IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
954	 34.18	0	987103..988764	+	553	22537139	-	SAG0979	-	ABC transporter, substrate-binding protein
955	 32.30	0	988797..989570	-	257	22537140	-	SAG0980	-	hypothetical protein
956	 35.52	0	989560..990246	-	228	22537141	-	SAG0981	-	satD protein
957	 39.40	+1	990313..991878	-	521	22537142	ffh	SAG0982	-	signal recognition particle protein Ffh
958	 32.43	0	991896..992228	-	110	22537143	-	SAG0983	-	hypothetical protein
959	 33.33	0	992317..993630	-	437	22537144	-	SAG0984	-	sensor histidine kinase CiaH
960	 34.07	0	993614..994294	-	226	22537145	ciaR	SAG0985	-	DNA-binding response regulator CiaR
961	 36.04	0	994456..997005	-	849	22537146	pepN	SAG0986	-	aminopeptidase N
962	 36.24	0	997151..997804	-	217	22537147	phoU	SAG0987	-	phosphate transport system regulatory protein PhoU
963	 37.81	0	997838..998596	-	252	22537148	-	SAG0988	-	phosphate ABC transporter, ATP-binding protein PstB, putative
964	 36.32	0	998608..999411	-	267	22537149	-	SAG0989	-	phosphate ABC transporter, ATP-binding protein PstB, putative
965	 39.19	0	999423..1000310	-	295	22537150	-	SAG0990	-	phosphate ABC transporter, permease protein PstA, putative
966	 36.60	0	1000300..1001217	-	305	22537151	-	SAG0991	-	phosphate ABC transporter, permease protein
967	 37.05	0	1001263..1002123	-	286	22537152	-	SAG0992	-	phosphate ABC transporter, phosphate-binding protein
968	 36.54	0	1002308..1003618	-	436	22537153	-	SAG0993	-	NOL1/NOP2/sun family protein
969	 35.16	0	1003686..1004450	-	254	22537154	-	SAG0994	-	inositol monophosphatase family protein
970	 33.69	0	1004440..1004721	-	93	22537155	-	SAG0995	-	hypothetical protein
971	 35.27	0	1004714..1005127	-	137	22537156	spxA	SAG0996	-	transcriptional regulator Spx
972	 33.87	0	1005170..1006102	-	310	22537157	-	SAG0997	-	bifunctional riboflavin kinase/FMN adenylyltransferase
973	 35.25	0	1006115..1006999	-	294	22537158	truB	SAG0998	-	tRNA pseudouridine synthase B
974	 33.56	0	1007091..1007522	-	143	22537159	-	SAG0999	-	acetyltransferase
975	 32.63	0	1007535..1008806	-	423	22537160	-	SAG1000	-	hypothetical protein
976	 37.06	0	1008840..1009430	-	196	22537161	-	SAG1001	-	hypothetical protein
977	 37.54	0	1009537..1010415	-	292	22537162	-	SAG1002	-	protease, putative
978	 32.61	0	1010521..1013151	-	876	22537163	-	SAG1003	-	permease, putative
979	 38.18	0	1013163..1013864	-	233	22537164	-	SAG1004	-	ABC transporter, ATP-binding protein
980	 36.26	0	1014001..1016121	-	706	22537165	topA	SAG1005	-	DNA topoisomerase I
981	 34.28	0	1016216..1017058	-	280	22537166	dprA	SAG1006	-	DprA/SMF protein, putative DNA processing factor
982	 35.18	0	1017196..1018224	-	342	22537167	-	SAG1007	-	iron-compound ABC transporter, iron-compound-binding protein
983	 33.20	0	1018286..1019047	-	253	22537168	-	SAG1008	-	iron compound ABC transporter, ATP-binding protein
984	 31.28	-1	1019044..1020018	-	324	22537169	-	SAG1009	-	iron compound ABC transporter, permease protein
985	 35.41	0	1020015..1020977	-	320	22537170	-	SAG1010	-	iron compound ABC transporter, permease protein
986	 37.89	0	1021216..1021764	-	182	22537171	-	SAG1011	-	acetyltransferase
987	 33.60	0	1021785..1022546	-	253	22537172	rnhB	SAG1012	-	ribonuclease HII
988	 35.92	0	1022533..1023384	-	283	22537173	rbgA	SAG1013	-	ribosomal biogenesis GTPase
989	 36.30	0	1023660..1024232	-	190	22537174	-	SAG1014	-	hypothetical protein
990	 36.50	0	1024433..1025917	-	494	22537175	-	SAG1015	-	carbon starvation protein CstA, putative
991	 35.92	0	1026073..1026807	-	244	22537176	-	SAG1016	-	response regulator
992	 34.77	0	1026819..1028558	-	579	22537177	-	SAG1017	-	sensor histidine kinase, putative
993	 26.83	-2	1029094..1029216	-	40	22537178	-	SAG1018	-	putative lipoprotein
994	 34.17	0	1029739..1029858	-	39	22537179	-	SAG1019	-	hypothetical protein
995	 25.00	-2	1030102..1030785	-	227	22537180	-	SAG1020	-	putative lipoprotein
996	 36.42	0	1030871..1031194	-	107	22537181	-	SAG1021	-	hypothetical protein
997	 32.58	0	1031542..1032075	-	177	22537182	-	SAG1022	-	hypothetical protein
998	 23.81	-2	1032087..1032233	-	48	22537183	-	SAG1023	-	hypothetical protein
999	 27.36	-2	1032230..1032781	-	183	22537184	-	SAG1024	-	putative lipoprotein
1000	 30.44	-1	1032786..1033235	-	149	22537185	-	SAG1025	-	hypothetical protein
1001	 27.06	-2	1035253..1035507	-	84	22537186	-	SAG1027	-	hypothetical protein
1002	 21.15	-2	1035528..1036118	-	196	22537187	-	SAG1028	-	hypothetical protein
1003	 38.24	0	1036132..1036437	-	101	22537188	-	SAG1029	-	hypothetical protein
1004	 34.32	0	1036566..1037480	-	304	22537189	-	SAG1030	-	hypothetical protein
1005	 29.20	-1	1037483..1037845	-	120	22537190	-	SAG1031	-	hypothetical protein
1006	 40.31	+1	1037950..1038207	-	85	22537191	-	SAG1032	-	hypothetical protein
1007	 39.80	+1	1038221..1042150	-	1309	22537192	-	SAG1033	-	FtsK/SpoIIIE family protein
1008	 30.36	-1	1042461..1042628	-	55	22537193	-	SAG1034	-	hypothetical protein
1009	 33.02	0	1042635..1043909	-	424	22537194	-	SAG1035	-	hypothetical protein
1010	 32.10	0	1043909..1044151	-	80	22537195	-	SAG1036	-	hypothetical protein
1011	 27.64	-2	1044135..1044608	-	157	22537196	-	SAG1037	-	hypothetical protein
1012	 33.20	0	1044617..1047628	-	1003	22537197	-	SAG1038	-	phage infection protein, putative
1013	 34.36	0	1047710..1048000	-	96	22537198	-	SAG1039	-	hypothetical protein
1014	 32.69	0	1048117..1048899	-	260	22537199	-	SAG1040	-	hypothetical protein
1015	 30.25	-1	1048896..1049219	-	107	22537200	-	SAG1041	-	hypothetical protein
1016	 36.66	0	1049346..1052528	-	1060	22537201	carB	SAG1042	-	carbamoyl phosphate synthase large subunit
1017	 35.56	0	1052559..1053635	-	358	22537202	carA-1	SAG1043	-	carbamoyl phosphate synthase small subunit
1018	 35.06	0	1053649..1054572	-	307	22537203	pyrB	SAG1044	-	aspartate carbamoyltransferase catalytic subunit
1019	 37.59	0	1054737..1056029	-	430	22537204	pyrC	SAG1045	-	dihydroorotase
1020	 38.89	0	1056041..1056670	-	209	22537205	pyrE	SAG1046	-	orotate phosphoribosyltransferase
1021	 36.89	0	1056683..1057384	-	233	22537206	pyrF	SAG1047	-	orotidine 5'-phosphate decarboxylase
1022	 35.93	0	1057597..1058829	-	410	22537207	-	SAG1048	-	hypothetical protein
1023	 35.54	0	1058869..1060410	-	513	22537208	-	SAG1049	-	ABC transporter, ATP-binding protein
1024	 37.98	0	1061049..1062125	-	358	22537209	asd	SAG1051	-	aspartate-semialdehyde dehydrogenase
1025	 27.78	-2	1062335..1062478	-	47	22537210	-	SAG1052	-	cell wall surface anchor family protein, putative
1026	 30.11	-1	1063089..1063181	+	30	22537211	-	SAG1053	-	hypothetical protein
1027	 33.71	0	1063395..1064990	-	531	22537212	cls	SAG1054	-	cardiolipin synthetase
1028	 37.58	0	1065109..1066779	-	556	22537213	fhs	SAG1055	-	formate--tetrahydrofolate ligase
1029	 34.12	0	1066868..1067887	-	339	22537214	lplA-2	SAG1056	-	lipoate-protein ligase A
1030	 35.04	0	1067914..1068792	-	292	22537215	-	SAG1057	-	hypothetical protein
1031	 35.16	0	1068761..1069579	-	272	22537216	-	SAG1058	-	hypothetical protein
1032	 31.83	0	1069572..1069904	-	110	22537217	-	SAG1059	-	glycine cleavage system H protein, putative
1033	 36.27	0	1069933..1070919	-	328	22537218	-	SAG1060	-	luciferase family protein
1034	 37.58	0	1070916..1072115	-	399	22537219	-	SAG1061	-	oxidoreductase, FMN-binding
1035	 35.45	0	1072108..1072956	-	282	22537220	-	SAG1062	-	hypothetical protein
1036	 33.62	0	1073098..1073784	+	228	22537221	-	SAG1063	-	phosphopantothenate--cysteine ligase
1037	 36.83	0	1073777..1074319	+	180	22537222	-	SAG1064	-	phosphopantothenoylcysteine decarboxylase
1038	 34.03	0	1074365..1074937	+	190	22537223	-	SAG1065	-	hypothetical protein
1039	 37.99	0	1075047..1076765	+	572	22537224	pgm	SAG1066	-	phosphoglucomutase
1040	 38.18	0	1076837..1077373	+	178	22537225	-	SAG1067	-	IS861, transposase OrfA
1041	 41.97	+1	1077349..1078182	+	277	22537226	-	SAG1068	-	IS861, transposase OrfB
1042	 29.80	-1	1078264..1078461	-	65	22537227	-	SAG1069	-	hypothetical protein
1043	 34.89	0	1078475..1080208	-	577	22537228	-	SAG1070	-	ABC transporter, ATP-binding/permease protein
1044	 33.74	0	1080209..1081930	-	573	22537229	-	SAG1071	-	ABC transporter, ATP-binding/permease protein
1045	 34.00	0	1081942..1082544	-	200	22537230	-	SAG1072	-	hypothetical protein
1046	 32.00	0	1082546..1083523	-	325	22537231	-	SAG1073	-	hypothetical protein
1047	 37.31	0	1083528..1084784	-	418	22537232	glyA	SAG1074	-	serine hydroxymethyltransferase
1048	 36.41	0	1084876..1085427	-	183	22537233	-	SAG1075	-	Sua5/YciO/YrdC/YwlC family protein
1049	 33.09	0	1085465..1086295	-	276	22537234	-	SAG1076	-	HemK family modification methylase
1050	 37.13	0	1086295..1087374	-	359	22537235	prfA	SAG1077	-	peptide chain release factor 1
1051	 33.33	0	1087409..1087978	-	189	22537236	tdk	SAG1078	-	thymidine kinase
1052	 35.52	0	1088116..1088298	+	60	22537237	xylM	SAG1079	-	4-oxalocrotonate tautomerase
1053	 27.78	-2	1088274..1088417	-	47	22537238	-	SAG1080	-	hypothetical protein
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.