IslandPathversion 1.0

IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.44 STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1162	 35.72	0	1192251..1193255	-	334	22537347	-	SAG1189	-	hypothetical protein
1163	 36.29	0	1193614..1195269	+	551	22537348	pavA	SAG1190	-	adherence and virulence protein A
1164	 36.39	0	1195323..1196042	-	239	22537349	budA	SAG1191	-	alpha-acetolactate decarboxylase
1165	 40.76	+1	1196056..1197738	-	560	22537350	ilvK	SAG1192	-	acetolactate synthase
1166	 33.90	0	1197848..1199074	-	408	22537351	-	SAG1193	-	TPR domain-containing protein
1167	 33.92	0	1199064..1200254	-	396	22537352	-	SAG1194	-	hypothetical protein
1168	 34.42	0	1200346..1200807	-	153	22537353	-	SAG1195	-	MutT/nudix family protein
1169	 34.37	0	1200797..1201279	-	160	22537354	mutX	SAG1196	-	mutator MutT protein
1170	 35.82	0	1201497..1204715	+	1072	22537355	-	SAG1197	-	hyaluronate lyase
1171	 41.36	+1	1204767..1205813	-	348	22537356	rfbB	SAG1198	-	dTDP-glucose 4,6-dehydratase
1172	 38.89	0	1206020..1206613	-	197	22537357	-	SAG1199	-	dTDP-4-keto-6-deoxyglucose-3,5-epimerase
1173	 39.08	0	1206613..1207482	-	289	22537358	rfbA	SAG1200	-	glucose-1-phosphate thymidylyltransferase
1174	 37.05	0	1207541..1208644	-	367	22537359	-	SAG1201	-	iminodiacetate oxidase, putative
1175	 34.35	0	1208653..1209441	-	262	22537360	-	SAG1202	-	hypothetical protein
1176	 33.77	0	1209431..1210114	-	227	22537361	-	SAG1203	-	hypothetical protein
1177	 34.21	0	1210218..1210898	-	226	22537362	-	SAG1204	-	DNA replication protein DnaD, putative
1178	 38.15	0	1211016..1211534	-	172	22537363	apt	SAG1205	-	adenine phosphoribosyltransferase
1179	 37.12	0	1211657..1214221	-	854	22537364	-	SAG1206	-	hypothetical protein
1180	 21.21	-2	1214205..1214303	-	32	22537365	-	SAG1207	-	hypothetical protein
1181	 35.15	0	1214373..1216571	-	732	22537366	recJ	SAG1208	-	single-stranded-DNA-specific exonuclease RecJ
1182	 33.46	0	1216568..1217329	-	253	22537367	-	SAG1209	-	short chain dehydrogenase/reductase family oxidoreductase
1183	 36.45	0	1217331..1218260	-	309	22537368	-	SAG1210	-	ribonuclease Z
1184	 31.94	0	1218302..1218949	-	215	22537369	-	SAG1211	-	hypothetical protein
1185	 35.03	0	1218942..1220180	-	412	22537370	hflX	SAG1212	-	GTP-binding protein HflX
1186	 34.79	0	1220271..1221161	-	296	22537371	miaA	SAG1213	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1187	 36.16	0	1221272..1221448	+	58	22537372	-	SAG1214	-	hypothetical protein
1188	 34.53	0	1221490..1222407	-	305	22537373	-	SAG1215	-	hypothetical protein
1189	 35.73	0	1222542..1226300	-	1252	22537374	-	SAG1216	-	pullulanase, putative
1190	 34.87	0	1227217..1227801	-	194	22537375	-	SAG1218	-	hypothetical protein
1191	 39.59	+1	1227898..1229304	-	468	22537376	-	SAG1219	-	dipeptidase PepV
1192	 33.67	0	1229351..1229953	-	200	22537377	-	SAG1220	-	nitroreductase family protein
1193	 34.57	0	1231946..1233727	-	593	22537378	uvrC	SAG1222	-	excinuclease ABC subunit C
1194	 35.16	0	1233886..1234653	+	255	22537379	-	SAG1223	-	hypothetical protein
1195	 34.68	0	1234712..1236052	-	446	22537380	-	SAG1224	-	MATE efflux family protein
1196	 35.77	0	1236152..1236562	-	136	22537381	-	SAG1225	-	hypothetical protein
1197	 35.34	0	1236572..1237069	-	165	22537382	-	SAG1226	-	hypothetical protein
1198	 30.65	-1	1237291..1237887	+	198	22537383	-	SAG1227	-	hypothetical protein
1199	 38.83	0	1238076..1238366	+	96	22537384	-	SAG1228	-	ISSdy1, transposase OrfA
1200	 41.41	+1	1238402..1239181	+	259	22537385	-	SAG1229	-	ISSdy1, transposase OrfB
1201	 36.43	0	1239405..1239695	+	96	22537386	-	SAG1230	-	hypothetical protein
1202	 40.02	+1	1241015..1243483	-	822	22537387	-	SAG1233	-	streptococcal histidine triad family protein
1203	 40.17	+1	1243496..1244416	-	306	22537388	lmb	SAG1234	-	laminin-binding surface protein
1204	 44.13	+2	1244650..1245927	-	425	22537389	-	SAG1235	-	GBSi1, group II intron, maturase
1205	 30.64	-1	1250615..1251949	-	444	22537390	-	SAG1237	-	hypothetical protein
1206	 30.54	-1	1252057..1252665	-	202	22537391	-	SAG1238	-	hypothetical protein
1207	 27.71	-2	1252715..1252945	-	76	22537392	-	SAG1239	-	hypothetical protein
1208	 35.51	0	1253409..1253684	+	91	22537393	-	SAG1241	-	IS3 family transposase OrfA
1209	 38.49	0	1254003..1254293	+	96	22537394	-	SAG1243	-	ISSdy1, transposase OrfA
1210	 41.28	+1	1254329..1255108	+	259	22537395	-	SAG1244	-	ISSdy1, transposase OrfB
1211	 29.06	-1	1255213..1255329	-	38	22537396	-	SAG1245	-	hypothetical protein
1212	 25.13	-2	1255316..1256485	+	389	22537397	-	SAG1246	-	hypothetical protein
1213	 32.25	0	1256680..1257879	-	399	22537398	-	SAG1247	-	phage integrase family site specific recombinase
1214	 34.65	0	1257902..1258129	-	75	22537399	-	SAG1248	-	hypothetical protein
1215	 33.78	0	1258408..1258632	-	74	22537400	-	SAG1249	-	Cro/CI family transcriptional regulator
1216	 32.10	0	1258813..1260678	-	621	22537401	-	SAG1250	-	Tn5252, relaxase
1217	 34.43	0	1260665..1261030	-	121	22537402	-	SAG1251	-	Tn5252, ORF 9 protein
1218	 34.71	0	1261037..1261399	-	120	22537403	-	SAG1252	-	Tn5252, ORF 10 protein
1219	 39.14	0	1261820..1263127	-	435	22537404	-	SAG1253	-	ISL3 family transposase
1220	 36.56	0	1263287..1264927	-	546	22537405	merA-1	SAG1254	-	mercuric reductase
1221	 31.55	-1	1264956..1265348	-	130	22537406	merR-1	SAG1255	-	mercuric resistance operon regulatory protein MerR
1222	 37.61	0	1266612..1268741	-	709	22537407	-	SAG1257	-	cation transporter E1-E2 family ATPase
1223	 33.88	0	1268734..1269102	-	122	22537408	cadC	SAG1258	-	cadmium efflux system accessory protein
1224	 36.33	0	1269305..1269604	+	99	22537409	-	SAG1259	-	hypothetical protein
1225	 30.29	-1	1269658..1270446	-	262	22537410	-	SAG1260	-	hypothetical protein
1226	 42.55	+1	1270455..1271051	+	198	22537411	-	SAG1261	-	hypothetical protein
1227	 44.06	+2	1271225..1273312	-	695	22537412	-	SAG1262	-	cation transporter E1-E2 family ATPase
1228	 35.35	0	1274268..1274714	-	148	22537413	-	SAG1264	-	transcriptional repressor CopY, putative
1229	 37.84	0	1275139..1275759	-	206	22537414	-	SAG1265	-	cadmium resistance transporter, putative
1230	 28.98	-1	1276299..1276757	+	152	22537415	-	SAG1266	-	hypothetical protein
1231	 29.66	-1	1276791..1277117	+	108	22537416	-	SAG1267	-	hypothetical protein
1232	 36.22	0	1277301..1277993	+	230	22537417	-	SAG1268	-	repressor protein, putative
1233	 26.67	-2	1277996..1278130	+	44	22537418	-	SAG1269	-	hypothetical protein
1234	 38.49	0	1278136..1279551	+	471	22537419	-	SAG1270	-	ImpB/MucB/SamB family protein
1235	 36.18	0	1279548..1279898	+	116	22537420	-	SAG1271	-	hypothetical protein
1236	 31.72	0	1279885..1280193	+	102	22537421	-	SAG1272	-	hypothetical protein
1237	 34.73	0	1280202..1280558	-	118	22537422	-	SAG1273	-	hypothetical protein
1238	 36.15	0	1280548..1280937	-	129	22537423	-	SAG1274	-	hypothetical protein
1239	 39.91	+1	1280934..1281161	-	75	22537424	-	SAG1275	-	hypothetical protein
1240	 38.07	0	1281215..1282291	-	358	22537425	-	SAG1276	-	hypothetical protein
1241	 41.06	+1	1282330..1282821	-	163	22537426	-	SAG1277	-	hypothetical protein
1242	 32.65	0	1283064..1283354	-	96	22537427	-	SAG1278	-	hypothetical protein
1243	 39.00	0	1283368..1283667	-	99	22537428	-	SAG1279	-	hypothetical protein
1244	 41.10	+1	1283738..1290562	-	2274	22537429	-	SAG1280	-	SNF2 family protein
1245	 38.04	0	1290611..1291162	-	183	22537430	-	SAG1281	-	hypothetical protein
1246	 42.71	+1	1291146..1291337	-	63	22537431	-	SAG1282	-	calcium-binding protein, putative
1247	 41.71	+1	1291338..1296233	-	1631	22537432	ssp-5	SAG1283	-	agglutinin receptor
1248	 33.67	0	1296512..1297102	+	196	22537433	abiGI	SAG1284	-	abortive infection protein AbiGI
1249	 31.80	0	1297099..1297944	+	281	22537434	abiGII	SAG1285	-	abortive infection protein AbiGII
1250	 41.68	+1	1298030..1300831	-	933	22537435	-	SAG1286	-	Tn5252, Orf28
1251	 40.58	+1	1300833..1303163	-	776	22537436	-	SAG1287	-	Tn5252, Orf26
1252	 41.87	+1	1303556..1304410	-	284	22537437	-	SAG1289	-	Tn5252, Orf23
1253	 45.27	+2	1304429..1304671	-	80	22537438	-	SAG1290	-	hypothetical protein
1254	 39.26	+1	1306506..1306994	-	162	22537439	-	SAG1292	-	hypothetical protein
1255	 39.15	0	1307071..1307655	-	194	22537440	-	SAG1293	-	protease, putative
1256	 35.04	0	1307658..1307891	-	77	22537441	-	SAG1294	-	hypothetical protein
1257	 40.62	+1	1307900..1308283	-	127	22537442	-	SAG1295	-	hypothetical protein
1258	 38.46	0	1308294..1308722	-	142	22537443	-	SAG1296	-	hypothetical protein
1259	 44.40	+2	1308706..1310061	-	451	22537444	-	SAG1297	-	C-5 cytosine-specific DNA methylase
1260	 33.33	0	1310113..1310208	-	31	22537445	-	SAG1298	-	hypothetical protein
1261	 40.42	+1	1310210..1311028	-	272	22537446	-	SAG1299	-	hypothetical protein
35.44	MEAN

3.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.