IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1123	 39.65	+1	1152810..1154012	-	400	22537308	rpsA	SAG1150	-	30S ribosomal protein S1
1124	 30.30	-1	1154356..1154586	-	76	22537309	-	SAG1151	-	hypothetical protein
1125	 38.12	0	1154670..1155692	-	340	22537310	ilvE	SAG1152	-	branched-chain amino acid aminotransferase
1126	 36.75	0	1155806..1158265	-	819	22537311	parC	SAG1153	-	DNA topoisomerase IV subunit A
1127	 36.60	0	1158399..1160360	-	653	22537312	parE	SAG1154	-	DNA topoisomerase IV subunit B
1128	 34.27	0	1160462..1161100	+	212	22537313	-	SAG1155	-	putative glycerol-3-phosphate acyltransferase PlsY
1129	 37.46	0	1161166..1161819	-	217	22537314	ung	SAG1156	-	uracil-DNA glycosylase
1130	 31.89	0	1161918..1162403	-	161	22537315	-	SAG1157	-	hypothetical protein
1131	 32.53	0	1162517..1163758	-	413	22537316	neuA	SAG1158	-	CMP-N-acetylneuraminic acid synthetase NeuA
1132	 34.44	0	1163769..1164398	-	209	22537317	neuD	SAG1159	-	neuD protein
1133	 36.36	0	1164395..1165549	-	384	22537318	neuC	SAG1160	-	UDP-N-acetylglucosamine-2-epimerase NeuC
1134	 35.58	0	1165626..1166651	-	341	22537319	neuB	SAG1161	-	N-acetyl neuramic acid synthetase NeuB
1135	 31.55	-1	1166651..1168051	-	466	22537320	cpsL	SAG1162	-	polysaccharide biosynthesis protein CpsL
1136	 30.72	-1	1168048..1169004	-	318	22537321	cpsK	SAG1163	-	polysaccharide biosynthesis protein CpsK(V)
1137	 26.09	-2	1169001..1169966	-	321	22537322	cpsJ	SAG1164	-	glycosyl transferase CpsJ(V)
1138	 28.96	-1	1169959..1170942	-	327	22537323	cpsO	SAG1165	-	glycosyl transferase CpsO(V)
1139	 28.94	-1	1170946..1171833	-	295	22537324	cpsN	SAG1166	-	glycosyl transferase CpsN(V)
1140	 28.65	-1	1171859..1172584	-	241	22537325	cpsM	SAG1167	-	polysaccharide biosynthesis protein CpsM(V)
1141	 25.02	-2	1172623..1173717	-	364	22537326	cpsH	SAG1168	-	polysaccharide biosynthesis protein cpsH(V)
1142	 34.15	0	1173704..1174195	-	163	22537327	cpsG	SAG1169	-	glycosyl transferase CpsG(V)
1143	 33.78	0	1174195..1174644	-	149	22537328	cpsF	SAG1170	-	polysaccharide biosynthesis protein CpsF
1144	 29.95	-1	1174668..1176056	-	462	22537329	cpsE	SAG1171	-	glycosyl transferase CpsE
1145	 33.91	0	1176069..1176758	-	229	22537330	cpsD	SAG1172	-	cpsD protein
1146	 30.88	-1	1176769..1177461	-	230	22537331	cpsC	SAG1173	-	cpsC protein
1147	 30.60	-1	1177470..1178201	-	243	22537332	cpsB	SAG1174	-	capsular polysaccharide biosynthesis protein CpsB
1148	 31.89	0	1178207..1179664	-	485	22537333	cpsA	SAG1175	-	capsular polysaccharide biosynthesis protein CpsA
1149	 34.82	0	1179904..1180776	+	290	22537334	-	SAG1176	-	LysR family transcriptional regulator
1150	 32.68	0	1180801..1181568	-	255	22537335	-	SAG1177	-	hypothetical protein
1151	 37.27	0	1181577..1182287	-	236	22537336	deoD-1	SAG1178	-	purine nucleoside phosphorylase
1152	 35.16	0	1182271..1183527	-	418	22537337	-	SAG1179	-	voltage-gated chloride channel family protein
1153	 41.98	+1	1183529..1184338	-	269	22537338	deoD-2	SAG1180	-	purine nucleoside phosphorylase
1154	 35.78	0	1184377..1184784	-	135	22537339	arsC	SAG1181	-	arsenate reductase
1155	 42.00	+1	1184835..1186046	-	403	22537340	deoB-1	SAG1182	-	phosphopentomutase
1156	 39.73	+1	1186103..1186774	-	223	22537341	rpiA	SAG1183	-	ribose-5-phosphate isomerase A
1157	 33.33	0	1187012..1187722	-	236	22537342	-	SAG1184	-	hypothetical protein
1158	 34.98	0	1187812..1188600	-	262	22537343	estA	SAG1185	-	tributyrin esterase
1159	 37.73	0	1188657..1190318	-	553	22537344	-	SAG1186	-	metallo-beta-lactamase superfamily protein
1160	 34.51	0	1190614..1191375	-	253	22537345	-	SAG1187	-	ABC transporter, ATP-binding protein
1161	 35.30	0	1191375..1192238	-	287	22537346	-	SAG1188	-	ABC transporter, permease protein
1162	 35.72	0	1192251..1193255	-	334	22537347	-	SAG1189	-	hypothetical protein
1163	 36.29	0	1193614..1195269	+	551	22537348	pavA	SAG1190	-	adherence and virulence protein A
1164	 36.39	0	1195323..1196042	-	239	22537349	budA	SAG1191	-	alpha-acetolactate decarboxylase
1165	 40.76	+1	1196056..1197738	-	560	22537350	ilvK	SAG1192	-	acetolactate synthase
1166	 33.90	0	1197848..1199074	-	408	22537351	-	SAG1193	-	TPR domain-containing protein
1167	 33.92	0	1199064..1200254	-	396	22537352	-	SAG1194	-	hypothetical protein
1168	 34.42	0	1200346..1200807	-	153	22537353	-	SAG1195	-	MutT/nudix family protein
1169	 34.37	0	1200797..1201279	-	160	22537354	mutX	SAG1196	-	mutator MutT protein
1170	 35.82	0	1201497..1204715	+	1072	22537355	-	SAG1197	-	hyaluronate lyase
1171	 41.36	+1	1204767..1205813	-	348	22537356	rfbB	SAG1198	-	dTDP-glucose 4,6-dehydratase
1172	 38.89	0	1206020..1206613	-	197	22537357	-	SAG1199	-	dTDP-4-keto-6-deoxyglucose-3,5-epimerase
1173	 39.08	0	1206613..1207482	-	289	22537358	rfbA	SAG1200	-	glucose-1-phosphate thymidylyltransferase
1174	 37.05	0	1207541..1208644	-	367	22537359	-	SAG1201	-	iminodiacetate oxidase, putative
1175	 34.35	0	1208653..1209441	-	262	22537360	-	SAG1202	-	hypothetical protein
1176	 33.77	0	1209431..1210114	-	227	22537361	-	SAG1203	-	hypothetical protein
1177	 34.21	0	1210218..1210898	-	226	22537362	-	SAG1204	-	DNA replication protein DnaD, putative
1178	 38.15	0	1211016..1211534	-	172	22537363	apt	SAG1205	-	adenine phosphoribosyltransferase
1179	 37.12	0	1211657..1214221	-	854	22537364	-	SAG1206	-	hypothetical protein
1180	 21.21	-2	1214205..1214303	-	32	22537365	-	SAG1207	-	hypothetical protein
1181	 35.15	0	1214373..1216571	-	732	22537366	recJ	SAG1208	-	single-stranded-DNA-specific exonuclease RecJ
1182	 33.46	0	1216568..1217329	-	253	22537367	-	SAG1209	-	short chain dehydrogenase/reductase family oxidoreductase
1183	 36.45	0	1217331..1218260	-	309	22537368	-	SAG1210	-	ribonuclease Z
1184	 31.94	0	1218302..1218949	-	215	22537369	-	SAG1211	-	hypothetical protein
1185	 35.03	0	1218942..1220180	-	412	22537370	hflX	SAG1212	-	GTP-binding protein HflX
1186	 34.79	0	1220271..1221161	-	296	22537371	miaA	SAG1213	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1187	 36.16	0	1221272..1221448	+	58	22537372	-	SAG1214	-	hypothetical protein
1188	 34.53	0	1221490..1222407	-	305	22537373	-	SAG1215	-	hypothetical protein
1189	 35.73	0	1222542..1226300	-	1252	22537374	-	SAG1216	-	pullulanase, putative
1190	 34.87	0	1227217..1227801	-	194	22537375	-	SAG1218	-	hypothetical protein
1191	 39.59	+1	1227898..1229304	-	468	22537376	-	SAG1219	-	dipeptidase PepV
1192	 33.67	0	1229351..1229953	-	200	22537377	-	SAG1220	-	nitroreductase family protein
1193	 34.57	0	1231946..1233727	-	593	22537378	uvrC	SAG1222	-	excinuclease ABC subunit C
1194	 35.16	0	1233886..1234653	+	255	22537379	-	SAG1223	-	hypothetical protein
1195	 34.68	0	1234712..1236052	-	446	22537380	-	SAG1224	-	MATE efflux family protein
1196	 35.77	0	1236152..1236562	-	136	22537381	-	SAG1225	-	hypothetical protein
1197	 35.34	0	1236572..1237069	-	165	22537382	-	SAG1226	-	hypothetical protein
1198	 30.65	-1	1237291..1237887	+	198	22537383	-	SAG1227	-	hypothetical protein
1199	 38.83	0	1238076..1238366	+	96	22537384	-	SAG1228	-	ISSdy1, transposase OrfA
1200	 41.41	+1	1238402..1239181	+	259	22537385	-	SAG1229	-	ISSdy1, transposase OrfB
1201	 36.43	0	1239405..1239695	+	96	22537386	-	SAG1230	-	hypothetical protein
1202	 40.02	+1	1241015..1243483	-	822	22537387	-	SAG1233	-	streptococcal histidine triad family protein
1203	 40.17	+1	1243496..1244416	-	306	22537388	lmb	SAG1234	-	laminin-binding surface protein
1204	 44.13	+2	1244650..1245927	-	425	22537389	-	SAG1235	-	GBSi1, group II intron, maturase
1205	 30.64	-1	1250615..1251949	-	444	22537390	-	SAG1237	-	hypothetical protein
1206	 30.54	-1	1252057..1252665	-	202	22537391	-	SAG1238	-	hypothetical protein
1207	 27.71	-2	1252715..1252945	-	76	22537392	-	SAG1239	-	hypothetical protein
1208	 35.51	0	1253409..1253684	+	91	22537393	-	SAG1241	-	IS3 family transposase OrfA
1209	 38.49	0	1254003..1254293	+	96	22537394	-	SAG1243	-	ISSdy1, transposase OrfA
1210	 41.28	+1	1254329..1255108	+	259	22537395	-	SAG1244	-	ISSdy1, transposase OrfB
1211	 29.06	-1	1255213..1255329	-	38	22537396	-	SAG1245	-	hypothetical protein
1212	 25.13	-2	1255316..1256485	+	389	22537397	-	SAG1246	-	hypothetical protein
1213	 32.25	0	1256680..1257879	-	399	22537398	-	SAG1247	-	phage integrase family site specific recombinase
1214	 34.65	0	1257902..1258129	-	75	22537399	-	SAG1248	-	hypothetical protein
1215	 33.78	0	1258408..1258632	-	74	22537400	-	SAG1249	-	Cro/CI family transcriptional regulator
1216	 32.10	0	1258813..1260678	-	621	22537401	-	SAG1250	-	Tn5252, relaxase
1217	 34.43	0	1260665..1261030	-	121	22537402	-	SAG1251	-	Tn5252, ORF 9 protein
1218	 34.71	0	1261037..1261399	-	120	22537403	-	SAG1252	-	Tn5252, ORF 10 protein
1219	 39.14	0	1261820..1263127	-	435	22537404	-	SAG1253	-	ISL3 family transposase
1220	 36.56	0	1263287..1264927	-	546	22537405	merA-1	SAG1254	-	mercuric reductase
1221	 31.55	-1	1264956..1265348	-	130	22537406	merR-1	SAG1255	-	mercuric resistance operon regulatory protein MerR
1222	 37.61	0	1266612..1268741	-	709	22537407	-	SAG1257	-	cation transporter E1-E2 family ATPase
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.