IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1235	 36.18	0	1279548..1279898	+	116	22537420	-	SAG1271	-	hypothetical protein
1236	 31.72	0	1279885..1280193	+	102	22537421	-	SAG1272	-	hypothetical protein
1237	 34.73	0	1280202..1280558	-	118	22537422	-	SAG1273	-	hypothetical protein
1238	 36.15	0	1280548..1280937	-	129	22537423	-	SAG1274	-	hypothetical protein
1239	 39.91	+1	1280934..1281161	-	75	22537424	-	SAG1275	-	hypothetical protein
1240	 38.07	0	1281215..1282291	-	358	22537425	-	SAG1276	-	hypothetical protein
1241	 41.06	+1	1282330..1282821	-	163	22537426	-	SAG1277	-	hypothetical protein
1242	 32.65	0	1283064..1283354	-	96	22537427	-	SAG1278	-	hypothetical protein
1243	 39.00	0	1283368..1283667	-	99	22537428	-	SAG1279	-	hypothetical protein
1244	 41.10	+1	1283738..1290562	-	2274	22537429	-	SAG1280	-	SNF2 family protein
1245	 38.04	0	1290611..1291162	-	183	22537430	-	SAG1281	-	hypothetical protein
1246	 42.71	+1	1291146..1291337	-	63	22537431	-	SAG1282	-	calcium-binding protein, putative
1247	 41.71	+1	1291338..1296233	-	1631	22537432	ssp-5	SAG1283	-	agglutinin receptor
1248	 33.67	0	1296512..1297102	+	196	22537433	abiGI	SAG1284	-	abortive infection protein AbiGI
1249	 31.80	0	1297099..1297944	+	281	22537434	abiGII	SAG1285	-	abortive infection protein AbiGII
1250	 41.68	+1	1298030..1300831	-	933	22537435	-	SAG1286	-	Tn5252, Orf28
1251	 40.58	+1	1300833..1303163	-	776	22537436	-	SAG1287	-	Tn5252, Orf26
1252	 41.87	+1	1303556..1304410	-	284	22537437	-	SAG1289	-	Tn5252, Orf23
1253	 45.27	+2	1304429..1304671	-	80	22537438	-	SAG1290	-	hypothetical protein
1254	 39.26	+1	1306506..1306994	-	162	22537439	-	SAG1292	-	hypothetical protein
1255	 39.15	0	1307071..1307655	-	194	22537440	-	SAG1293	-	protease, putative
1256	 35.04	0	1307658..1307891	-	77	22537441	-	SAG1294	-	hypothetical protein
1257	 40.62	+1	1307900..1308283	-	127	22537442	-	SAG1295	-	hypothetical protein
1258	 38.46	0	1308294..1308722	-	142	22537443	-	SAG1296	-	hypothetical protein
1259	 44.40	+2	1308706..1310061	-	451	22537444	-	SAG1297	-	C-5 cytosine-specific DNA methylase
1260	 33.33	0	1310113..1310208	-	31	22537445	-	SAG1298	-	hypothetical protein
1261	 40.42	+1	1310210..1311028	-	272	22537446	-	SAG1299	-	hypothetical protein
1262	 37.93	0	1311025..1311198	-	57	22537447	-	SAG1300	-	hypothetical protein
1263	 39.34	+1	1311397..1311762	-	121	22537448	rplL	SAG1301	-	50S ribosomal protein L7/L12
1264	 38.32	0	1311826..1312326	-	166	22537449	rplJ	SAG1302	-	50S ribosomal protein L10
1265	 38.17	0	1312759..1314867	+	702	22537450	-	SAG1303	-	ATP-dependent Clp protease, ATP-binding subunit
1266	 35.35	0	1314851..1314949	-	32	22537451	-	SAG1304	-	hypothetical protein
1267	 44.44	+2	1314960..1315904	-	314	22537452	mmuM	SAG1305	-	homocysteine methyltransferase
1268	 43.72	+2	1315909..1317285	-	458	22537453	-	SAG1306	-	amino acid permease
1269	 35.48	0	1317415..1318065	-	216	22537454	-	SAG1307	-	hypothetical protein
1270	 36.11	0	1318223..1318726	-	167	22537455	-	SAG1308	-	hypothetical protein
1271	 32.26	0	1318723..1318815	-	30	22537456	-	SAG1309	-	hypothetical protein
1272	 35.15	0	1318818..1319366	+	182	22537457	-	SAG1310	-	TetR family transcriptional regulator
1273	 38.53	0	1319428..1320024	-	198	22537458	-	SAG1311	-	GTPase EngB
1274	 38.63	0	1320035..1321261	-	408	22537459	clpX	SAG1312	-	ATP-dependent protease ATP-binding subunit
1275	 33.33	0	1321291..1321461	-	56	22537460	-	SAG1313	-	hypothetical protein
1276	 35.15	0	1321479..1321973	-	164	22537461	folA	SAG1314	-	dihydrofolate reductase
1277	 34.64	0	1322053..1322892	-	279	22537462	thyA	SAG1315	-	thymidylate synthase
1278	 35.04	0	1323046..1324218	+	390	22537463	-	SAG1316	-	HMG-CoA synthase
1279	 38.32	0	1324220..1325503	+	427	22537464	-	SAG1317	-	3-hydroxy-3-methylglutaryl-CoA reductase
1280	 31.56	-1	1325595..1326044	+	149	22537465	-	SAG1318	-	hypothetical protein
1281	 36.28	0	1326049..1326693	+	214	22537466	-	SAG1319	-	hemolysin III, putative
1282	 37.16	0	1326780..1327694	+	304	22537467	-	SAG1320	-	hypothetical protein
1283	 36.37	0	1327795..1328649	+	284	22537468	-	SAG1321	-	hypothetical protein
1284	 31.51	-1	1328695..1328913	-	72	22537469	-	SAG1322	-	hypothetical protein
1285	 37.05	0	1328981..1329976	-	331	22537470	-	SAG1323	-	isopentenyl pyrophosphate isomerase
1286	 35.45	0	1329973..1330965	-	330	22537471	-	SAG1324	-	phosphomevalonate kinase
1287	 37.04	0	1330958..1331902	-	314	22537472	mvaD	SAG1325	-	diphosphomevalonate decarboxylase
1288	 37.43	0	1331884..1332762	-	292	22537473	-	SAG1326	-	mevalonate kinase, putative
1289	 33.58	0	1332878..1334107	-	409	22537474	-	SAG1327	-	sensor histidine kinase
1290	 36.97	0	1334107..1334793	-	228	22537475	-	SAG1328	-	DNA-binding response regulator
1291	 34.77	0	1334795..1335421	-	208	22537476	-	SAG1329	-	GTP pyrophosphokinase family protein
1292	 24.15	-2	1335570..1335776	-	68	22537477	-	SAG1330	-	hypothetical protein
1293	 37.21	0	1336428..1339367	-	979	22537478	-	SAG1331	-	R5 protein
1294	 31.29	-1	1340126..1340566	-	146	22537479	-	SAG1332	-	MarR family transcriptional regulator
1295	 36.37	0	1340840..1342912	+	690	22537480	-	SAG1333	-	5'-nucleotidase family protein
1296	 34.55	0	1342949..1343359	-	136	22537481	-	SAG1334	-	peptide deformylase
1297	 39.41	+1	1343429..1344778	-	449	22537482	gdhA	SAG1335	-	glutamate dehydrogenase
1298	 35.49	0	1344946..1345455	+	169	22537483	-	SAG1336	-	hypothetical protein
1299	 35.48	0	1345496..1347265	-	589	22537484	-	SAG1337	-	ABC transporter, ATP-binding/permease protein
1300	 36.90	0	1347270..1349009	-	579	22537485	-	SAG1338	-	ABC transporter, ATP-binding/permease protein
1301	 38.19	0	1349076..1349549	-	157	22537486	-	SAG1339	-	acetyltransferase
1302	 33.76	0	1349546..1351414	-	622	22537487	-	SAG1340	-	ABC transporter, ATP-binding protein
1303	 34.99	0	1351425..1352633	-	402	22537488	-	SAG1341	-	tRNA CCA-pyrophosphorylase
1304	 35.34	0	1352818..1353666	-	282	22537489	-	SAG1342	-	DegV family protein
1305	 36.22	0	1353666..1354046	-	126	22537490	-	SAG1343	-	hypothetical protein
1306	 32.21	0	1354118..1354651	-	177	22537491	-	SAG1344	-	hypothetical protein
1307	 28.08	-1	1354702..1355196	-	164	22537492	-	SAG1345	-	hypothetical protein
1308	 38.58	0	1355385..1357349	-	654	22537493	-	SAG1346	-	PTS system, fructose specific IIABC components
1309	 36.62	0	1357346..1358257	-	303	22537494	fruK	SAG1347	-	1-phosphofructokinase
1310	 33.33	0	1358254..1358997	-	247	22537495	lacR-1	SAG1348	-	lactose phosphotransferase system repressor
1311	 32.77	0	1359128..1360363	-	411	22537496	-	SAG1349	-	beta-lactam resistance factor
1312	 34.74	0	1360507..1362141	-	544	22537497	-	SAG1350	-	surface antigen-related protein
1313	 35.28	0	1362353..1363276	-	307	22537498	-	SAG1351	-	2-dehydropantoate 2-reductase
1314	 39.12	0	1363289..1364359	-	356	22537499	-	SAG1352	-	hypothetical protein
1315	 35.45	0	1364496..1365488	-	330	22537500	-	SAG1353	-	pyridine nucleotide-disulphide oxidoreductase family protein
1316	 36.38	0	1365469..1366224	-	251	22537501	trmD	SAG1354	-	tRNA (guanine-N(1)-)-methyltransferase
1317	 34.49	0	1366211..1366729	-	172	22537502	rimM	SAG1355	-	16S rRNA-processing protein
1318	 29.37	-1	1367051..1368562	-	503	22537503	-	SAG1356	-	RofA family transcriptional regulator
1319	 36.63	0	1368694..1368936	-	80	22537504	-	SAG1357	-	KH domain-containing protein
1320	 37.36	0	1368946..1369218	-	90	22537505	rpsP	SAG1358	-	30S ribosomal protein S16
1321	 36.38	0	1369347..1370594	-	415	22537506	-	SAG1359	-	permease, putative
1322	 36.01	0	1370609..1371319	-	236	22537507	-	SAG1360	-	ABC transporter, ATP-binding protein
1323	 35.02	0	1371322..1372566	-	414	22537508	-	SAG1361	-	hypothetical protein
1324	 32.15	0	1372768..1374366	-	532	22537509	-	SAG1362	-	carbamoyl-phosphate synthase, large subunit, putative
1325	 37.63	0	1374422..1375492	-	356	22537510	carA-2	SAG1363	-	carbamoyl phosphate synthase small subunit
1326	 35.25	0	1375541..1376062	-	173	22537511	pyrR	SAG1364	-	pyrimidine regulatory protein PyrR
1327	 38.38	0	1376238..1377128	-	296	22537512	-	SAG1365	-	ribosomal large subunit pseudouridine synthase D
1328	 28.17	-1	1377112..1377576	-	154	22537513	lspA	SAG1366	-	lipoprotein signal peptidase
1329	 34.88	0	1377585..1378490	-	301	22537514	-	SAG1367	-	LysR family transcriptional regulator
1330	 43.51	+2	1378706..1378990	-	94	22537515	rpmA	SAG1368	-	50S ribosomal protein L27
1331	 34.22	0	1379021..1379359	-	112	22537516	-	SAG1369	-	hypothetical protein
1332	 37.46	0	1379366..1379680	-	104	22537517	rplU	SAG1370	-	50S ribosomal protein L21
1333	 34.27	0	1379870..1381048	-	392	22537518	-	SAG1371	-	hypothetical protein
1334	 36.87	0	1381150..1382364	-	404	22537519	thiI	SAG1372	-	thiamine biosynthesis protein ThiI
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.