IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
902	 70.87	0	1280278..1280634	+	118	162449171	-	sce0901	-	hypothetical protein
903	 67.75	0	1280846..1282141	+	431	162449172	celG	sce0902	-	cellulase
904	 67.00	0	1282632..1284428	+	598	162449173	-	sce0903	-	hypothetical protein
905	 69.85	0	1284606..1286114	+	502	162449174	-	sce0904	-	hypothetical protein
906	 65.15	-1	1286157..1286879	-	240	162449175	-	sce0905	-	putative peroxiredoxin 2 family protein/glutaredoxin
907	 75.84	+1	1287239..1288426	-	395	162449176	-	sce0906	-	methylated-DNA--protein-cysteine methyltransferase
908	 74.97	0	1288473..1289315	-	280	162449177	-	sce0907	-	AraC family transcriptional regulator
909	 73.58	0	1289436..1290548	-	370	162449178	-	sce0908	-	hypothetical protein
910	 74.23	0	1290773..1291618	-	281	162449179	-	sce0909	-	nucleotide-binding enzyme
911	 79.41	+2	1291615..1292085	-	156	162449180	-	sce0910	-	hypothetical protein
912	 74.90	0	1292057..1292554	-	165	162449181	-	sce0911	-	hypothetical protein
913	 66.67	-1	1292692..1293882	-	396	162449182	-	sce0912	-	hypothetical protein
914	 65.56	-1	1293879..1294238	-	119	162449184	-	sce0913	-	hypothetical protein
915	 68.59	0	1294215..1294370	+	51	162449183	-	sce0914	-	hypothetical protein
916	 61.26	-2	1294407..1294517	+	36	162449185	-	sce0915	-	hypothetical protein
917	 73.50	0	1294536..1295135	+	199	162449186	-	sce0916	-	hypothetical protein
918	 64.53	-1	1295369..1296118	-	249	162449187	-	sce0917	-	hypothetical protein
919	 67.56	0	1296500..1297510	-	336	162449188	-	sce0918	-	hypothetical protein
920	 66.92	0	1297507..1304685	-	2392	162449189	-	sce0919	-	hypothetical protein
921	 69.25	0	1305035..1305925	+	296	162449190	-	sce0920	-	hypothetical protein
922	 66.90	-1	1306224..1308788	-	854	162449191	-	sce0921	-	protein kinase
923	 67.45	0	1308818..1309327	+	169	162449192	-	sce0922	-	hypothetical protein
924	 71.60	0	1309363..1310436	-	357	162449194	had	sce0923	-	haloacetate dehalogenase
925	 77.10	+1	1310389..1311327	+	312	162449193	-	sce0924	-	LysR family transcriptional regulator
926	 71.11	0	1311315..1311809	-	164	162449195	-	sce0925	-	hypothetical protein
927	 69.21	0	1311887..1313773	-	628	162449196	-	sce0926	-	GTP-binding protein
928	 72.07	0	1314370..1316571	+	733	162449197	-	sce0927	-	TonB-dependent receptor, putative
929	 68.86	0	1316585..1317085	-	166	162449199	-	sce0928	-	hypothetical protein
930	 69.57	0	1317084..1319423	+	779	162449198	-	sce0929	-	two-component hybrid sensor and regulator
931	 73.56	0	1319594..1320289	+	231	162449200	dnaZ	sce0930	-	DNA-directed RNA polymerase
932	 76.65	+1	1320380..1321921	+	513	162449201	-	sce0931	-	hypothetical protein
933	 75.56	+1	1321611..1322903	+	430	162449202	-	sce0932	-	two-component sensor histidine kinase
934	 72.66	0	1323113..1324864	+	583	162449203	-	sce0933	-	protein kinase
935	 65.58	-1	1325337..1327826	+	829	162449204	-	sce0934	-	membrane-bound proton-translocating pyrophosphatase
936	 66.13	-1	1327965..1328150	-	61	162449205	-	sce0935	-	hypothetical protein
937	 72.57	0	1328428..1330902	+	824	162449206	-	sce0936	-	hypothetical protein
938	 76.65	+1	1330911..1332563	+	550	162449207	-	sce0937	-	hypothetical protein
939	 72.05	0	1332615..1333004	-	129	162449208	panD	sce0938	-	hypothetical protein
940	 77.66	+1	1333147..1334292	-	381	162449209	-	sce0939	-	hypothetical protein
941	 75.71	+1	1334292..1334468	-	58	162449210	-	sce0940	-	hypothetical protein
942	 73.44	0	1334683..1335759	-	358	162449211	-	sce0941	-	calcineurin-like phosphoesterase family protein
943	 70.15	0	1335852..1336397	-	181	162449212	-	sce0942	-	hypothetical protein
944	 74.17	0	1336581..1337660	-	359	162449213	-	sce0943	-	putative dipeptidase
945	 72.65	0	1337665..1339002	-	445	162449214	-	sce0944	-	protein kinase
946	 77.37	+1	1339086..1341683	-	865	162449215	mltE	sce0945	-	soluble lytic murein transglycosylase
947	 68.41	0	1341825..1342226	-	133	162449216	-	sce0946	-	hypothetical protein
948	 70.24	0	1342586..1344040	-	484	162449217	-	sce0947	-	two-component histidine kinase
949	 65.81	-1	1344275..1344739	-	154	162449218	-	sce0948	-	hypothetical protein
950	 72.44	0	1344913..1346004	-	363	162449219	-	sce0949	-	hypothetical protein
951	 73.84	0	1346209..1348398	+	729	162449220	-	sce0950	-	hypothetical protein
952	 70.66	0	1348395..1350422	+	675	162449221	-	sce0951	-	hypothetical protein
953	 66.14	-1	1350453..1351022	-	189	162449222	-	sce0952	-	hypothetical protein
954	 64.18	-1	1351019..1352305	-	428	162449223	-	sce0953	-	putative ATPase
955	 74.61	0	1352472..1353377	-	301	162449224	-	sce0954	-	LysR family transcriptional regulator
956	 72.93	0	1353521..1354222	+	233	162449225	-	sce0955	-	hypothetical protein
957	 68.28	0	1354395..1354952	+	185	162449226	-	sce0956	-	hypothetical protein
958	 65.89	-1	1354993..1355505	-	170	162449227	-	sce0957	-	hypothetical protein
959	 70.52	0	1355720..1358860	-	1046	162449228	-	sce0958	-	hypothetical protein
960	 72.03	0	1358932..1359993	+	353	162449229	-	sce0959	-	putative lipid kinase
961	 71.52	0	1360217..1360855	+	212	162449230	-	sce0960	-	hypothetical protein
962	 76.80	+1	1360999..1362162	+	387	162449231	sdeB	sce0961	-	putative chlorohydrolase
963	 70.34	0	1362302..1364260	+	652	162449232	-	sce0962	-	two-component sensor histidine kinase
964	 77.50	+1	1364285..1365115	-	276	162449233	-	sce0963	-	hypothetical protein
965	 72.60	0	1365112..1366662	-	516	162449234	-	sce0964	-	hypothetical protein
966	 64.27	-1	1366981..1367982	-	333	162449235	-	sce0965	-	glycosy hydrolase family protein
967	 69.24	0	1368462..1370096	+	544	162449236	-	sce0966	-	hypothetical protein
968	 66.67	-1	1370158..1371369	-	403	162449237	-	sce0967	-	hypothetical protein
969	 66.75	-1	1371527..1372774	-	415	162449238	galM2	sce0968	-	aldose 1-epimerase
970	 68.02	0	1373124..1374827	-	567	162449239	-	sce0969	-	hypothetical protein
971	 71.23	0	1375018..1375719	-	233	162449240	-	sce0970	-	hypothetical protein
972	 78.58	+1	1377021..1377935	-	304	162449241	-	sce0971	-	hypothetical protein
973	 75.18	+1	1377908..1378882	-	324	162449242	-	sce0972	-	hypothetical protein
974	 70.91	0	1379420..1379749	+	109	162449243	-	sce0973	-	hypothetical protein
975	 71.82	0	1380014..1380343	+	109	162449244	-	sce0974	-	hypothetical protein
976	 69.41	0	1380385..1380603	-	72	162449245	-	sce0975	-	hypothetical protein
977	 72.73	0	1380640..1381233	-	197	162449246	-	sce0976	-	hypothetical protein
978	 73.30	0	1381769..1383925	-	718	162449247	-	sce0977	-	hypothetical protein
979	 73.21	0	1384150..1384989	-	279	162449248	-	sce0978	-	putative oxidoreductase
980	 67.76	0	1385371..1385736	+	121	162449249	-	sce0979	-	metallothiol transferase fosB
981	 70.62	0	1385762..1386721	-	319	162449250	-	sce0980	-	putative transcriptional regulator
982	 71.83	0	1386927..1388108	+	393	162449251	-	sce0981	-	putative oxidoreductase
983	 69.28	0	1388220..1388717	+	165	162449252	-	sce0982	-	hypothetical protein
984	 67.19	0	1388931..1389887	-	318	162449253	-	sce0983	-	hypothetical protein
985	 73.95	0	1389973..1390974	-	333	162449254	-	sce0984	-	hypothetical protein
986	 69.27	0	1391022..1391597	+	191	162449255	-	sce0985	-	exonuclease
987	 72.77	0	1391599..1392549	-	316	162449256	-	sce0986	-	hypothetical protein
988	 69.01	0	1393204..1395465	+	753	162449257	-	sce0987	-	hypothetical protein
989	 63.19	-1	1395791..1396537	-	248	162449258	-	sce0988	-	putative secreted protein
990	 68.38	0	1396603..1396953	+	116	162449259	-	sce0989	-	hypothetical protein
991	 70.75	0	1396963..1397280	-	105	162449260	-	sce0990	-	hypothetical protein
992	 70.77	0	1397270..1398001	-	243	162449261	-	sce0991	-	dehydrogenase with different specifities
993	 74.89	0	1398110..1399045	+	311	162449262	-	sce0992	-	LysR family transcriptional regulator
994	 70.39	0	1399667..1401385	+	572	162449263	-	sce0993	-	hypothetical protein
995	 67.17	0	1401391..1402782	+	463	162449264	-	sce0994	-	hypothetical protein
996	 74.91	0	1402919..1406434	-	1171	162449265	-	sce0995	-	hypothetical protein
997	 67.89	0	1406579..1409110	-	843	162449266	aguA	sce0996	-	hypothetical protein
998	 74.56	0	1409470..1410483	+	337	162449267	-	sce0997	-	putative SAM-dependent methyltransferse
999	 68.66	0	1410899..1412701	+	600	162449268	-	sce0998	-	hypothetical protein
1000	 63.88	-1	1412962..1415619	+	885	162449269	-	sce0999	-	hypothetical protein
1001	 68.87	0	1415654..1415971	-	105	162449270	-	sce1000	-	hypothetical protein
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.