1349	-	beta-lactam resistance factor
1312	 34.74	0	1360507..1362141	-	544	22537497	-	SAG1350	-	surface antigen-related protein
1313	 35.28	0	1362353..1363276	-	307	22537498	-	SAG1351	-	2-dehydropantoate 2-reductase
1314	 39.12	0	1363289..1364359	-	356	22537499	-	SAG1352	-	hypothetical protein
1315	 35.45	0	1364496..1365488	-	330	22537500	-	SAG1353	-	pyridine nucleotide-disulphide oxidoreductase family protein
1316	 36.38	0	1365469..1366224	-	251	22537501	trmD	SAG1354	-	tRNA (guanine-N(1)-)-methyltransferase
1317	 34.49	0	1366211..1366729	-	172	22537502	rimM	SAG1355	-	16S rRNA-processing protein
1318	 29.37	-1	1367051..1368562	-	503	22537503	-	SAG1356	-	RofA family transcriptional regulator
1319	 36.63	0	1368694..1368936	-	80	22537504	-	SAG1357	-	KH domain-containing protein
1320	 37.36	0	1368946..1369218	-	90	22537505	rpsP	SAG1358	-	30S ribosomal protein S16
1321	 36.38	0	1369347..1370594	-	415	22537506	-	SAG1359	-	permease, putative
1322	 36.01	0	1370609..1371319	-	236	22537507	-	SAG1360	-	ABC transporter, ATP-binding protein
1323	 35.02	0	1371322..1372566	-	414	22537508	-	SAG1361	-	hypothetical protein
1324	 32.15	0	1372768..1374366	-	532	22537509	-	SAG1362	-	carbamoyl-phosphate synthase, large subunit, putative
1325	 37.63	0	1374422..1375492	-	356	22537510	carA-2	SAG1363	-	carbamoyl phosphate synthase small subunit
1326	 35.25	0	1375541..1376062	-	173	22537511	pyrR	SAG1364	-	pyrimidine regulatory protein PyrR
1327	 38.38	0	1376238..1377128	-	296	22537512	-	SAG1365	-	ribosomal large subunit pseudouridine synthase D
1328	 28.17	-1	1377112..1377576	-	154	22537513	lspA	SAG1366	-	lipoprotein signal peptidase
1329	 34.88	0	1377585..1378490	-	301	22537514	-	SAG1367	-	LysR family transcriptional regulator
1330	 43.51	+2	1378706..1378990	-	94	22537515	rpmA	SAG1368	-	50S ribosomal protein L27
1331	 34.22	0	1379021..1379359	-	112	22537516	-	SAG1369	-	hypothetical protein
1332	 37.46	0	1379366..1379680	-	104	22537517	rplU	SAG1370	-	50S ribosomal protein L21
1333	 34.27	0	1379870..1381048	-	392	22537518	-	SAG1371	-	hypothetical protein
1334	 36.87	0	1381150..1382364	-	404	22537519	thiI	SAG1372	-	thiamine biosynthesis protein ThiI
1335	 35.78	0	1382366..1383511	-	381	22537520	iscS-2	SAG1373	-	cysteine desulphurase
1336	 33.55	0	1383758..1384210	+	150	22537521	-	SAG1374	-	hypothetical protein
1337	 39.19	0	1384253..1385602	-	449	22537522	gor	SAG1375	-	glutathione reductase
1338	 36.61	0	1385777..1386112	-	111	22537523	-	SAG1376	-	hypothetical protein
1339	 40.45	+1	1386196..1387362	-	388	22537524	aroC	SAG1377	-	chorismate synthase
1340	 37.17	0	1387363..1388430	-	355	22537525	aroB	SAG1378	-	3-dehydroquinate synthase
1341	 35.40	0	1388524..1389201	-	225	22537526	aroD	SAG1379	-	3-dehydroquinate dehydratase
1342	 32.47	0	1389201..1390358	-	385	22537527	-	SAG1380	-	hypothetical protein
1343	 34.55	0	1390493..1392637	+	714	22537528	-	SAG1381	-	sulfatase
1344	 38.89	0	1392879..1393238	-	119	22537529	rplT	SAG1382	-	50S ribosomal protein L20
1345	 41.29	+1	1393296..1393496	-	66	22537530	rpmI	SAG1383	-	50S ribosomal protein L35
1346	 36.72	0	1393536..1394066	-	176	22537531	infC	SAG1384	-	translation initiation factor IF-3
1347	 37.13	0	1394227..1394910	-	227	22537532	cmk	SAG1385	-	cytidylate kinase
1348	 37.52	0	1394921..1395445	-	174	22537533	-	SAG1386	-	hypothetical protein
1349	 32.83	0	1395491..1395688	+	65	22537534	-	SAG1387	-	ferredoxin, 4Fe-4S
1350	 31.10	-1	1395675..1396166	-	163	22537535	-	SAG1388	-	hypothetical protein
1351	 35.38	0	1396195..1397415	-	406	22537536	pepT	SAG1389	-	peptidase T
1352	 36.15	0	1397550..1399184	-	544	22537537	-	SAG1390	-	polysaccharide biosynthesis protein, putative
1353	 35.60	0	1399308..1400762	+	484	22537538	murE	SAG1391	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1354	 35.09	0	1400918..1401712	+	264	22537539	-	SAG1392	-	iron compound ABC transporter, ATP-binding protein
1355	 32.26	0	1401736..1402668	+	310	22537540	-	SAG1393	-	iron compound ABC transporter, substrate-binding protein
1356	 35.87	0	1402684..1403709	+	341	22537541	-	SAG1394	-	iron compound ABC transporter, permease protein
1357	 34.93	0	1403706..1404707	+	333	22537542	-	SAG1395	-	iron compound ABC transporter, permease protein
1358	 29.36	-1	1404736..1405389	-	217	22537543	-	SAG1396	-	hypothetical protein
1359	 36.75	0	1405449..1406384	-	311	22537544	ppa	SAG1397	-	putative manganese-dependent inorganic pyrophosphatase
1360	 35.74	0	1406501..1407289	-	262	22537545	pflA-2	SAG1398	-	pyruvate formate-lyase-activating enzyme
1361	 36.18	0	1407357..1408691	-	444	22537546	-	SAG1399	-	CBS domain-containing protein
1362	 34.57	0	1408871..1409437	-	188	22537547	-	SAG1400	-	hypothetical protein
1363	 36.32	0	1409430..1410365	-	311	22537548	-	SAG1401	-	hypothetical protein
1364	 33.64	0	1410458..1411099	-	213	22537549	-	SAG1402	-	PAP2 family protein
1365	 31.45	-1	1411080..1411664	-	194	22537550	-	SAG1403	-	hypothetical protein
1366	 34.41	0	1411965..1412891	-	308	22537551	-	SAG1404	-	cell wall surface anchor family protein
1367	 31.53	-1	1412888..1413772	-	294	22537552	-	SAG1405	-	sortase family protein
1368	 32.43	0	1413772..1414653	-	293	22537553	-	SAG1406	-	sortase family protein
1369	 37.02	0	1414765..1416882	-	705	22537554	-	SAG1407	-	cell wall surface anchor family protein
1370	 32.37	0	1417012..1419717	-	901	22537555	-	SAG1408	-	cell wall surface anchor family protein
1371	 33.95	0	1421579..1422718	-	379	22537556	-	SAG1410	-	glycosyl transferase, group 1 family protein
1372	 32.63	0	1422708..1423556	-	282	22537557	-	SAG1411	-	glycosyl transferase, group 2 family protein
1373	 33.82	0	1423553..1424977	-	474	22537558	-	SAG1412	-	polysaccharide biosynthesis protein
1374	 33.55	0	1424977..1426341	-	454	22537559	-	SAG1413	-	hypothetical protein
1375	 32.79	0	1426343..1427269	-	308	22537560	-	SAG1414	-	glycosyl transferase, group 2 family protein
1376	 34.19	0	1427299..1428234	-	311	22537561	-	SAG1415	-	glycosyl transferase, group 2 family protein
1377	 33.43	0	1428236..1429294	-	352	22537562	-	SAG1416	-	nucleotide sugar dehydratase, putative
1378	 36.51	0	1429294..1430016	-	240	22537563	-	SAG1417	-	nucleotidyl transferase, putative
1379	 35.88	0	1430016..1430840	-	274	22537564	-	SAG1418	-	polysaccharide biosynthesis protein, putative
1380	 29.99	-1	1430865..1432598	-	577	22537565	-	SAG1419	-	hypothetical protein
1381	 30.79	-1	1432591..1432944	-	117	22537566	-	SAG1420	-	hypothetical protein
1382	 36.20	0	1432941..1433672	-	243	22537567	-	SAG1421	-	glycosyl transferase, group 2 family protein
1383	 32.80	0	1433674..1434615	-	313	22537568	-	SAG1422	-	glycosyl transferase, group 2 family protein
1384	 34.63	0	1434605..1435759	-	384	22537569	-	SAG1423	-	glycosyl transferase, putative
1385	 38.48	0	1435876..1436730	-	284	22537570	rfbD	SAG1424	-	dTDP-4-dehydrorhamnose reductase
1386	 38.01	0	1436820..1437161	-	113	22537571	-	SAG1425	-	hypothetical protein
1387	 38.20	0	1437270..1438379	-	369	22537572	rpoD	SAG1426	-	RNA polymerase sigma factor RpoD
1388	 34.60	0	1438387..1440195	-	602	22537573	dnaG	SAG1427	-	DNA primase
1389	 34.39	0	1440385..1440762	+	125	22537574	mscL	SAG1428	-	large conductance mechanosensitive channel protein
1390	 36.72	0	1440859..1441035	-	58	22537575	rpsU	SAG1429	-	30S ribosomal protein S21
1391	 32.14	0	1441139..1441642	-	167	22537576	-	SAG1430	-	hypothetical protein
1392	 35.94	0	1441725..1442531	-	268	22537577	-	SAG1431	-	amino acid ABC transporter, amino acid-binding protein
1393	 35.82	0	1442856..1443899	-	347	22537578	-	SAG1432	-	ammonium transporter family protein
1394	 35.11	0	1443979..1445106	+	375	22537579	-	SAG1433	-	hypothetical protein
1395	 37.59	0	1445143..1446129	-	328	22537580	-	SAG1434	-	hypothetical protein
1396	 32.68	0	1446292..1446597	+	101	22537581	-	SAG1435	-	hypothetical protein
1397	 37.12	0	1446755..1448128	-	457	22537582	-	SAG1436	-	glycerol-3-phosphate transporter, putative
1398	 20.83	-2	1448236..1448403	+	55	22537583	-	SAG1437	-	hypothetical protein
1399	 32.80	0	1448544..1450808	-	754	22537584	glgP	SAG1438	-	glycogen phosphorylase
1400	 37.01	0	1450820..1452316	-	498	22537585	malQ	SAG1439	-	4-alpha-glucanotransferase
1401	 33.82	0	1452437..1453465	-	342	22537586	-	SAG1440	-	maltose operon repressor MalR, putative
1402	 36.94	0	1453721..1454968	+	415	22537587	-	SAG1441	-	maltose/maltodextrin ABC transporter, maltose/maltodextrin-binding protein
1403	 35.38	0	1455066..1456436	+	456	22537588	-	SAG1442	-	maltose ABC transporter, permease protein
35.44	MEAN

3.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.