IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
672	 72.19	0	955448..956425	-	325	162448941	-	sce0671	-	oxidoreductase/voltage-gated potassium channel beta-1 subunit (K+ channel beta-1 subunit) (Kv-beta-1)
673	 74.92	0	956751..957356	+	201	162448942	-	sce0672	-	hypothetical protein
674	 66.21	-1	957450..958547	+	365	162448943	-	sce0673	-	pectinacetylesterase, putative
675	 66.96	0	958796..959488	+	230	162448944	ppgK	sce0674	-	polyphosphate-glucose phosphotransferase
676	 69.61	0	959757..961046	+	429	162448945	-	sce0675	-	cytochrome P450 CYP267A1
677	 72.04	0	961287..962756	-	489	162448946	astD	sce0676	-	succinylglutamic semialdehyde dehydrogenase
678	 72.09	0	963273..964838	+	521	162448947	-	sce0677	-	hypothetical protein
679	 66.78	-1	964851..965726	-	291	162448948	-	sce0678	-	hypothetical protein
680	 74.13	0	966002..966202	-	66	162448949	-	sce0679	-	none
681	 77.83	+1	966344..967687	-	447	162448950	-	sce0680	-	hypothetical protein
682	 75.27	+1	967684..968241	-	185	162448951	-	sce0681	-	ECF family RNA polymerase sigma factor
683	 76.76	+1	968480..971065	+	861	162448952	-	sce0682	-	protein kinase
684	 65.75	-1	971157..971813	-	218	162448953	-	sce0683	-	hypothetical protein
685	 66.84	-1	971930..972496	-	188	162448954	-	sce0684	-	hypothetical protein
686	 70.10	0	972863..973387	+	174	162448955	-	sce0685	-	hypothetical protein
687	 76.47	+1	973410..974888	-	492	162448956	-	sce0686	-	sigma-54 dependent transcriptional regulator
688	 74.61	0	974945..978859	-	1304	162448957	-	sce0687	-	protein kinase
689	 73.05	0	979641..983165	-	1174	162448958	-	sce0688	-	endonuclease/exonuclease/phosphatase family protein
690	 67.34	0	983613..985106	+	497	162448959	-	sce0689	-	hypothetical protein
691	 71.45	0	985125..985961	+	278	162448960	-	sce0690	-	Fatty acid desaturase
692	 68.97	0	985963..986397	+	144	162448961	-	sce0691	-	hypothetical protein
693	 71.93	0	986477..986932	-	151	162448962	-	sce0692	-	hypothetical protein
694	 71.96	0	987014..988297	-	427	162448963	bioA	sce0693	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
695	 69.61	0	988602..989450	+	282	162448964	-	sce0694	-	hydrolase, alpha/beta fold family protein
696	 72.13	0	989533..990282	+	249	162448965	-	sce0695	-	ECF family RNA polymerase sigma factor
697	 67.49	0	990289..990531	+	80	162448966	-	sce0696	-	hypothetical protein
698	 65.78	-1	990766..991218	-	150	162448967	-	sce0697	-	hypothetical protein
699	 62.18	-2	992108..992419	-	103	162448968	-	sce0698	-	hypothetical protein
700	 66.57	-1	993061..996048	+	995	162448969	-	sce0699	-	hypothetical protein
701	 76.96	+1	997413..999287	-	624	162448970	deaD1	sce0700	-	ATP-independent RNA helicase
702	 77.18	+1	999385..999831	-	148	162448971	-	sce0701	-	hypothetical protein
703	 71.69	0	1000200..1001771	+	523	162448972	-	sce0702	-	dipeptidase
704	 75.55	+1	1001825..1004098	+	757	162448973	-	sce0703	-	hypothetical protein
705	 71.05	0	1004212..1004850	+	212	162448974	marC	sce0704	-	MarC family integral membrane protein
706	 70.17	0	1004888..1005544	-	218	162448975	-	sce0705	-	anti-anti sigma factor protein
707	 62.75	-2	1005534..1005941	-	135	162448976	-	sce0706	-	hypothetical protein
708	 76.79	+1	1006180..1007088	-	302	162448977	-	sce0707	-	hypothetical protein
709	 69.96	0	1007085..1007540	-	151	162448978	-	sce0708	-	phenazine biosynthesis protein
710	 79.62	+2	1007695..1008636	+	313	162448979	-	sce0709	-	AraC family transcriptional regulator
711	 69.78	0	1008770..1010470	+	566	162448980	-	sce0710	-	hypothetical protein
712	 70.15	0	1010565..1011167	+	200	162448981	-	sce0711	-	hypothetical protein
713	 67.44	0	1011379..1012419	+	346	162448982	-	sce0712	-	ArsR family transcriptional regulator
714	 71.53	0	1012567..1016490	+	1307	162448983	-	sce0713	-	two-component hybrid sensor and regulator
715	 67.48	0	1016597..1017331	+	244	162448984	-	sce0714	-	hypothetical protein
716	 70.71	0	1017555..1018592	+	345	162448985	-	sce0715	-	oxidoreductase
717	 72.58	0	1018730..1020031	+	433	162448986	-	sce0716	-	hypothetical protein
718	 64.78	-1	1020086..1020562	-	158	162448987	-	sce0717	-	hypothetical protein
719	 72.26	0	1020859..1021251	+	130	162448988	-	sce0718	-	hypothetical protein
720	 52.63	-2	1021395..1021508	-	37	162448989	-	sce0719	-	hypothetical protein
721	 67.94	0	1021647..1022828	-	393	162448990	-	sce0720	-	hypothetical protein
722	 70.94	0	1023378..1023728	-	116	162448991	-	sce0721	-	hypothetical protein
723	 75.31	+1	1023852..1024175	-	107	162448992	-	sce0722	-	hypothetical protein
724	 73.26	0	1024469..1026379	+	636	162448993	-	sce0723	-	two-component hybrid sensor and regulator
725	 72.76	0	1026484..1027041	-	185	162448994	-	sce0724	-	hypothetical protein
726	 64.69	-1	1027441..1027947	+	168	162448995	-	sce0725	-	hypothetical protein
727	 70.61	0	1028331..1028837	-	168	162448996	-	sce0726	-	hypothetical protein
728	 56.03	-2	1028846..1028986	-	46	162448997	-	sce0727	-	hypothetical protein
729	 63.10	-1	1029053..1029724	-	223	162448998	-	sce0728	-	hypothetical protein
730	 66.36	-1	1030462..1031781	+	439	162448999	-	sce0729	-	reverse transcriptase/maturase family protein
731	 67.71	0	1031887..1033032	+	381	162449000	-	sce0730	-	hypothetical protein
732	 73.24	0	1033082..1033933	-	283	162449001	-	sce0731	-	hypothetical protein
733	 77.49	+1	1033984..1034898	+	304	162449002	-	sce0732	-	AraC family transcriptional regulator
734	 75.70	+1	1034968..1035432	-	154	162449003	-	sce0733	-	hypothetical protein
735	 66.73	-1	1035422..1037128	-	568	162449004	-	sce0734	-	hypothetical protein
736	 68.90	0	1037450..1039195	+	581	162449005	-	sce0735	-	hypothetical protein
737	 66.96	0	1039192..1040556	+	454	162449006	-	sce0736	-	signal peptide
738	 69.90	0	1040791..1041564	+	257	162449007	-	sce0737	-	anti-anti sigma factor protein
739	 70.53	0	1041536..1042234	+	232	162449008	-	sce0738	-	cupin-like protein
740	 68.13	0	1042470..1043360	-	296	162449009	-	sce0739	-	hypothetical protein
741	 70.06	0	1043552..1045288	+	578	162449010	-	sce0740	-	sulfate adenylyltransferase
742	 65.22	-1	1045276..1046244	-	322	162449011	-	sce0741	-	hypothetical protein
743	 70.74	0	1046315..1046707	-	130	162449012	-	sce0742	-	hypothetical protein
744	 66.67	-1	1047370..1048236	+	288	162449013	-	sce0743	-	hypothetical protein
745	 73.43	0	1048306..1049163	+	285	162449014	-	sce0744	-	hypothetical protein
746	 70.18	0	1049246..1050328	-	360	162449015	-	sce0745	-	putative secreted protein
747	 75.66	+1	1050789..1052111	+	440	162449016	-	sce0746	-	hypothetical protein
748	 71.30	0	1052063..1052710	+	215	162449017	-	sce0747	-	hypothetical protein
749	 68.08	0	1053436..1054851	+	471	162449018	-	sce0748	-	Ricin precursor and Poly(3-hydroxybutyrate) depolymerase fusion
750	 63.84	-1	1055386..1055703	+	105	162449019	-	sce0749	-	putative secreted protein
751	 55.97	-2	1056112..1056429	+	105	162449020	-	sce0750	-	hypothetical protein
752	 72.18	0	1056795..1057502	+	235	162449021	-	sce0751	-	GntR family transcriptional regulator
753	 73.29	0	1057499..1058857	+	452	162449022	-	sce0752	-	putative glycolate oxidase
754	 63.36	-1	1058940..1059635	-	231	162449023	-	sce0753	-	hypothetical protein
755	 74.26	0	1060040..1061119	+	359	162449024	-	sce0754	-	ABC transporter, ATP-binding protein
756	 72.26	0	1061116..1061955	+	279	162449025	-	sce0755	-	hypothetical protein
757	 69.20	0	1062036..1063178	+	380	162449026	-	sce0756	-	hypothetical protein
758	 64.08	-1	1063255..1063641	-	128	162449027	-	sce0757	-	hypothetical protein
759	 69.37	0	1063695..1064138	-	147	162449028	ptlR	sce0758	-	regulatory protein pocR
760	 68.71	0	1064208..1065725	-	505	162449029	-	sce0759	-	hypothetical protein
761	 70.83	0	1065804..1066139	-	111	162449031	-	sce0760	-	hypothetical protein
762	 69.44	0	1065811..1066062	+	83	162449030	-	sce0761	-	hypothetical protein
763	 70.40	0	1066453..1068705	+	750	162449032	-	sce0762	-	prolyl endopeptidase
764	 71.22	0	1068769..1070130	-	453	162449033	-	sce0763	-	putative exported peptidase / protease
765	 67.25	0	1070583..1071959	+	458	162449034	-	sce0764	-	putative sugar binding ABC transporter protein
766	 70.59	0	1072857..1072958	+	33	162449035	-	sce0765	-	hypothetical protein
767	 74.35	0	1073108..1074226	-	372	162449036	-	sce0766	-	anti-anti sigma factor protein
768	 70.50	0	1074404..1075291	+	295	162449037	-	sce0767	-	transglutaminase-like enzyme
769	 66.30	-1	1075346..1076716	-	456	162449038	-	sce0768	-	putative glucoamylase precursor (glucan 14-alpha-glucosidase) (14-alpha-D-glucan glucohydrolase)
770	 74.55	0	1077092..1078030	+	312	162449039	-	sce0769	-	LysR family transcriptional regulator
771	 72.34	0	1078128..1078550	+	140	162449040	-	sce0770	-	hypothetical protein
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.