IslandPathversion 1.0

IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.44 STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1047	 37.31	0	1083528..1084784	-	418	22537232	glyA	SAG1074	-	serine hydroxymethyltransferase
1048	 36.41	0	1084876..1085427	-	183	22537233	-	SAG1075	-	Sua5/YciO/YrdC/YwlC family protein
1049	 33.09	0	1085465..1086295	-	276	22537234	-	SAG1076	-	HemK family modification methylase
1050	 37.13	0	1086295..1087374	-	359	22537235	prfA	SAG1077	-	peptide chain release factor 1
1051	 33.33	0	1087409..1087978	-	189	22537236	tdk	SAG1078	-	thymidine kinase
1052	 35.52	0	1088116..1088298	+	60	22537237	xylM	SAG1079	-	4-oxalocrotonate tautomerase
1053	 27.78	-2	1088274..1088417	-	47	22537238	-	SAG1080	-	hypothetical protein
1054	 34.72	0	1088447..1089385	+	312	22537239	-	SAG1081	-	ApbE family protein
1055	 34.49	0	1089403..1090005	+	200	22537240	-	SAG1082	-	hypothetical protein
1056	 38.11	0	1090029..1091264	+	411	22537241	-	SAG1083	-	hypothetical protein
1057	 34.35	0	1091363..1092151	+	262	22537242	-	SAG1084	-	formate/nitrite transporter family protein
1058	 36.08	0	1092250..1093524	-	424	22537243	pbuX	SAG1085	-	xanthine permease
1059	 36.94	0	1093524..1094105	-	193	22537244	xpt	SAG1086	-	xanthine phosphoribosyltransferase
1060	 36.89	0	1094361..1095344	-	327	22537245	guaC	SAG1087	-	guanosine 5'-monophosphate oxidoreductase
1061	 35.72	0	1095548..1096888	-	446	22537246	-	SAG1088	-	EmrB/QacA family drug resistance transporter
1062	 33.19	0	1097159..1097851	+	230	22537247	-	SAG1089	-	hypothetical protein
1063	 35.93	0	1097922..1099922	-	666	22537248	-	SAG1090	-	potassium uptake protein, putative
1064	 35.94	0	1100057..1100707	-	216	22537249	-	SAG1091	-	short chain dehydrogenase/reductase family oxidoreductase
1065	 36.66	0	1100881..1101873	-	330	22537250	eutD	SAG1092	-	phosphotransacetylase
1066	 36.05	0	1101899..1102783	-	294	22537251	-	SAG1093	-	ribosomal large subunit pseudouridine synthase D
1067	 36.08	0	1102780..1103616	-	278	22537252	ppnK	SAG1094	-	inorganic polyphosphate/ATP-NAD kinase
1068	 36.16	0	1103591..1104262	-	223	22537253	-	SAG1095	-	GTP pyrophosphokinase family protein
1069	 32.98	0	1104372..1104944	+	190	22537254	-	SAG1096	-	hypothetical protein
1070	 38.77	0	1105121..1106095	+	324	22537255	prsA-2	SAG1097	-	ribose-phosphate pyrophosphokinase
1071	 36.83	0	1106099..1107214	+	371	22537256	iscS-1	SAG1098	-	cysteine desulphurase
1072	 32.47	0	1107216..1107563	+	115	22537257	-	SAG1099	-	hypothetical protein
1073	 35.39	0	1107724..1108356	+	210	22537258	-	SAG1100	-	redox-sensing transcriptional repressor Rex
1074	 33.48	0	1108369..1109049	-	226	22537259	radC	SAG1101	-	DNA repair protein RadC
1075	 34.22	0	1109145..1110278	-	377	22537260	-	SAG1102	-	hypothetical protein
1076	 36.12	0	1110369..1111805	-	478	22537261	arb	SAG1103	-	6-phospho-beta-glucosidase
1077	 31.87	0	1111968..1112582	-	204	22537262	-	SAG1104	-	platelet activating factor, putative
1078	 35.28	0	1112683..1113504	-	273	22537263	-	SAG1105	-	HAD superfamily hydrolase
1079	 31.40	-1	1114129..1115058	+	309	22537264	-	SAG1106	-	AraC family transcriptional regulator
1080	 35.03	0	1115115..1116647	-	510	22537265	-	SAG1107	-	voltage-gated chloride channel family protein
1081	 34.54	0	1116756..1117829	-	357	22537266	potD	SAG1108	-	spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein
1082	 32.69	0	1117822..1118598	-	258	22537267	potC	SAG1109	-	spermidine/putrescine ABC transporter, permease protein
1083	 35.09	0	1118595..1119389	-	264	22537268	potB	SAG1110	-	spermidine/putrescine ABC transporter, permease protein
1084	 36.54	0	1119373..1120527	-	384	22537269	potA	SAG1111	-	spermidine/putrescine ABC transporter, ATP-binding protein
1085	 38.65	0	1120576..1121478	-	300	22537270	murB	SAG1112	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1086	 35.58	0	1121622..1122110	-	162	22537271	folK	SAG1113	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
1087	 32.78	0	1122107..1122469	-	120	22537272	folB	SAG1114	-	dihydroneopterin aldolase
1088	 37.44	0	1122471..1123274	-	267	22537273	folP	SAG1115	-	dihydropteroate synthase
1089	 37.94	0	1123278..1123841	-	187	22537274	folE	SAG1116	-	GTP cyclohydrolase I
1090	 35.55	0	1123860..1125122	-	420	22537275	folC	SAG1117	-	folylpolyglutamate synthase
1091	 31.64	-1	1125124..1126011	-	295	22537276	rarD	SAG1118	-	rarD protein
1092	 36.33	0	1125998..1126864	-	288	22537277	thrB	SAG1119	-	homoserine kinase
1093	 36.21	0	1126866..1128149	-	427	22537278	hom	SAG1120	-	homoserine dehydrogenase
1094	 36.94	0	1128326..1129213	+	295	22537279	-	SAG1121	-	polysaccharide deacetylase family protein
1095	 36.89	0	1129236..1130783	-	515	22537280	-	SAG1122	-	transporter, BCCT family protein
1096	 31.43	-1	1130793..1130897	-	34	22537281	-	SAG1123	-	hypothetical protein
1097	 38.27	0	1130926..1132302	-	458	22537282	-	SAG1124	-	aldehyde dehydrogenase family protein
1098	 33.73	0	1132376..1133383	-	335	22537283	-	SAG1125	-	hypothetical protein
1099	 32.90	0	1133491..1134177	-	228	22537284	-	SAG1126	-	hypothetical protein
1100	 34.15	0	1134596..1135936	+	446	22537285	-	SAG1127	-	hypothetical protein
1101	 33.84	0	1136133..1136330	+	65	22537286	-	SAG1128	-	Cro/CI family transcriptional regulator
1102	 22.52	-2	1136375..1136485	+	36	22537287	-	SAG1129	-	hypothetical protein
1103	 28.00	-1	1136814..1136963	+	49	22537288	-	SAG1130	-	hypothetical protein
1104	 34.75	0	1137039..1137533	-	164	22537289	tpx	SAG1131	-	thiol peroxidase
1105	 34.39	0	1137606..1138265	-	219	22537290	-	SAG1132	-	hypothetical protein
1106	 34.38	0	1138265..1139029	-	254	22537291	-	SAG1133	-	hypothetical protein
1107	 35.20	0	1139034..1139675	-	213	22537292	-	SAG1134	-	GntR family transcriptional regulator
1108	 37.50	0	1139839..1140390	-	183	22537293	-	SAG1135	-	gls24 protein, putative
1109	 33.84	0	1140412..1140609	-	65	22537294	-	SAG1136	-	hypothetical protein
1110	 36.28	0	1140656..1141198	-	180	22537295	-	SAG1137	-	gls24 protein, putative
1111	 36.41	0	1141254..1141448	-	64	22537296	-	SAG1138	-	hypothetical protein
1112	 32.30	0	1141458..1142039	-	193	22537297	-	SAG1139	-	hypothetical protein
1113	 38.15	0	1142054..1142302	-	82	22537298	-	SAG1140	-	hypothetical protein
1114	 36.28	0	1142350..1142688	-	112	22537299	-	SAG1141	-	hypothetical protein
1115	 36.67	0	1143007..1145286	-	759	22537300	pcrA	SAG1142	-	ATP-dependent DNA helicase PcrA
1116	 35.66	0	1145392..1145778	-	128	22537301	-	SAG1143	-	hypothetical protein
1117	 35.37	0	1145911..1147236	-	441	22537302	uraA	SAG1144	-	uracil permease
1118	 36.90	0	1147833..1149179	+	448	22537303	-	SAG1145	-	sodium:alanine symporter family protein
1119	 33.66	0	1149243..1150478	+	411	22537304	-	SAG1146	-	cation efflux family protein
1120	 34.35	0	1150637..1151029	+	130	22537305	-	SAG1147	-	hypothetical protein
1121	 37.21	0	1151010..1151705	+	231	22537306	-	SAG1148	-	hypothetical protein
1122	 33.33	0	1151774..1152397	+	207	22537307	-	SAG1149	-	hypothetical protein
1123	 39.65	+1	1152810..1154012	-	400	22537308	rpsA	SAG1150	-	30S ribosomal protein S1
1124	 30.30	-1	1154356..1154586	-	76	22537309	-	SAG1151	-	hypothetical protein
1125	 38.12	0	1154670..1155692	-	340	22537310	ilvE	SAG1152	-	branched-chain amino acid aminotransferase
1126	 36.75	0	1155806..1158265	-	819	22537311	parC	SAG1153	-	DNA topoisomerase IV subunit A
1127	 36.60	0	1158399..1160360	-	653	22537312	parE	SAG1154	-	DNA topoisomerase IV subunit B
1128	 34.27	0	1160462..1161100	+	212	22537313	-	SAG1155	-	putative glycerol-3-phosphate acyltransferase PlsY
1129	 37.46	0	1161166..1161819	-	217	22537314	ung	SAG1156	-	uracil-DNA glycosylase
1130	 31.89	0	1161918..1162403	-	161	22537315	-	SAG1157	-	hypothetical protein
1131	 32.53	0	1162517..1163758	-	413	22537316	neuA	SAG1158	-	CMP-N-acetylneuraminic acid synthetase NeuA
1132	 34.44	0	1163769..1164398	-	209	22537317	neuD	SAG1159	-	neuD protein
1133	 36.36	0	1164395..1165549	-	384	22537318	neuC	SAG1160	-	UDP-N-acetylglucosamine-2-epimerase NeuC
1134	 35.58	0	1165626..1166651	-	341	22537319	neuB	SAG1161	-	N-acetyl neuramic acid synthetase NeuB
1135	 31.55	-1	1166651..1168051	-	466	22537320	cpsL	SAG1162	-	polysaccharide biosynthesis protein CpsL
1136	 30.72	-1	1168048..1169004	-	318	22537321	cpsK	SAG1163	-	polysaccharide biosynthesis protein CpsK(V)
1137	 26.09	-2	1169001..1169966	-	321	22537322	cpsJ	SAG1164	-	glycosyl transferase CpsJ(V)
1138	 28.96	-1	1169959..1170942	-	327	22537323	cpsO	SAG1165	-	glycosyl transferase CpsO(V)
1139	 28.94	-1	1170946..1171833	-	295	22537324	cpsN	SAG1166	-	glycosyl transferase CpsN(V)
1140	 28.65	-1	1171859..1172584	-	241	22537325	cpsM	SAG1167	-	polysaccharide biosynthesis protein CpsM(V)
1141	 25.02	-2	1172623..1173717	-	364	22537326	cpsH	SAG1168	-	polysaccharide biosynthesis protein cpsH(V)
1142	 34.15	0	1173704..1174195	-	163	22537327	cpsG	SAG1169	-	glycosyl transferase CpsG(V)
1143	 33.78	0	1174195..1174644	-	149	22537328	cpsF	SAG1170	-	polysaccharide biosynthesis protein CpsF
1144	 29.95	-1	1174668..1176056	-	462	22537329	cpsE	SAG1171	-	glycosyl transferase CpsE
1145	 33.91	0	1176069..1176758	-	229	22537330	cpsD	SAG1172	-	cpsD protein
1146	 30.88	-1	1176769..1177461	-	230	22537331	cpsC	SAG1173	-	cpsC protein
35.44	MEAN

3.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.