IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
471	 70.62	0	667985..668617	+	210	162448740	-	sce0470	-	hypothetical protein
472	 70.15	0	668709..670547	-	612	162448741	-	sce0471	-	hypothetical protein
473	 65.70	-1	670790..671305	+	171	162448742	-	sce0472	-	hypothetical protein
474	 75.25	+1	671371..672861	-	496	162448743	-	sce0473	-	hypothetical protein
475	 77.03	+1	673430..674317	-	295	162448744	-	sce0474	-	hypothetical protein
476	 68.65	0	674649..675806	+	385	162448745	adh1	sce0475	-	alcohol dehydrogenase
477	 71.52	0	676154..676627	+	157	162448746	-	sce0476	-	hypothetical protein
478	 74.07	0	676691..677716	+	341	162448747	-	sce0477	-	hypothetical protein
479	 72.41	0	677728..679293	+	521	162448748	yfbK	sce0478	-	hypothetical protein
480	 68.65	0	679557..680414	+	285	162448749	-	sce0479	-	hypothetical protein
481	 72.19	0	680425..681330	+	301	162448750	-	sce0480	-	hypothetical protein
482	 78.06	+1	681396..682826	-	476	162448751	-	sce0481	-	hypothetical protein
483	 79.42	+2	682993..685611	+	872	162448752	-	sce0482	-	hypothetical protein
484	 79.40	+2	685655..686455	+	266	162448753	-	sce0483	-	hypothetical protein
485	 79.17	+1	686502..687581	-	359	162448754	-	sce0484	-	hypothetical protein
486	 74.64	0	687866..689257	+	463	162448755	-	sce0485	-	hypothetical protein
487	 77.13	+1	689276..690250	-	324	162448756	-	sce0486	-	hypothetical protein
488	 70.59	0	690730..692436	+	568	162448757	-	sce0487	-	protein kinase
489	 72.74	0	692536..694725	+	729	162448758	otsA	sce0488	-	Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
490	 69.71	0	694742..696583	-	613	162448759	-	sce0489	-	hypothetical protein
491	 75.40	+1	696792..697409	+	205	162448760	-	sce0490	-	hypothetical protein
492	 70.49	0	697601..698935	+	444	162448761	mgtE1	sce0491	-	Mg2+ transporter
493	 65.36	-1	699935..700240	+	101	162448762	-	sce0492	-	hypothetical protein
494	 70.60	0	700364..701101	+	245	162448763	-	sce0493	-	phosphoglycerate mutase
495	 67.00	0	701207..702100	+	297	162448764	purU	sce0494	-	formyltetrahydrofolate deformylase
496	 73.37	0	702226..702777	-	183	162448765	-	sce0495	-	hypothetical protein
497	 65.66	-1	703434..704126	-	230	162448766	-	sce0496	-	putative glutathione transferase
498	 78.06	+1	704295..705224	-	309	162448767	-	sce0497	-	putative homocysteine S-methyltransferase family protein
499	 66.34	-1	705584..706204	+	206	162448768	-	sce0498	-	hypothetical protein
500	 70.59	0	706252..707856	+	534	162448769	-	sce0499	-	protease
501	 77.04	+1	707880..708824	+	314	162448770	-	sce0500	-	hypothetical protein
502	 75.56	+1	708948..710522	+	524	162448771	-	sce0501	-	hypothetical protein
503	 77.40	+1	711069..712550	+	493	162448772	copB	sce0502	-	copper tolerance protein
504	 71.69	0	712552..713886	+	444	162448773	copA	sce0503	-	multicopper oxidase
505	 75.33	+1	714127..714738	+	203	162448774	-	sce0504	-	hypothetical protein
506	 67.99	0	714783..715388	-	201	162448775	-	sce0505	-	hypothetical protein
507	 74.74	0	715471..716808	-	445	162448776	-	sce0506	-	putative integral membrane protein
508	 76.18	+1	716867..718978	-	703	162448777	-	sce0507	-	hypothetical protein
509	 80.22	+2	719021..720127	-	368	162448778	-	sce0508	-	hypothetical protein
510	 68.62	0	720060..721289	-	409	162448779	tyrS	sce0509	-	hypothetical protein
511	 66.38	-1	721448..721792	-	114	162448780	ihfB	sce0510	-	integration host factor beta-subunit
512	 79.18	+1	721927..724323	-	798	162448781	-	sce0511	-	hypothetical protein
513	 74.63	0	724325..726736	-	803	162448782	-	sce0512	-	hypothetical protein
514	 73.22	0	727173..729734	+	853	162448783	-	sce0513	-	disulfide bond formation protein D precursor
515	 72.56	0	729918..730664	-	248	162448784	-	sce0514	-	hypothetical protein
516	 73.27	0	731079..731744	+	221	162448785	-	sce0515	-	hypothetical protein
517	 71.75	0	731757..733448	+	563	162448786	-	sce0516	-	two-component sensor histidine kinase
518	 77.63	+1	733445..734548	+	367	162448787	-	sce0517	-	hypothetical protein
519	 72.33	0	735368..736567	+	399	162448788	-	sce0518	-	lipase
520	 70.38	0	736702..739611	+	969	162448789	-	sce0519	-	putative secreted protein
521	 70.03	0	739849..742377	+	842	162448790	-	sce0520	-	hypothetical protein
522	 72.19	0	742749..743870	+	373	162448791	-	sce0521	-	hypothetical protein
523	 63.31	-1	744131..744487	+	118	162448792	nuoA1	sce0522	-	NADH dehydrogenase (ubiquinone)
524	 69.57	0	744475..745059	+	194	162448793	nuoB1	sce0523	-	NADH dehydrogenase (ubiquinone)
525	 69.57	0	745056..745709	+	217	162448794	nuoC1	sce0524	-	NADH dehydrogenase (ubiquinone)
526	 67.33	0	745713..746927	+	404	162448795	nuoD1	sce0525	-	NADH dehydrogenase (ubiquinone)
527	 72.34	0	747007..748698	+	563	162448796	nuoG	sce0526	-	NADH dehydrogenase (ubiquinone)
528	 69.50	0	748695..750461	+	588	162448797	nuoH	sce0527	-	NADH dehydrogenase (ubiquinone)
529	 69.78	0	750473..751147	+	224	162448798	nuoI	sce0528	-	NADH dehydrogenase I chain I
530	 70.92	0	751347..752804	+	485	162448799	gatB	sce0529	-	glutamyl-tRNA(Gln) amidotransferase, B subunit
531	 71.87	0	752946..753791	+	281	162448800	-	sce0530	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
532	 73.40	0	753843..757301	+	1152	162448801	-	sce0531	-	hypothetical protein
533	 67.57	0	757853..759076	-	407	162448802	-	sce0532	-	putative peptidase
534	 67.47	0	759441..760433	-	330	162448803	-	sce0533	-	putative secreted trypsin-like serine protease
535	 65.80	-1	760445..762517	-	690	162448804	-	sce0534	-	hypothetical protein
536	 64.72	-1	762723..763184	-	153	162448805	-	sce0535	-	hypothetical protein
537	 69.68	0	763234..764130	-	298	162448806	-	sce0536	-	hypothetical protein
538	 66.74	-1	764186..765637	-	483	162448807	-	sce0537	-	hypothetical protein
539	 72.21	0	766404..769832	+	1142	162448808	-	sce0538	-	protein kinase
540	 63.98	-1	769882..770589	+	235	162448809	-	sce0539	-	hypothetical protein
541	 70.43	0	770586..771860	+	424	162448810	-	sce0540	-	hypothetical protein
542	 71.13	0	771857..772954	+	365	162448811	-	sce0541	-	hypothetical protein
543	 65.55	-1	773019..774812	-	597	162448812	-	sce0542	-	peptidase
544	 71.58	0	774966..776735	+	589	162448813	-	sce0543	-	sigma-54 dependent transcriptional regulator
545	 75.89	+1	777107..778201	-	364	162448814	-	sce0544	-	hypothetical protein
546	 71.10	0	778198..779460	-	420	162448815	-	sce0545	-	helicase, putative
547	 68.50	0	779473..779745	+	90	162448816	-	sce0546	-	hypothetical protein
548	 69.62	0	779757..780773	+	338	162448817	-	sce0547	-	cation efflux system protein
549	 69.08	0	780770..781348	+	192	162448818	yebN	sce0548	-	hypothetical protein
550	 74.21	0	781428..782780	-	450	162448819	glgA1	sce0549	-	glycogen synthase
551	 71.64	0	783249..785801	-	850	162448820	-	sce0550	-	hypothetical protein
552	 69.03	0	785995..791664	+	1889	162448821	-	sce0551	-	NHL repeat-containing protein
553	 67.97	0	791857..793548	+	563	162448822	-	sce0552	-	putative secreted protein
554	 71.87	0	793644..794642	-	332	162448823	-	sce0553	-	AraC family transcriptional regulator
555	 67.60	0	794784..796175	-	463	162448824	-	sce0554	-	putative secreted protein
556	 69.93	0	796172..797917	-	581	162448825	-	sce0555	-	signal peptide
557	 69.07	0	798079..798786	-	235	162448826	-	sce0556	-	putative secreted protein
558	 76.57	+1	798783..799529	-	248	162448827	-	sce0557	-	hypothetical protein
559	 68.50	0	799529..800074	-	181	162448828	-	sce0558	-	ECF family RNA polymerase sigma factor
560	 74.47	0	800089..801267	+	392	162448829	-	sce0559	-	hypothetical protein
561	 70.45	0	802099..802839	-	246	162448830	ygcH	sce0560	-	hypothetical protein
562	 67.40	0	803516..803923	+	135	162448831	-	sce0561	-	hypothetical protein
563	 67.85	0	805619..806209	+	196	162448832	-	sce0562	-	hypothetical protein
564	 73.17	0	806922..807290	+	122	162448833	-	sce0563	-	hypothetical protein
565	 73.14	0	807371..808513	+	380	162448834	ddlA1	sce0564	-	D-alanine-D-alanine ligase
566	 78.63	+1	808676..809770	-	364	162448835	-	sce0565	-	hypothetical protein
567	 75.43	+1	809921..810673	-	250	162448836	-	sce0566	-	hypothetical protein
568	 75.00	0	810774..813125	+	783	162448837	-	sce0567	-	uvrD/Rep helicase family protein
569	 73.68	0	814126..816108	+	660	162448838	-	sce0568	-	hemoglobin
570	 68.74	0	816217..818097	+	626	162448839	-	sce0569	-	protein kinase
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.