IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
933	 75.56	+1	1321611..1322903	+	430	162449202	-	sce0932	-	two-component sensor histidine kinase
934	 72.66	0	1323113..1324864	+	583	162449203	-	sce0933	-	protein kinase
935	 65.58	-1	1325337..1327826	+	829	162449204	-	sce0934	-	membrane-bound proton-translocating pyrophosphatase
936	 66.13	-1	1327965..1328150	-	61	162449205	-	sce0935	-	hypothetical protein
937	 72.57	0	1328428..1330902	+	824	162449206	-	sce0936	-	hypothetical protein
938	 76.65	+1	1330911..1332563	+	550	162449207	-	sce0937	-	hypothetical protein
939	 72.05	0	1332615..1333004	-	129	162449208	panD	sce0938	-	hypothetical protein
940	 77.66	+1	1333147..1334292	-	381	162449209	-	sce0939	-	hypothetical protein
941	 75.71	+1	1334292..1334468	-	58	162449210	-	sce0940	-	hypothetical protein
942	 73.44	0	1334683..1335759	-	358	162449211	-	sce0941	-	calcineurin-like phosphoesterase family protein
943	 70.15	0	1335852..1336397	-	181	162449212	-	sce0942	-	hypothetical protein
944	 74.17	0	1336581..1337660	-	359	162449213	-	sce0943	-	putative dipeptidase
945	 72.65	0	1337665..1339002	-	445	162449214	-	sce0944	-	protein kinase
946	 77.37	+1	1339086..1341683	-	865	162449215	mltE	sce0945	-	soluble lytic murein transglycosylase
947	 68.41	0	1341825..1342226	-	133	162449216	-	sce0946	-	hypothetical protein
948	 70.24	0	1342586..1344040	-	484	162449217	-	sce0947	-	two-component histidine kinase
949	 65.81	-1	1344275..1344739	-	154	162449218	-	sce0948	-	hypothetical protein
950	 72.44	0	1344913..1346004	-	363	162449219	-	sce0949	-	hypothetical protein
951	 73.84	0	1346209..1348398	+	729	162449220	-	sce0950	-	hypothetical protein
952	 70.66	0	1348395..1350422	+	675	162449221	-	sce0951	-	hypothetical protein
953	 66.14	-1	1350453..1351022	-	189	162449222	-	sce0952	-	hypothetical protein
954	 64.18	-1	1351019..1352305	-	428	162449223	-	sce0953	-	putative ATPase
955	 74.61	0	1352472..1353377	-	301	162449224	-	sce0954	-	LysR family transcriptional regulator
956	 72.93	0	1353521..1354222	+	233	162449225	-	sce0955	-	hypothetical protein
957	 68.28	0	1354395..1354952	+	185	162449226	-	sce0956	-	hypothetical protein
958	 65.89	-1	1354993..1355505	-	170	162449227	-	sce0957	-	hypothetical protein
959	 70.52	0	1355720..1358860	-	1046	162449228	-	sce0958	-	hypothetical protein
960	 72.03	0	1358932..1359993	+	353	162449229	-	sce0959	-	putative lipid kinase
961	 71.52	0	1360217..1360855	+	212	162449230	-	sce0960	-	hypothetical protein
962	 76.80	+1	1360999..1362162	+	387	162449231	sdeB	sce0961	-	putative chlorohydrolase
963	 70.34	0	1362302..1364260	+	652	162449232	-	sce0962	-	two-component sensor histidine kinase
964	 77.50	+1	1364285..1365115	-	276	162449233	-	sce0963	-	hypothetical protein
965	 72.60	0	1365112..1366662	-	516	162449234	-	sce0964	-	hypothetical protein
966	 64.27	-1	1366981..1367982	-	333	162449235	-	sce0965	-	glycosy hydrolase family protein
967	 69.24	0	1368462..1370096	+	544	162449236	-	sce0966	-	hypothetical protein
968	 66.67	-1	1370158..1371369	-	403	162449237	-	sce0967	-	hypothetical protein
969	 66.75	-1	1371527..1372774	-	415	162449238	galM2	sce0968	-	aldose 1-epimerase
970	 68.02	0	1373124..1374827	-	567	162449239	-	sce0969	-	hypothetical protein
971	 71.23	0	1375018..1375719	-	233	162449240	-	sce0970	-	hypothetical protein
972	 78.58	+1	1377021..1377935	-	304	162449241	-	sce0971	-	hypothetical protein
973	 75.18	+1	1377908..1378882	-	324	162449242	-	sce0972	-	hypothetical protein
974	 70.91	0	1379420..1379749	+	109	162449243	-	sce0973	-	hypothetical protein
975	 71.82	0	1380014..1380343	+	109	162449244	-	sce0974	-	hypothetical protein
976	 69.41	0	1380385..1380603	-	72	162449245	-	sce0975	-	hypothetical protein
977	 72.73	0	1380640..1381233	-	197	162449246	-	sce0976	-	hypothetical protein
978	 73.30	0	1381769..1383925	-	718	162449247	-	sce0977	-	hypothetical protein
979	 73.21	0	1384150..1384989	-	279	162449248	-	sce0978	-	putative oxidoreductase
980	 67.76	0	1385371..1385736	+	121	162449249	-	sce0979	-	metallothiol transferase fosB
981	 70.62	0	1385762..1386721	-	319	162449250	-	sce0980	-	putative transcriptional regulator
982	 71.83	0	1386927..1388108	+	393	162449251	-	sce0981	-	putative oxidoreductase
983	 69.28	0	1388220..1388717	+	165	162449252	-	sce0982	-	hypothetical protein
984	 67.19	0	1388931..1389887	-	318	162449253	-	sce0983	-	hypothetical protein
985	 73.95	0	1389973..1390974	-	333	162449254	-	sce0984	-	hypothetical protein
986	 69.27	0	1391022..1391597	+	191	162449255	-	sce0985	-	exonuclease
987	 72.77	0	1391599..1392549	-	316	162449256	-	sce0986	-	hypothetical protein
988	 69.01	0	1393204..1395465	+	753	162449257	-	sce0987	-	hypothetical protein
989	 63.19	-1	1395791..1396537	-	248	162449258	-	sce0988	-	putative secreted protein
990	 68.38	0	1396603..1396953	+	116	162449259	-	sce0989	-	hypothetical protein
991	 70.75	0	1396963..1397280	-	105	162449260	-	sce0990	-	hypothetical protein
992	 70.77	0	1397270..1398001	-	243	162449261	-	sce0991	-	dehydrogenase with different specifities
993	 74.89	0	1398110..1399045	+	311	162449262	-	sce0992	-	LysR family transcriptional regulator
994	 70.39	0	1399667..1401385	+	572	162449263	-	sce0993	-	hypothetical protein
995	 67.17	0	1401391..1402782	+	463	162449264	-	sce0994	-	hypothetical protein
996	 74.91	0	1402919..1406434	-	1171	162449265	-	sce0995	-	hypothetical protein
997	 67.89	0	1406579..1409110	-	843	162449266	aguA	sce0996	-	hypothetical protein
998	 74.56	0	1409470..1410483	+	337	162449267	-	sce0997	-	putative SAM-dependent methyltransferse
999	 68.66	0	1410899..1412701	+	600	162449268	-	sce0998	-	hypothetical protein
1000	 63.88	-1	1412962..1415619	+	885	162449269	-	sce0999	-	hypothetical protein
1001	 68.87	0	1415654..1415971	-	105	162449270	-	sce1000	-	hypothetical protein
1002	 71.33	0	1416505..1418757	+	750	162449271	-	sce1001	-	hypothetical protein
1003	 72.83	0	1418783..1419982	+	399	162449272	-	sce1002	-	putative glycosyl hydrolase
1004	 73.23	0	1420049..1420993	+	314	162449273	-	sce1003	-	ABC transporter, ATP-binding protein
1005	 73.17	0	1420990..1422111	+	373	162449274	-	sce1004	-	hypothetical protein
1006	 71.88	0	1422108..1423334	+	408	162449275	-	sce1005	-	macrolide ABC transporter ATPase
1007	 74.04	0	1423277..1424578	+	433	162449276	-	sce1006	-	hypothetical protein
1008	 63.38	-1	1424618..1425013	-	131	162449277	-	sce1007	-	photoactive yellow protein (PYP)
1009	 71.30	0	1425313..1426932	+	539	162449278	-	sce1008	-	putative transport protein
1010	 71.17	0	1427094..1428380	-	428	162449279	-	sce1009	-	major facilitator superfamily permease
1011	 69.92	0	1428704..1429195	-	163	162449280	-	sce1010	-	putative acetyltransferase protein
1012	 73.36	0	1429241..1429927	+	228	162449281	-	sce1011	-	hypothetical protein
1013	 69.56	0	1430127..1430921	+	264	162449282	-	sce1012	-	putative hydrolase
1014	 68.22	0	1430947..1432746	-	599	162449283	-	sce1013	-	protein kinase
1015	 69.83	0	1432989..1433747	+	252	162449284	-	sce1014	-	putative secreted protein
1016	 70.86	0	1433824..1435398	-	524	162449285	-	sce1015	-	hypothetical protein
1017	 71.71	0	1435410..1437194	-	594	162449286	-	sce1016	-	hypothetical protein
1018	 67.98	0	1437445..1437978	+	177	162449287	-	sce1017	-	hypothetical protein
1019	 72.19	0	1438601..1439506	-	301	162449289	-	sce1018	-	hypothetical protein
1020	 75.46	+1	1439405..1440859	+	484	162449288	-	sce1019	-	protein kinase
1021	 73.02	0	1440856..1442082	+	408	162449290	-	sce1020	-	putative nucleotide-binding protein
1022	 70.58	0	1442340..1443719	-	459	162449291	-	sce1021	-	hypothetical protein
1023	 72.64	0	1443719..1445443	-	574	162449292	-	sce1022	-	hypothetical protein
1024	 73.38	0	1445811..1446659	+	282	162449293	-	sce1023	-	hypothetical protein
1025	 74.67	0	1446649..1448685	+	678	162449294	-	sce1024	-	exported nucleotide-binding protein
1026	 73.04	0	1448968..1450284	+	438	162449295	-	sce1025	-	glycosyltransferase
1027	 70.97	0	1450313..1451821	-	502	162449296	-	sce1026	-	protein kinase
1028	 77.31	+1	1452374..1453369	+	331	162449297	-	sce1027	-	glycosyltransferase
1029	 71.38	0	1453629..1455218	+	529	162449298	-	sce1028	-	glycosyltransferase
1030	 71.22	0	1455297..1457930	+	877	162449299	-	sce1029	-	RND efflux transporter
1031	 77.95	+1	1457927..1459105	+	392	162449300	-	sce1030	-	glycosyltransferase
1032	 76.59	+1	1459110..1460459	+	449	162449301	-	sce1031	-	hypothetical protein
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.