IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
24	 73.30	0	34663..35823	-	386	162448293	-	sce0024	-	hypothetical protein
25	 72.94	0	36099..37007	+	302	162448294	-	sce0025	-	hypothetical protein
26	 75.32	+1	37138..38883	+	581	162448295	lnt	sce0026	-	hypothetical protein
27	 65.37	-1	38870..39178	-	102	162448296	-	sce0027	-	hypothetical protein
28	 70.13	0	39247..39852	-	201	162448297	-	sce0028	-	hypothetical protein
29	 66.05	-1	39860..40510	-	216	162448298	tal2	sce0029	-	hypothetical protein
30	 65.88	-1	40647..43682	-	1011	162448299	secA	sce0030	-	preprotein translocase SecA subunit
31	 72.14	0	44620..45240	+	206	162448300	-	sce0031	-	putative two component response regulator
32	 75.23	+1	45194..45940	-	248	162448301	-	sce0032	-	CRP family transcriptional regulator
33	 64.63	-1	46299..47819	+	506	162448302	rpoN	sce0033	-	RNA polymerase sigma-54 factor
34	 71.50	0	47882..48874	+	330	162448303	-	sce0034	-	hypothetical protein
35	 75.18	+1	48915..49913	+	332	162448304	-	sce0035	-	hypothetical protein
36	 70.15	0	49972..51234	-	420	162448305	fbp1	sce0036	-	fructose-2,6-bisphosphate 2-phosphatase
37	 75.89	+1	51244..52056	-	270	162448306	-	sce0037	-	hypothetical protein
38	 68.41	0	52143..53348	+	401	162448307	-	sce0038	-	protein kinase
39	 73.38	0	53766..56312	+	848	162448308	pbp1	sce0039	-	penicillin-binding protein
40	 74.89	0	56617..57321	-	234	162448309	-	sce0040	-	hypothetical protein
41	 75.69	+1	57451..58458	-	335	162448310	-	sce0041	-	hypothetical protein
42	 74.14	0	58445..59809	-	454	162448311	-	sce0042	-	protein kinase
43	 73.82	0	59978..60970	-	330	162448312	-	sce0043	-	hypothetical protein
44	 72.29	0	61113..62090	-	325	162448313	speB1	sce0044	-	agmatinase
45	 73.97	0	62099..62878	-	259	162448314	plsC1	sce0045	-	1-acylglycerol-3-phosphate O-acyltransferase
46	 67.91	0	62891..63451	-	186	162448315	-	sce0046	-	acetyltransferase
47	 71.97	0	63615..64595	-	326	162448316	-	sce0047	-	putative 3-oxoacyl-[acyl-carrier-protein] reductase
48	 71.92	0	64837..67065	-	742	162448317	-	sce0048	-	multifunctional fatty acid oxidation complex subunit alpha
49	 72.31	0	67062..68372	-	436	162448318	-	sce0049	-	3-ketoacyl-CoA thiolase
50	 61.84	-2	68841..69047	+	68	162448319	-	sce0050	-	hypothetical protein
51	 74.68	0	69241..71187	-	648	162448320	-	sce0051	-	hypothetical protein
52	 71.48	0	71337..72230	-	297	162448321	-	sce0052	-	hypothetical protein
53	 71.38	0	72275..73081	-	268	162448322	-	sce0053	-	hypothetical protein
54	 71.55	0	73189..74886	-	565	162448323	-	sce0054	-	hypothetical protein
55	 71.09	0	75096..76292	+	398	162448324	-	sce0055	-	hypothetical protein
56	 71.21	0	76330..79650	+	1106	162448325	-	sce0056	-	hypothetical protein
57	 71.54	0	79812..80447	-	211	162448326	-	sce0057	-	hypothetical protein
58	 66.52	-1	80931..82277	-	448	162448327	-	sce0058	-	hypothetical protein
59	 73.72	0	82601..83593	-	330	162448328	-	sce0059	-	hypothetical protein
60	 74.74	0	83602..85125	-	507	162448329	-	sce0060	-	protein kinase
61	 73.70	0	85404..86783	-	459	162448330	-	sce0061	-	putative cAMP-binding protein
62	 73.11	0	86883..88373	-	496	162448331	dlhH1	sce0062	-	putative carboxymethylenebutenolidase
63	 72.76	0	88685..89980	-	431	162448332	-	sce0063	-	putative transcriptional regulator
64	 65.30	-1	90285..91160	-	291	162448333	-	sce0064	-	hypothetical protein
65	 70.21	0	91201..92046	-	281	162448334	-	sce0065	-	hypothetical protein
66	 70.98	0	92301..93923	+	540	162448335	yhjG1	sce0066	-	pentachlorophenol monooxygenase
67	 70.75	0	93993..94628	+	211	162448336	-	sce0067	-	TetR family transcriptional regulator
68	 69.55	0	94679..95545	-	288	162448337	-	sce0068	-	chaperonin (heat shock protein 33)
69	 72.09	0	95736..99995	-	1419	162448338	sdr	sce0069	-	cell surface SD repeat-containing protein
70	 71.92	0	100009..101835	-	608	162448339	-	sce0070	-	outer membrane porin precursor
71	 63.07	-1	102182..102793	+	203	162448340	sodA	sce0071	-	hypothetical protein
72	 70.47	0	102798..103691	+	297	162448341	-	sce0072	-	acetyltransferase
73	 68.16	0	103737..105071	-	444	162448342	argB1	sce0073	-	acetylglutamate kinase
74	 66.87	-1	105077..106078	-	333	162448343	argF1	sce0074	-	N-acetylornithine carbamoyltransferase
75	 69.55	0	106568..106879	+	103	162448344	-	sce0075	-	hypothetical protein
76	 69.32	0	107087..107614	+	175	162448345	-	sce0076	-	hypothetical protein
77	 64.22	-1	107663..108070	+	135	162448346	-	sce0077	-	hypothetical protein
78	 75.80	+1	108007..111771	-	1254	162448347	-	sce0078	-	ATP-dependent deoxyribonuclease subunit A
79	 75.62	+1	112023..112982	+	319	162448348	chlG	sce0079	-	putative octaprenyltransferase
80	 71.84	0	112979..113713	+	244	162448349	hemH1	sce0080	-	ferrochelatase
81	 77.45	+1	113710..114627	+	305	162448350	-	sce0081	-	hypothetical protein
82	 72.71	0	114642..115352	+	236	162448351	-	sce0082	-	hypothetical protein
83	 61.63	-2	115431..117158	-	575	162448353	-	sce_pseudo_01	-	pseudogene
84	 70.35	0	117146..117607	+	153	162448352	-	sce0083	-	hypothetical protein
85	 73.49	0	117802..119442	-	546	162448354	-	sce0084	-	hypothetical protein
86	 70.39	0	120147..120764	-	205	162448355	leuD	sce0085	-	isopropylmalate isomerase small subunit
87	 68.44	0	120792..122201	-	469	162448356	leuC1	sce0086	-	isopropylmalate isomerase large subunit
88	 75.22	+1	122434..123333	+	299	162448357	-	sce0087	-	LysR family transcriptional regulator
89	 66.80	-1	123458..125002	-	514	162448358	guaB1	sce0088	-	inositol-5-monophosphate dehydrogenase
90	 69.07	0	125214..126254	-	346	162448359	-	sce0089	-	AraC family transcriptional regulator
91	 64.75	-1	126521..127459	+	312	162448360	-	sce0090	-	transposase
92	 70.05	0	127945..129066	-	373	162448361	-	sce0091	-	hypothetical protein
93	 63.98	-1	129269..129715	-	148	162448362	-	sce0092	-	hypothetical protein
94	 72.22	0	129992..130657	-	221	162448363	-	sce0093	-	hypothetical protein
95	 71.85	0	130728..131711	+	327	162448364	-	sce0094	-	hypothetical protein
96	 71.79	0	131794..132612	+	272	162448365	-	sce0095	-	hypothetical protein
97	 62.26	-2	132730..133206	+	158	162448366	-	sce0096	-	hypothetical protein
98	 67.94	0	133239..134099	-	286	162448367	-	sce0097	-	proline iminopeptidase
99	 73.19	0	134226..135038	-	270	162448368	-	sce0098	-	putative carboxymethylenebutenolidase
100	 66.67	-1	135035..135451	-	138	162448369	-	sce0099	-	PPE family protein
101	 73.47	0	135403..136254	-	283	162448370	-	sce0100	-	putative carboxymethylenebutenolidase
102	 70.63	0	136251..137234	-	327	162448371	tauD1	sce0101	-	putative taurine dioxygenase
103	 74.89	0	138053..138928	-	291	162448372	-	sce0102	-	hypothetical protein
104	 68.84	0	138959..139372	-	137	162448373	-	sce0103	-	hypothetical protein
105	 77.08	+1	139385..140143	-	252	162448374	-	sce0104	-	hypothetical protein
106	 79.37	+2	140188..142281	-	697	162448375	-	sce0105	-	hypothetical protein
107	 78.05	+1	142197..144533	-	778	162448376	-	sce0106	-	hypothetical protein
108	 72.69	0	144591..147296	-	901	162448377	-	sce0107	-	hypothetical protein
109	 71.94	0	147293..148753	-	486	162448378	-	sce0108	-	hypothetical protein
110	 75.19	+1	148916..150511	-	531	162448379	-	sce0109	-	hypothetical protein
111	 68.23	0	150812..151387	+	191	162448380	-	sce0110	-	hypothetical protein
112	 69.25	0	151480..153801	+	773	162448381	-	sce0111	-	Rhs family carbohydrate-binding protein
113	 66.05	-1	153798..155090	+	430	162448382	-	sce0112	-	hypothetical protein
114	 66.08	-1	155341..156543	+	400	162448383	-	sce0113	-	hypothetical protein
115	 67.06	0	156701..157972	+	423	162448384	-	sce0114	-	hypothetical protein
116	 67.75	0	158075..159370	+	431	162448385	-	sce0115	-	hypothetical protein
117	 77.21	+1	159493..161238	+	581	162448386	-	sce0116	-	putative amidase
118	 71.26	0	161235..161930	+	231	162448387	-	sce0117	-	hypothetical protein
119	 74.64	0	161995..162408	-	137	162448388	-	sce0118	-	hypothetical protein
120	 72.14	0	162446..166753	-	1435	162448389	-	sce0119	-	putative cell surface protein
121	 71.79	0	166750..168603	-	617	162448390	-	sce0120	-	putative ompA family protein
122	 67.63	0	169078..169491	-	137	162448391	-	sce0121	-	hypothetical protein
123	 69.95	0	169545..170762	+	405	162448392	cypA1	sce0122	-	cytochrome P450 CYP109C1
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.