IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
499	 66.34	-1	705584..706204	+	206	162448768	-	sce0498	-	hypothetical protein
500	 70.59	0	706252..707856	+	534	162448769	-	sce0499	-	protease
501	 77.04	+1	707880..708824	+	314	162448770	-	sce0500	-	hypothetical protein
502	 75.56	+1	708948..710522	+	524	162448771	-	sce0501	-	hypothetical protein
503	 77.40	+1	711069..712550	+	493	162448772	copB	sce0502	-	copper tolerance protein
504	 71.69	0	712552..713886	+	444	162448773	copA	sce0503	-	multicopper oxidase
505	 75.33	+1	714127..714738	+	203	162448774	-	sce0504	-	hypothetical protein
506	 67.99	0	714783..715388	-	201	162448775	-	sce0505	-	hypothetical protein
507	 74.74	0	715471..716808	-	445	162448776	-	sce0506	-	putative integral membrane protein
508	 76.18	+1	716867..718978	-	703	162448777	-	sce0507	-	hypothetical protein
509	 80.22	+2	719021..720127	-	368	162448778	-	sce0508	-	hypothetical protein
510	 68.62	0	720060..721289	-	409	162448779	tyrS	sce0509	-	hypothetical protein
511	 66.38	-1	721448..721792	-	114	162448780	ihfB	sce0510	-	integration host factor beta-subunit
512	 79.18	+1	721927..724323	-	798	162448781	-	sce0511	-	hypothetical protein
513	 74.63	0	724325..726736	-	803	162448782	-	sce0512	-	hypothetical protein
514	 73.22	0	727173..729734	+	853	162448783	-	sce0513	-	disulfide bond formation protein D precursor
515	 72.56	0	729918..730664	-	248	162448784	-	sce0514	-	hypothetical protein
516	 73.27	0	731079..731744	+	221	162448785	-	sce0515	-	hypothetical protein
517	 71.75	0	731757..733448	+	563	162448786	-	sce0516	-	two-component sensor histidine kinase
518	 77.63	+1	733445..734548	+	367	162448787	-	sce0517	-	hypothetical protein
519	 72.33	0	735368..736567	+	399	162448788	-	sce0518	-	lipase
520	 70.38	0	736702..739611	+	969	162448789	-	sce0519	-	putative secreted protein
521	 70.03	0	739849..742377	+	842	162448790	-	sce0520	-	hypothetical protein
522	 72.19	0	742749..743870	+	373	162448791	-	sce0521	-	hypothetical protein
523	 63.31	-1	744131..744487	+	118	162448792	nuoA1	sce0522	-	NADH dehydrogenase (ubiquinone)
524	 69.57	0	744475..745059	+	194	162448793	nuoB1	sce0523	-	NADH dehydrogenase (ubiquinone)
525	 69.57	0	745056..745709	+	217	162448794	nuoC1	sce0524	-	NADH dehydrogenase (ubiquinone)
526	 67.33	0	745713..746927	+	404	162448795	nuoD1	sce0525	-	NADH dehydrogenase (ubiquinone)
527	 72.34	0	747007..748698	+	563	162448796	nuoG	sce0526	-	NADH dehydrogenase (ubiquinone)
528	 69.50	0	748695..750461	+	588	162448797	nuoH	sce0527	-	NADH dehydrogenase (ubiquinone)
529	 69.78	0	750473..751147	+	224	162448798	nuoI	sce0528	-	NADH dehydrogenase I chain I
530	 70.92	0	751347..752804	+	485	162448799	gatB	sce0529	-	glutamyl-tRNA(Gln) amidotransferase, B subunit
531	 71.87	0	752946..753791	+	281	162448800	-	sce0530	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
532	 73.40	0	753843..757301	+	1152	162448801	-	sce0531	-	hypothetical protein
533	 67.57	0	757853..759076	-	407	162448802	-	sce0532	-	putative peptidase
534	 67.47	0	759441..760433	-	330	162448803	-	sce0533	-	putative secreted trypsin-like serine protease
535	 65.80	-1	760445..762517	-	690	162448804	-	sce0534	-	hypothetical protein
536	 64.72	-1	762723..763184	-	153	162448805	-	sce0535	-	hypothetical protein
537	 69.68	0	763234..764130	-	298	162448806	-	sce0536	-	hypothetical protein
538	 66.74	-1	764186..765637	-	483	162448807	-	sce0537	-	hypothetical protein
539	 72.21	0	766404..769832	+	1142	162448808	-	sce0538	-	protein kinase
540	 63.98	-1	769882..770589	+	235	162448809	-	sce0539	-	hypothetical protein
541	 70.43	0	770586..771860	+	424	162448810	-	sce0540	-	hypothetical protein
542	 71.13	0	771857..772954	+	365	162448811	-	sce0541	-	hypothetical protein
543	 65.55	-1	773019..774812	-	597	162448812	-	sce0542	-	peptidase
544	 71.58	0	774966..776735	+	589	162448813	-	sce0543	-	sigma-54 dependent transcriptional regulator
545	 75.89	+1	777107..778201	-	364	162448814	-	sce0544	-	hypothetical protein
546	 71.10	0	778198..779460	-	420	162448815	-	sce0545	-	helicase, putative
547	 68.50	0	779473..779745	+	90	162448816	-	sce0546	-	hypothetical protein
548	 69.62	0	779757..780773	+	338	162448817	-	sce0547	-	cation efflux system protein
549	 69.08	0	780770..781348	+	192	162448818	yebN	sce0548	-	hypothetical protein
550	 74.21	0	781428..782780	-	450	162448819	glgA1	sce0549	-	glycogen synthase
551	 71.64	0	783249..785801	-	850	162448820	-	sce0550	-	hypothetical protein
552	 69.03	0	785995..791664	+	1889	162448821	-	sce0551	-	NHL repeat-containing protein
553	 67.97	0	791857..793548	+	563	162448822	-	sce0552	-	putative secreted protein
554	 71.87	0	793644..794642	-	332	162448823	-	sce0553	-	AraC family transcriptional regulator
555	 67.60	0	794784..796175	-	463	162448824	-	sce0554	-	putative secreted protein
556	 69.93	0	796172..797917	-	581	162448825	-	sce0555	-	signal peptide
557	 69.07	0	798079..798786	-	235	162448826	-	sce0556	-	putative secreted protein
558	 76.57	+1	798783..799529	-	248	162448827	-	sce0557	-	hypothetical protein
559	 68.50	0	799529..800074	-	181	162448828	-	sce0558	-	ECF family RNA polymerase sigma factor
560	 74.47	0	800089..801267	+	392	162448829	-	sce0559	-	hypothetical protein
561	 70.45	0	802099..802839	-	246	162448830	ygcH	sce0560	-	hypothetical protein
562	 67.40	0	803516..803923	+	135	162448831	-	sce0561	-	hypothetical protein
563	 67.85	0	805619..806209	+	196	162448832	-	sce0562	-	hypothetical protein
564	 73.17	0	806922..807290	+	122	162448833	-	sce0563	-	hypothetical protein
565	 73.14	0	807371..808513	+	380	162448834	ddlA1	sce0564	-	D-alanine-D-alanine ligase
566	 78.63	+1	808676..809770	-	364	162448835	-	sce0565	-	hypothetical protein
567	 75.43	+1	809921..810673	-	250	162448836	-	sce0566	-	hypothetical protein
568	 75.00	0	810774..813125	+	783	162448837	-	sce0567	-	uvrD/Rep helicase family protein
569	 73.68	0	814126..816108	+	660	162448838	-	sce0568	-	hemoglobin
570	 68.74	0	816217..818097	+	626	162448839	-	sce0569	-	protein kinase
571	 67.44	0	818198..818971	-	257	162448840	-	sce0570	-	hypothetical protein
572	 72.92	0	819277..820683	-	468	162448841	-	sce0571	-	major facilitator superfamily permease
573	 78.32	+1	821039..821965	-	308	162448842	gltX1	sce0572	-	hypothetical protein
574	 68.39	0	822033..823829	-	598	162448843	gltX2	sce0573	-	hypothetical protein
575	 70.20	0	823987..825912	-	641	162448844	cyaX	sce0574	-	putative adenylate cyclase
576	 64.89	-1	826097..826882	+	261	162448845	-	sce0575	-	hypothetical protein
577	 69.51	0	827104..827490	-	128	162448846	-	sce0576	-	low molecular weight heat shock protein
578	 66.88	-1	827602..828066	-	154	162448847	-	sce0577	-	HSP20 family protein
579	 70.79	0	828578..829159	+	193	162448848	-	sce0578	-	hypothetical protein
580	 75.85	+1	829194..830108	-	304	162448849	-	sce0579	-	MerR family transcriptional regulator
581	 72.98	0	830367..831902	+	511	162448850	crtI1	sce0580	-	phytoene dehydrogenase
582	 77.85	+1	831883..832839	+	318	162448851	crtB	sce0581	-	phytoene synthase
583	 78.44	+1	832906..834375	+	489	162448852	-	sce0582	-	hypothetical protein
584	 76.22	+1	834400..834891	-	163	162448853	crtZ	sce0583	-	Beta-carotene hydroxylase
585	 75.93	+1	834888..835772	-	294	162448854	crtC	sce0584	-	hydroxyneurosporene dehydrogenase
586	 74.97	0	835769..837322	-	517	162448855	crtD	sce0585	-	putative methoxyneurosporene dehydrogenase
587	 75.44	+1	837445..838356	+	303	162448856	crtE	sce0586	-	farnesyltranstransferase
588	 76.06	+1	838800..840566	+	588	162448857	-	sce0587	-	acyl-CoA dehydrogenase
589	 72.08	0	840859..841947	+	362	162448858	-	sce0588	-	MaoC family protein
590	 74.16	0	842203..844338	+	711	162448859	-	sce0589	-	two-component hybrid sensor and regulator
591	 70.15	0	844508..845053	+	181	162448860	-	sce0590	-	hypothetical protein
592	 67.56	0	845054..846511	-	485	162448861	-	sce0591	-	SAM-dependent methyltransferases
593	 78.02	+1	846772..847863	-	363	162448862	-	sce0592	-	hypothetical protein
594	 72.84	0	847867..849081	-	404	162448863	-	sce0593	-	cell wall surface anchor family protein
595	 76.83	+1	849156..850001	-	281	162448864	rbsK	sce0594	-	ribokinase
596	 72.40	0	850037..852007	-	656	162448865	-	sce0595	-	hypothetical protein
597	 74.07	0	852265..853074	+	269	162448866	-	sce0596	-	Sir2 family transcriptional regulator
598	 64.58	-1	853217..853456	+	79	162448867	-	sce0597	-	hypothetical protein
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.