IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
992	 34.77	0	1026819..1028558	-	579	22537177	-	SAG1017	-	sensor histidine kinase, putative
993	 26.83	-2	1029094..1029216	-	40	22537178	-	SAG1018	-	putative lipoprotein
994	 34.17	0	1029739..1029858	-	39	22537179	-	SAG1019	-	hypothetical protein
995	 25.00	-2	1030102..1030785	-	227	22537180	-	SAG1020	-	putative lipoprotein
996	 36.42	0	1030871..1031194	-	107	22537181	-	SAG1021	-	hypothetical protein
997	 32.58	0	1031542..1032075	-	177	22537182	-	SAG1022	-	hypothetical protein
998	 23.81	-2	1032087..1032233	-	48	22537183	-	SAG1023	-	hypothetical protein
999	 27.36	-2	1032230..1032781	-	183	22537184	-	SAG1024	-	putative lipoprotein
1000	 30.44	-1	1032786..1033235	-	149	22537185	-	SAG1025	-	hypothetical protein
1001	 27.06	-2	1035253..1035507	-	84	22537186	-	SAG1027	-	hypothetical protein
1002	 21.15	-2	1035528..1036118	-	196	22537187	-	SAG1028	-	hypothetical protein
1003	 38.24	0	1036132..1036437	-	101	22537188	-	SAG1029	-	hypothetical protein
1004	 34.32	0	1036566..1037480	-	304	22537189	-	SAG1030	-	hypothetical protein
1005	 29.20	-1	1037483..1037845	-	120	22537190	-	SAG1031	-	hypothetical protein
1006	 40.31	+1	1037950..1038207	-	85	22537191	-	SAG1032	-	hypothetical protein
1007	 39.80	+1	1038221..1042150	-	1309	22537192	-	SAG1033	-	FtsK/SpoIIIE family protein
1008	 30.36	-1	1042461..1042628	-	55	22537193	-	SAG1034	-	hypothetical protein
1009	 33.02	0	1042635..1043909	-	424	22537194	-	SAG1035	-	hypothetical protein
1010	 32.10	0	1043909..1044151	-	80	22537195	-	SAG1036	-	hypothetical protein
1011	 27.64	-2	1044135..1044608	-	157	22537196	-	SAG1037	-	hypothetical protein
1012	 33.20	0	1044617..1047628	-	1003	22537197	-	SAG1038	-	phage infection protein, putative
1013	 34.36	0	1047710..1048000	-	96	22537198	-	SAG1039	-	hypothetical protein
1014	 32.69	0	1048117..1048899	-	260	22537199	-	SAG1040	-	hypothetical protein
1015	 30.25	-1	1048896..1049219	-	107	22537200	-	SAG1041	-	hypothetical protein
1016	 36.66	0	1049346..1052528	-	1060	22537201	carB	SAG1042	-	carbamoyl phosphate synthase large subunit
1017	 35.56	0	1052559..1053635	-	358	22537202	carA-1	SAG1043	-	carbamoyl phosphate synthase small subunit
1018	 35.06	0	1053649..1054572	-	307	22537203	pyrB	SAG1044	-	aspartate carbamoyltransferase catalytic subunit
1019	 37.59	0	1054737..1056029	-	430	22537204	pyrC	SAG1045	-	dihydroorotase
1020	 38.89	0	1056041..1056670	-	209	22537205	pyrE	SAG1046	-	orotate phosphoribosyltransferase
1021	 36.89	0	1056683..1057384	-	233	22537206	pyrF	SAG1047	-	orotidine 5'-phosphate decarboxylase
1022	 35.93	0	1057597..1058829	-	410	22537207	-	SAG1048	-	hypothetical protein
1023	 35.54	0	1058869..1060410	-	513	22537208	-	SAG1049	-	ABC transporter, ATP-binding protein
1024	 37.98	0	1061049..1062125	-	358	22537209	asd	SAG1051	-	aspartate-semialdehyde dehydrogenase
1025	 27.78	-2	1062335..1062478	-	47	22537210	-	SAG1052	-	cell wall surface anchor family protein, putative
1026	 30.11	-1	1063089..1063181	+	30	22537211	-	SAG1053	-	hypothetical protein
1027	 33.71	0	1063395..1064990	-	531	22537212	cls	SAG1054	-	cardiolipin synthetase
1028	 37.58	0	1065109..1066779	-	556	22537213	fhs	SAG1055	-	formate--tetrahydrofolate ligase
1029	 34.12	0	1066868..1067887	-	339	22537214	lplA-2	SAG1056	-	lipoate-protein ligase A
1030	 35.04	0	1067914..1068792	-	292	22537215	-	SAG1057	-	hypothetical protein
1031	 35.16	0	1068761..1069579	-	272	22537216	-	SAG1058	-	hypothetical protein
1032	 31.83	0	1069572..1069904	-	110	22537217	-	SAG1059	-	glycine cleavage system H protein, putative
1033	 36.27	0	1069933..1070919	-	328	22537218	-	SAG1060	-	luciferase family protein
1034	 37.58	0	1070916..1072115	-	399	22537219	-	SAG1061	-	oxidoreductase, FMN-binding
1035	 35.45	0	1072108..1072956	-	282	22537220	-	SAG1062	-	hypothetical protein
1036	 33.62	0	1073098..1073784	+	228	22537221	-	SAG1063	-	phosphopantothenate--cysteine ligase
1037	 36.83	0	1073777..1074319	+	180	22537222	-	SAG1064	-	phosphopantothenoylcysteine decarboxylase
1038	 34.03	0	1074365..1074937	+	190	22537223	-	SAG1065	-	hypothetical protein
1039	 37.99	0	1075047..1076765	+	572	22537224	pgm	SAG1066	-	phosphoglucomutase
1040	 38.18	0	1076837..1077373	+	178	22537225	-	SAG1067	-	IS861, transposase OrfA
1041	 41.97	+1	1077349..1078182	+	277	22537226	-	SAG1068	-	IS861, transposase OrfB
1042	 29.80	-1	1078264..1078461	-	65	22537227	-	SAG1069	-	hypothetical protein
1043	 34.89	0	1078475..1080208	-	577	22537228	-	SAG1070	-	ABC transporter, ATP-binding/permease protein
1044	 33.74	0	1080209..1081930	-	573	22537229	-	SAG1071	-	ABC transporter, ATP-binding/permease protein
1045	 34.00	0	1081942..1082544	-	200	22537230	-	SAG1072	-	hypothetical protein
1046	 32.00	0	1082546..1083523	-	325	22537231	-	SAG1073	-	hypothetical protein
1047	 37.31	0	1083528..1084784	-	418	22537232	glyA	SAG1074	-	serine hydroxymethyltransferase
1048	 36.41	0	1084876..1085427	-	183	22537233	-	SAG1075	-	Sua5/YciO/YrdC/YwlC family protein
1049	 33.09	0	1085465..1086295	-	276	22537234	-	SAG1076	-	HemK family modification methylase
1050	 37.13	0	1086295..1087374	-	359	22537235	prfA	SAG1077	-	peptide chain release factor 1
1051	 33.33	0	1087409..1087978	-	189	22537236	tdk	SAG1078	-	thymidine kinase
1052	 35.52	0	1088116..1088298	+	60	22537237	xylM	SAG1079	-	4-oxalocrotonate tautomerase
1053	 27.78	-2	1088274..1088417	-	47	22537238	-	SAG1080	-	hypothetical protein
1054	 34.72	0	1088447..1089385	+	312	22537239	-	SAG1081	-	ApbE family protein
1055	 34.49	0	1089403..1090005	+	200	22537240	-	SAG1082	-	hypothetical protein
1056	 38.11	0	1090029..1091264	+	411	22537241	-	SAG1083	-	hypothetical protein
1057	 34.35	0	1091363..1092151	+	262	22537242	-	SAG1084	-	formate/nitrite transporter family protein
1058	 36.08	0	1092250..1093524	-	424	22537243	pbuX	SAG1085	-	xanthine permease
1059	 36.94	0	1093524..1094105	-	193	22537244	xpt	SAG1086	-	xanthine phosphoribosyltransferase
1060	 36.89	0	1094361..1095344	-	327	22537245	guaC	SAG1087	-	guanosine 5'-monophosphate oxidoreductase
1061	 35.72	0	1095548..1096888	-	446	22537246	-	SAG1088	-	EmrB/QacA family drug resistance transporter
1062	 33.19	0	1097159..1097851	+	230	22537247	-	SAG1089	-	hypothetical protein
1063	 35.93	0	1097922..1099922	-	666	22537248	-	SAG1090	-	potassium uptake protein, putative
1064	 35.94	0	1100057..1100707	-	216	22537249	-	SAG1091	-	short chain dehydrogenase/reductase family oxidoreductase
1065	 36.66	0	1100881..1101873	-	330	22537250	eutD	SAG1092	-	phosphotransacetylase
1066	 36.05	0	1101899..1102783	-	294	22537251	-	SAG1093	-	ribosomal large subunit pseudouridine synthase D
1067	 36.08	0	1102780..1103616	-	278	22537252	ppnK	SAG1094	-	inorganic polyphosphate/ATP-NAD kinase
1068	 36.16	0	1103591..1104262	-	223	22537253	-	SAG1095	-	GTP pyrophosphokinase family protein
1069	 32.98	0	1104372..1104944	+	190	22537254	-	SAG1096	-	hypothetical protein
1070	 38.77	0	1105121..1106095	+	324	22537255	prsA-2	SAG1097	-	ribose-phosphate pyrophosphokinase
1071	 36.83	0	1106099..1107214	+	371	22537256	iscS-1	SAG1098	-	cysteine desulphurase
1072	 32.47	0	1107216..1107563	+	115	22537257	-	SAG1099	-	hypothetical protein
1073	 35.39	0	1107724..1108356	+	210	22537258	-	SAG1100	-	redox-sensing transcriptional repressor Rex
1074	 33.48	0	1108369..1109049	-	226	22537259	radC	SAG1101	-	DNA repair protein RadC
1075	 34.22	0	1109145..1110278	-	377	22537260	-	SAG1102	-	hypothetical protein
1076	 36.12	0	1110369..1111805	-	478	22537261	arb	SAG1103	-	6-phospho-beta-glucosidase
1077	 31.87	0	1111968..1112582	-	204	22537262	-	SAG1104	-	platelet activating factor, putative
1078	 35.28	0	1112683..1113504	-	273	22537263	-	SAG1105	-	HAD superfamily hydrolase
1079	 31.40	-1	1114129..1115058	+	309	22537264	-	SAG1106	-	AraC family transcriptional regulator
1080	 35.03	0	1115115..1116647	-	510	22537265	-	SAG1107	-	voltage-gated chloride channel family protein
1081	 34.54	0	1116756..1117829	-	357	22537266	potD	SAG1108	-	spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein
1082	 32.69	0	1117822..1118598	-	258	22537267	potC	SAG1109	-	spermidine/putrescine ABC transporter, permease protein
1083	 35.09	0	1118595..1119389	-	264	22537268	potB	SAG1110	-	spermidine/putrescine ABC transporter, permease protein
1084	 36.54	0	1119373..1120527	-	384	22537269	potA	SAG1111	-	spermidine/putrescine ABC transporter, ATP-binding protein
1085	 38.65	0	1120576..1121478	-	300	22537270	murB	SAG1112	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1086	 35.58	0	1121622..1122110	-	162	22537271	folK	SAG1113	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
1087	 32.78	0	1122107..1122469	-	120	22537272	folB	SAG1114	-	dihydroneopterin aldolase
1088	 37.44	0	1122471..1123274	-	267	22537273	folP	SAG1115	-	dihydropteroate synthase
1089	 37.94	0	1123278..1123841	-	187	22537274	folE	SAG1116	-	GTP cyclohydrolase I
1090	 35.55	0	1123860..1125122	-	420	22537275	folC	SAG1117	-	folylpolyglutamate synthase
1091	 31.64	-1	1125124..1126011	-	295	22537276	rarD	SAG1118	-	rarD protein
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.