IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
61	 41.37	+1	78288..79121	+	277	22536246	rplB	SAG0061	-	50S ribosomal protein L2
62	 39.78	+1	79220..79498	+	92	22536247	rpsS	SAG0062	-	30S ribosomal protein S19
63	 39.42	+1	79514..79858	+	114	22536248	rplV	SAG0063	-	50S ribosomal protein L22
64	 40.83	+1	79871..80524	+	217	22536249	rpsC	SAG0064	-	30S ribosomal protein S3
65	 42.75	+1	80528..80941	+	137	22536250	rplP	SAG0065	-	50S ribosomal protein L16
66	 34.78	0	80951..81157	+	68	22536251	rpmC	SAG0066	-	50S ribosomal protein L29
67	 37.93	0	81183..81443	+	86	22536252	rpsQ	SAG0067	-	30S ribosomal protein S17
68	 44.17	+2	81468..81836	+	122	22536253	rplN	SAG0068	-	50S ribosomal protein L14
69	 38.89	0	81916..82221	+	101	22536254	rplX	SAG0069	-	50S ribosomal protein L24
70	 39.04	0	82245..82787	+	180	22536255	rplE	SAG0070	-	50S ribosomal protein L5
71	 43.55	+2	82805..82990	+	61	22536256	rpsN	SAG0071	-	30S ribosomal protein S14
72	 35.09	0	83145..83543	+	132	22536257	rpsH	SAG0072	-	30S ribosomal protein S8
73	 38.92	0	83653..84189	+	178	22536258	rplF	SAG0073	-	50S ribosomal protein L6
74	 44.26	+2	84290..84646	+	118	22536259	rplR	SAG0074	-	50S ribosomal protein L18
75	 43.84	+2	84665..85159	+	164	22536260	rpsE	SAG0075	-	30S ribosomal protein S5
76	 38.33	0	85174..85353	+	59	22536261	rpmD	SAG0076	-	50S ribosomal protein L30
77	 40.59	+1	85478..85918	+	146	22536262	rplO	SAG0077	-	50S ribosomal protein L15
78	 34.94	0	85939..87243	+	434	22536263	secY	SAG0078	-	preprotein translocase subunit SecY
79	 38.34	0	87338..87976	+	212	22536264	adk	SAG0079	-	adenylate kinase
80	 37.90	0	88092..88310	+	72	22536265	infA	SAG0080	-	translation initiation factor IF-1
81	 38.46	0	88336..88452	+	38	22536266	rpmJ	SAG0081	-	50S ribosomal protein L36
82	 40.16	+1	88470..88835	+	121	22536267	rpsM	SAG0082	-	30S ribosomal protein S13
83	 44.01	+2	88853..89236	+	127	161485618	rpsK	SAG0083	-	30S ribosomal protein S11
84	 37.06	0	89286..90224	+	312	22536269	rpoA	SAG0084	-	DNA-directed RNA polymerase subunit alpha
85	 39.79	+1	90239..90625	+	128	22536270	rplQ	SAG0085	-	50S ribosomal protein L17
86	 29.07	-1	97819..98076	+	85	22536271	-	SAG0086	-	putative lipoprotein
87	 36.11	0	98067..98246	+	59	22536272	-	SAG0087	-	hypothetical protein
88	 33.33	0	98316..98486	+	56	22536273	-	SAG0088	-	hypothetical protein
89	 30.62	-1	99401..99952	+	183	22536274	-	SAG0089	-	hypothetical protein
90	 28.33	-1	100172..100591	+	139	22536275	-	SAG0090	-	hypothetical protein
91	 29.66	-1	100836..101270	+	144	22536276	-	SAG0091	-	transcriptional regulator ComX1, putative
92	 39.25	+1	101392..102084	+	230	22536277	-	SAG0092	-	phosphoglycerate mutase family protein
93	 35.86	0	102081..102833	+	250	22536278	-	SAG0093	-	D-alanyl-D-alanine carboxypeptidase family protein
94	 31.94	0	102830..103405	+	191	22536279	-	SAG0094	-	N-acetylmuramoyl-L-alanine amidase
95	 37.78	0	103548..104582	+	344	22536280	hrcA	SAG0095	-	heat-inducible transcription repressor
96	 40.66	+1	104585..105157	+	190	22536281	grpE	SAG0096	-	heat shock protein GrpE
97	 39.78	+1	105338..107167	+	609	22536282	dnaK	SAG0097	-	molecular chaperone DnaK
98	 41.49	+1	107456..108595	+	379	22536283	dnaJ	SAG0098	-	dnaJ protein
99	 33.89	0	108709..109956	+	415	22536284	-	SAG0099	-	GntR family transcriptional regulator
100	 36.55	0	110027..110803	+	258	22536285	truA	SAG0100	-	tRNA pseudouridine synthase A
101	 36.76	0	110766..111524	+	252	22536286	-	SAG0101	-	phosphomethylpyrimidine kinase
102	 36.77	0	111534..111998	+	154	22536287	-	SAG0102	-	hypothetical protein
103	 38.42	0	111995..112564	+	189	22536288	-	SAG0103	-	hypothetical protein
104	 33.81	0	112601..113443	-	280	22536289	-	SAG0104	-	hypothetical protein
105	 37.07	0	113600..114883	+	427	22536290	tig	SAG0105	-	trigger factor
106	 37.67	0	115072..115647	+	191	22536291	-	SAG0106	-	DNA-directed RNA polymerase subunit delta
107	 39.13	0	115920..117524	+	534	22536292	pyrG	SAG0107	-	CTP synthetase
108	 33.66	0	117633..118559	+	308	22536293	-	SAG0108	-	hypothetical protein
109	 38.70	0	118754..119200	+	148	22536294	dut	SAG0109	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
110	 39.12	0	119362..120726	+	454	22536295	radA	SAG0110	-	DNA repair protein RadA
111	 38.15	0	120862..121359	+	165	22536296	-	SAG0111	-	carbonic anhydrase-related protein
112	 35.08	0	121513..122832	+	439	22536297	-	SAG0112	-	pyridine nucleotide-disulfide oxidoreductase
113	 38.83	0	123041..124495	+	484	22536298	gltX	SAG0113	-	glutamyl-tRNA synthetase
114	 37.36	0	124535..125503	-	322	22536299	rbsB	SAG0114	-	ribose ABC transporter, periplasmic D-ribose-binding protein
115	 38.05	0	125556..126488	-	310	22536300	rbsC	SAG0115	-	ribose ABC transporter, permease protein
116	 38.27	0	126499..127977	-	492	22536301	rbsA	SAG0116	-	ribose ABC transporter, ATP-binding protein
117	 35.09	0	127993..128391	-	132	22536302	rbsD	SAG0117	-	D-ribose pyranase
118	 37.17	0	128366..129277	-	303	22536303	rbsK	SAG0118	-	ribokinase
119	 36.68	0	129270..130256	-	328	22536304	rbsR	SAG0119	-	ribose operon repressor RbsR
120	 22.22	-2	130314..130412	-	32	22536305	-	SAG0120	-	hypothetical protein
121	 32.69	0	130438..131526	+	362	22536306	-	SAG0121	-	permease, putative
122	 37.55	0	131526..132212	+	228	22536307	-	SAG0122	-	ABC transporter, ATP-binding protein
123	 34.23	0	132243..132914	+	223	22536308	-	SAG0123	-	DNA-binding response regulator
124	 33.89	0	132907..133977	+	356	22536309	-	SAG0124	-	sensor histidine kinase
125	 36.94	0	134131..135321	+	396	22536310	argG	SAG0125	-	argininosuccinate synthase
126	 34.63	0	135340..136728	+	462	22536311	argH	SAG0126	-	argininosuccinate lyase
127	 41.27	+1	136869..137750	+	293	22536312	fba	SAG0127	-	fructose-bisphosphate aldolase
128	 38.13	0	137834..138751	-	305	22536313	-	SAG0128	-	L-2-hydroxyisocaproate dehydrogenase
129	 38.10	0	138990..139178	+	62	22536314	rpmB	SAG0129	-	50S ribosomal protein L28
130	 37.43	0	139310..139675	+	121	22536315	-	SAG0130	-	hypothetical protein
131	 39.58	+1	139708..141339	+	543	22536316	-	SAG0131	-	DAK2 domain-containing protein
132	 34.12	0	141487..142371	+	294	22536317	-	SAG0132	-	SPFH domain-containing protein/band 7 family protein
133	 35.04	0	142463..142579	-	38	22536318	-	SAG0133	-	hypothetical protein
134	 44.67	+2	142947..143237	-	96	22536319	-	SAG0134	-	hypothetical protein
135	 35.90	0	143579..144319	-	246	22536320	-	SAG0135	-	amino acid ABC transporter, ATP-binding protein
136	 36.62	0	144329..145879	-	516	22536321	-	SAG0136	-	amino acid ABC transporter, amino acid-binding protein/permease protein
137	 33.81	0	146015..147898	+	627	22536322	-	SAG0137	-	hypothetical protein
138	 35.83	0	147944..148783	+	279	22536323	uppP	SAG0138	-	undecaprenyl pyrophosphate phosphatase
139	 32.94	0	148903..149658	+	251	22536324	-	SAG0139	-	adaptor protein
140	 33.94	0	149660..150820	+	386	22536325	-	SAG0140	-	glycosyl transferase, group 4 family protein
141	 38.52	0	150985..151755	+	256	22536326	-	SAG0141	-	ABC transporter, ATP-binding protein
142	 38.40	0	151792..153054	+	420	22536327	-	SAG0142	-	hypothetical protein
143	 38.28	0	153056..154288	+	410	22536328	csdB	SAG0143	-	selenocysteine lyase
144	 37.61	0	154275..154718	+	147	22536329	-	SAG0144	-	NifU family protein
145	 36.86	0	154818..156236	+	472	22536330	-	SAG0145	-	hypothetical protein
146	 36.45	0	156308..157495	-	395	22536331	-	SAG0146	-	penicillin-binding protein 4, putative
147	 35.84	0	157648..158883	-	411	22536332	-	SAG0147	-	D-alanyl-D-alanine carboxypeptidase family protein
148	 37.38	0	159124..160779	+	551	22536333	-	SAG0148	-	oligopeptide ABC transporter, substrate-binding protein, putative
149	 38.14	0	160898..161812	+	304	22536334	-	SAG0149	-	oligopeptide ABC transporter, permease protein
150	 36.14	0	161822..162853	+	343	22536335	-	SAG0150	-	oligopeptide ABC transporter, permease protein
151	 38.11	0	162866..163912	+	348	22536336	-	SAG0151	-	oligopeptide ABC transporter, ATP-binding protein
152	 36.01	0	163912..164844	+	310	22536337	-	SAG0152	-	oligopeptide ABC transporter, ATP-binding protein
153	 32.63	0	170382..171233	+	283	22536338	ispE	SAG0153	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
154	 32.21	0	171319..171762	+	147	22536339	adcR	SAG0154	-	adc operon repressor AdcR
155	 38.12	0	171765..172475	+	236	22536340	-	SAG0155	-	zinc ABC transporter, ATP-binding protein
156	 36.04	0	172465..173277	+	270	22536341	-	SAG0156	-	zinc ABC transporter, permease protein
157	 36.11	0	175097..176356	-	419	22536342	tyrS	SAG0158	-	tyrosyl-tRNA synthetase
158	 36.77	0	176467..178764	+	765	22536343	-	SAG0159	-	penicillin-binding protein 1B, putative
159	 40.41	+1	179288..182863	+	1191	22536344	rpoB	SAG0160	-	DNA-directed RNA polymerase subunit beta
160	 41.66	+1	182980..186630	+	1216	22536345	rpoC	SAG0161	-	DNA-directed RNA polymerase subunit beta'
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.