IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
556	 69.93	0	796172..797917	-	581	162448825	-	sce0555	-	signal peptide
557	 69.07	0	798079..798786	-	235	162448826	-	sce0556	-	putative secreted protein
558	 76.57	+1	798783..799529	-	248	162448827	-	sce0557	-	hypothetical protein
559	 68.50	0	799529..800074	-	181	162448828	-	sce0558	-	ECF family RNA polymerase sigma factor
560	 74.47	0	800089..801267	+	392	162448829	-	sce0559	-	hypothetical protein
561	 70.45	0	802099..802839	-	246	162448830	ygcH	sce0560	-	hypothetical protein
562	 67.40	0	803516..803923	+	135	162448831	-	sce0561	-	hypothetical protein
563	 67.85	0	805619..806209	+	196	162448832	-	sce0562	-	hypothetical protein
564	 73.17	0	806922..807290	+	122	162448833	-	sce0563	-	hypothetical protein
565	 73.14	0	807371..808513	+	380	162448834	ddlA1	sce0564	-	D-alanine-D-alanine ligase
566	 78.63	+1	808676..809770	-	364	162448835	-	sce0565	-	hypothetical protein
567	 75.43	+1	809921..810673	-	250	162448836	-	sce0566	-	hypothetical protein
568	 75.00	0	810774..813125	+	783	162448837	-	sce0567	-	uvrD/Rep helicase family protein
569	 73.68	0	814126..816108	+	660	162448838	-	sce0568	-	hemoglobin
570	 68.74	0	816217..818097	+	626	162448839	-	sce0569	-	protein kinase
571	 67.44	0	818198..818971	-	257	162448840	-	sce0570	-	hypothetical protein
572	 72.92	0	819277..820683	-	468	162448841	-	sce0571	-	major facilitator superfamily permease
573	 78.32	+1	821039..821965	-	308	162448842	gltX1	sce0572	-	hypothetical protein
574	 68.39	0	822033..823829	-	598	162448843	gltX2	sce0573	-	hypothetical protein
575	 70.20	0	823987..825912	-	641	162448844	cyaX	sce0574	-	putative adenylate cyclase
576	 64.89	-1	826097..826882	+	261	162448845	-	sce0575	-	hypothetical protein
577	 69.51	0	827104..827490	-	128	162448846	-	sce0576	-	low molecular weight heat shock protein
578	 66.88	-1	827602..828066	-	154	162448847	-	sce0577	-	HSP20 family protein
579	 70.79	0	828578..829159	+	193	162448848	-	sce0578	-	hypothetical protein
580	 75.85	+1	829194..830108	-	304	162448849	-	sce0579	-	MerR family transcriptional regulator
581	 72.98	0	830367..831902	+	511	162448850	crtI1	sce0580	-	phytoene dehydrogenase
582	 77.85	+1	831883..832839	+	318	162448851	crtB	sce0581	-	phytoene synthase
583	 78.44	+1	832906..834375	+	489	162448852	-	sce0582	-	hypothetical protein
584	 76.22	+1	834400..834891	-	163	162448853	crtZ	sce0583	-	Beta-carotene hydroxylase
585	 75.93	+1	834888..835772	-	294	162448854	crtC	sce0584	-	hydroxyneurosporene dehydrogenase
586	 74.97	0	835769..837322	-	517	162448855	crtD	sce0585	-	putative methoxyneurosporene dehydrogenase
587	 75.44	+1	837445..838356	+	303	162448856	crtE	sce0586	-	farnesyltranstransferase
588	 76.06	+1	838800..840566	+	588	162448857	-	sce0587	-	acyl-CoA dehydrogenase
589	 72.08	0	840859..841947	+	362	162448858	-	sce0588	-	MaoC family protein
590	 74.16	0	842203..844338	+	711	162448859	-	sce0589	-	two-component hybrid sensor and regulator
591	 70.15	0	844508..845053	+	181	162448860	-	sce0590	-	hypothetical protein
592	 67.56	0	845054..846511	-	485	162448861	-	sce0591	-	SAM-dependent methyltransferases
593	 78.02	+1	846772..847863	-	363	162448862	-	sce0592	-	hypothetical protein
594	 72.84	0	847867..849081	-	404	162448863	-	sce0593	-	cell wall surface anchor family protein
595	 76.83	+1	849156..850001	-	281	162448864	rbsK	sce0594	-	ribokinase
596	 72.40	0	850037..852007	-	656	162448865	-	sce0595	-	hypothetical protein
597	 74.07	0	852265..853074	+	269	162448866	-	sce0596	-	Sir2 family transcriptional regulator
598	 64.58	-1	853217..853456	+	79	162448867	-	sce0597	-	hypothetical protein
599	 73.03	0	853484..854395	-	303	162448868	-	sce0598	-	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
600	 71.72	0	854526..855395	+	289	162448869	bcpA	sce0599	-	carboxyvinyl-carboxyphosphonate phosphorylmutase
601	 73.69	0	855406..856587	+	393	162448870	-	sce0600	-	putative hydroxylase
602	 68.92	0	856710..857330	-	206	162448871	-	sce0601	-	glutathione S-transferase
603	 69.23	0	857356..858057	-	233	162448872	gst2	sce0602	-	hypothetical protein
604	 71.65	0	858809..859390	+	193	162448873	rimJ2	sce0603	-	acetyltransferase
605	 73.98	0	859497..859988	-	163	162448874	-	sce0604	-	putative acteyltransferase
606	 75.26	+1	860026..864378	-	1450	162448875	-	sce0605	-	hypothetical protein
607	 74.97	0	864450..865340	+	296	162448876	-	sce0606	-	hypothetical protein
608	 67.34	0	865397..865693	+	98	162448877	-	sce0607	-	hypothetical protein
609	 76.17	+1	865838..870739	+	1633	162448878	-	sce0608	-	hypothetical protein
610	 77.29	+1	870736..876738	+	2000	162448879	-	sce0609	-	hypothetical protein
611	 68.02	0	876735..877178	+	147	162448880	-	sce0610	-	hypothetical protein
612	 71.73	0	877214..878851	-	545	162448881	crtI2	sce0611	-	putative phytoene dehydrogenase
613	 77.27	+1	878980..879441	-	153	162448882	-	sce0612	-	hypothetical protein
614	 69.44	0	879468..880331	-	287	162448883	-	sce0613	-	putative ABC transporter permease protein
615	 69.34	0	880418..880978	-	186	162448884	-	sce0614	-	putative secreted protein
616	 70.19	0	881132..881953	-	273	162448885	-	sce0615	-	uncharacterized membrane protein
617	 73.08	0	881981..883570	+	529	162448886	cysS1	sce0616	-	hypothetical protein
618	 71.58	0	883729..884685	+	318	162448887	-	sce0617	-	DnaJ molecular chaperone
619	 78.61	+1	884736..885815	+	359	162448888	-	sce0618	-	hypothetical protein
620	 77.23	+1	886016..887482	+	488	162448889	-	sce0619	-	protein kinase
621	 75.90	+1	887493..888737	-	414	162448890	-	sce0620	-	anthranilate synthase component I
622	 73.17	0	888803..889540	+	245	162448891	-	sce0621	-	hypothetical protein
623	 64.20	-1	889616..890224	-	202	162448892	-	sce0622	-	hypothetical protein
624	 65.28	-1	890868..891011	-	47	162448893	-	sce0623	-	hypothetical protein
625	 71.89	0	891040..893796	-	918	162448894	-	sce0624	-	two-component hybrid sensor and regulator
626	 72.53	0	893969..894940	-	323	162448895	-	sce0625	-	electron transfer flavoprotein alpha-subunit
627	 69.20	0	895040..895867	-	275	162448896	-	sce0626	-	putative electron transfer flavoprotein beta-subunit
628	 70.59	0	896458..897273	-	271	162448897	-	sce0627	-	hypothetical protein
629	 65.69	-1	897332..897433	-	33	162448898	-	sce0628	-	hypothetical protein
630	 74.33	0	897539..898177	-	212	162448899	-	sce0629	-	RNA polymerase sigma factor
631	 74.43	0	898228..898536	-	102	162448900	-	sce0630	-	hypothetical protein
632	 76.64	+1	898829..900031	+	400	162448901	-	sce0631	-	protein kinase
633	 72.65	0	900031..902670	+	879	162448902	-	sce0632	-	protein kinase
634	 76.18	+1	902700..903824	+	374	162448903	-	sce0633	-	hypothetical protein
635	 69.09	0	903842..904954	+	370	162448904	-	sce0634	-	hypothetical protein
636	 70.04	0	904975..906546	+	523	162448905	-	sce0635	-	putative secreted protein
637	 70.20	0	906905..908065	+	386	162448906	-	sce0636	-	hypothetical protein
638	 70.32	0	908086..909645	+	519	162448907	-	sce0637	-	putative secreted protein
639	 70.33	0	911806..912570	+	254	162448908	pp2c1	sce0638	-	phosphoprotein phosphatase
640	 71.32	0	913756..915432	+	558	162448909	nadB	sce0639	-	L-aspartate oxidase
641	 74.32	0	915516..916391	+	291	162448910	-	sce0640	-	hypothetical protein
642	 73.91	0	916388..917629	+	413	162448911	-	sce0641	-	hypothetical protein
643	 70.26	0	917666..918166	-	166	162448912	ychJ	sce0642	-	hypothetical protein
644	 66.45	-1	918411..918878	+	155	162448913	-	sce0643	-	hypothetical protein
645	 67.47	0	919034..921142	+	702	162448914	fusA1	sce0644	-	elongation factor G
646	 70.39	0	921153..922469	+	438	162448915	-	sce0645	-	hypothetical protein
647	 65.64	-1	922573..923058	-	161	162448916	-	sce0646	-	hypothetical protein
648	 78.35	+1	923402..924445	+	347	162448917	-	sce0647	-	hypothetical protein
649	 70.41	0	924610..925197	+	195	162448918	-	sce0648	-	ompA-family exported protein
650	 71.26	0	925348..926088	+	246	162448919	tolQ1	sce0649	-	putative transport transmembrane protein, tolQ
651	 73.49	0	926110..926607	+	165	162448920	tolR1	sce0650	-	putative transport transmembrane protein
652	 73.17	0	926604..927464	+	286	162448921	-	sce0651	-	putative tonB-like protein
653	 71.01	0	927455..928789	+	444	162448922	tolB	sce0652	-	tolB protein
654	 71.55	0	929114..929686	+	190	162448923	-	sce0653	-	hypothetical protein
655	 70.47	0	930102..930680	+	192	162448924	-	sce0654	-	hypothetical protein
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.