IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
372	 65.71	-1	540072..540698	+	208	162448641	-	sce0371	-	hypothetical protein
373	 73.16	0	540698..541498	+	266	162448642	-	sce0372	-	hypothetical protein
374	 73.76	0	541717..542928	+	403	162448643	-	sce0373	-	putative beta-ketoadipyl CoA thiolase
375	 67.19	0	543089..543658	+	189	162448644	-	sce0374	-	putative peptidyl-prolyl cis-trans isomerase
376	 74.74	0	543720..544982	-	420	162448645	-	sce0375	-	hypothetical protein
377	 77.55	+1	545001..546047	-	348	162448646	-	sce0376	-	hypothetical protein
378	 74.43	0	546044..547885	-	613	162448647	-	sce0377	-	metallo-beta-lactamase family protein
379	 75.35	+1	548077..549885	+	602	162448648	sppA1	sce0378	-	protease IV
380	 69.78	0	550362..553766	+	1134	162448649	nrdA1	sce0379	-	putative ribonucleoside-diphosphate reductase
381	 71.94	0	553983..554627	+	214	162448650	-	sce0380	-	hypothetical protein
382	 75.92	+1	554823..555611	+	262	162448651	-	sce0381	-	hypothetical protein
383	 70.59	0	555955..556260	-	101	162448652	-	sce0382	-	hypothetical protein
384	 69.93	0	556239..556514	-	91	162448653	-	sce0383	-	putative antitoxin of toxin-antitoxin stability system
385	 77.27	+1	556583..557572	-	329	162448654	thiL	sce0384	-	thiamine-phosphate kinase
386	 70.84	0	557569..559173	-	534	162448655	-	sce0385	-	two-component sensor histidine kinase
387	 67.90	0	559170..559898	-	242	162448656	-	sce0386	-	hypothetical protein
388	 70.24	0	560017..561834	-	605	162448657	-	sce0387	-	hypothetical protein
389	 67.79	0	561879..562772	-	297	162448658	-	sce0388	-	hypothetical protein
390	 74.65	0	563015..564091	-	358	162448659	-	sce0389	-	putative homoserine kinase
391	 71.80	0	564273..566141	+	622	162448660	hflX1	sce0390	-	putative GTP-binding protein
392	 70.35	0	566187..567137	-	316	162448661	-	sce0391	-	hypothetical protein
393	 72.65	0	567148..568401	-	417	162448662	-	sce0392	-	hypothetical protein
394	 72.09	0	568588..569196	-	202	162448663	-	sce0393	-	putative siroheme synthase
395	 71.58	0	569303..570178	-	291	162448664	-	sce0394	-	hypothetical protein
396	 71.30	0	570175..571794	-	539	162448665	-	sce0395	-	putative outer membrane protein
397	 76.87	+1	571846..572766	-	306	162448666	-	sce0396	-	hypothetical protein
398	 72.90	0	573016..573705	-	229	162448667	hisIE	sce0397	-	hypothetical protein
399	 71.38	0	573709..575172	-	487	162448668	lgt1	sce0398	-	prolipoprotein diacylglyceryl transferase
400	 70.71	0	575424..576140	+	238	162448669	-	sce0399	-	hypothetical protein
401	 75.37	+1	576146..577696	+	516	162448670	-	sce0400	-	hypothetical protein
402	 71.69	0	578491..580302	-	603	162448671	-	sce0401	-	protein kinase
403	 66.08	-1	581602..582792	+	396	162448672	tufA1	sce0402	-	elongation factor Tu
404	 64.33	-1	582802..582972	+	56	162448673	rpmG1	sce0403	-	hypothetical protein
405	 67.17	0	583393..583791	+	132	162448674	secE	sce0404	-	preprotein translocase, SecE subunit
406	 62.15	-2	583822..584352	+	176	162448675	nusG	sce0405	-	transcription antitermination protein NusG
407	 64.41	-1	584470..584913	+	147	162448676	rplK	sce0406	-	50S ribosomal protein L11
408	 67.37	0	585059..585769	+	236	162448677	rplA	sce0407	-	hypothetical protein
409	 63.47	-1	585773..586303	+	176	162448678	rplJ	sce0408	-	50S ribosomal protein L10
410	 65.63	-1	586402..586788	+	128	162448679	rplL	sce0409	-	50S ribosomal protein L7/L12
411	 66.13	-1	587152..591288	+	1378	162448680	rpoB	sce0410	-	DNA-directed RNA polymerase
412	 67.27	0	591430..595713	+	1427	162448681	rpoC	sce0411	-	DNA-directed RNA polymerase, beta' subunit
413	 70.96	0	596110..598392	+	760	162448682	-	sce0412	-	response regulator
414	 72.70	0	598414..599043	+	209	162448683	rimJ1	sce0413	-	ribosomal-protein-alanine N-acetyltransferase
415	 71.52	0	599251..600198	+	315	162448684	panB	sce0414	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
416	 79.06	+1	600311..602440	-	709	162448685	-	sce0415	-	hypothetical protein
417	 76.35	+1	602437..603396	-	319	162448686	-	sce0416	-	hypothetical protein
418	 73.01	0	603652..605511	+	619	162448687	-	sce0417	-	putative membrane bound zinc metallopeptidase
419	 71.93	0	605515..606996	-	493	162448688	-	sce0418	-	hypothetical protein
420	 72.50	0	607066..608334	-	422	162448689	-	sce0419	-	protein kinase
421	 74.74	0	608331..609308	-	325	162448690	-	sce0420	-	hypothetical protein
422	 74.62	0	609417..610472	+	351	162448691	-	sce0421	-	outer membrane protein
423	 68.55	0	610515..611525	-	336	162448692	-	sce0422	-	hypothetical protein
424	 76.11	+1	612591..614126	-	511	162448693	-	sce0423	-	hypothetical protein
425	 72.09	0	614119..615777	-	552	162448694	-	sce0424	-	hypothetical protein
426	 71.98	0	615998..617221	+	407	162448695	-	sce0425	-	hypothetical protein
427	 70.55	0	617255..617692	+	145	162448696	-	sce0426	-	rhodanese-like domain-containing protein
428	 73.98	0	617788..618498	+	236	162448697	-	sce0427	-	glycosyltransferase
429	 72.15	0	618706..620928	+	740	162448698	-	sce0428	-	histidine kinase
430	 69.92	0	620925..621293	+	122	162448699	-	sce0429	-	two-component response regulator
431	 68.86	0	621281..622282	-	333	162448700	-	sce0430	-	hypothetical protein
432	 76.84	+1	623237..627196	-	1319	162448701	-	sce0431	-	protein kinase
433	 68.95	0	627663..628187	+	174	162448702	-	sce0432	-	hypothetical protein
434	 72.39	0	628421..629695	+	424	162448703	-	sce0433	-	hypothetical protein
435	 76.02	+1	629775..631313	+	512	162448704	-	sce0434	-	GntR family transcriptional regulator
436	 66.67	-1	631622..632089	+	155	162448705	-	sce0435	-	hypothetical protein
437	 77.47	+1	632350..633858	-	502	162448706	-	sce0436	-	AMP-dependent synthetase and ligase
438	 68.89	0	633869..634138	-	89	162448707	-	sce0437	-	Acyl carrier protein-like
439	 65.80	-1	634173..635558	-	461	162448708	-	sce0438	-	cystathionine beta-synthase
440	 72.73	0	635942..637309	+	455	162448709	-	sce0439	-	transcriptional regulator
441	 65.33	-1	637441..637740	-	99	162448710	-	sce0440	-	hypothetical protein
442	 64.81	-1	638271..638432	+	53	162448711	-	sce0441	-	hypothetical protein
443	 68.97	0	638832..640046	+	404	162448712	-	sce0442	-	Serine-pyruvate aminotransferase
444	 74.58	0	640043..641875	-	610	162448713	eriC	sce0443	-	chloride channel
445	 76.54	+1	641937..642503	-	188	162448714	-	sce0444	-	MarR family transcriptional regulator
446	 67.93	0	642746..643693	+	315	162448715	glyQ	sce0445	-	glycyl-tRNA synthetase subunit alpha
447	 74.61	0	643805..644383	-	192	162448716	pyrE	sce0446	-	putative orotate phosphoribosyltransferase
448	 81.51	+2	644380..645093	-	237	162448717	-	sce0447	-	hypothetical protein
449	 68.57	0	645097..645411	-	104	162448718	-	sce0448	-	hypothetical protein
450	 73.89	0	645466..645894	-	142	162448719	-	sce0449	-	hypothetical protein
451	 70.40	0	646537..647901	+	454	162448720	-	sce0450	-	putative oxidoreductase
452	 71.45	0	648022..648753	-	243	162448721	-	sce0451	-	hypothetical protein
453	 64.30	-1	648800..649348	-	182	162448722	-	sce0452	-	hypothetical protein
454	 75.76	+1	649421..650047	-	208	162448723	-	sce0453	-	DNA repair protein
455	 74.62	0	650044..650697	-	217	162448724	-	sce0454	-	hypothetical protein
456	 69.18	0	650866..651144	+	92	162448725	-	sce0455	-	Cro/CI family transcriptional regulator
457	 66.25	-1	651516..652466	-	316	162448726	-	sce0456	-	integrase/recombinase
458	 60.63	-2	653002..653382	+	126	162448727	-	sce0457	-	hypothetical protein
459	 59.06	-2	653495..653836	+	113	162448728	-	sce0458	-	hypothetical protein
460	 61.75	-2	654432..655286	+	284	162448729	-	sce0459	-	hypothetical protein
461	 72.78	0	655505..656617	+	370	162448730	-	sce0460	-	hypothetical protein
462	 67.14	0	657630..658052	+	140	162448731	-	sce0461	-	hypothetical protein
463	 62.70	-2	658042..658470	+	142	162448732	-	sce0462	-	hypothetical protein
464	 71.05	0	658672..659538	-	288	162448733	-	sce0463	-	hypothetical protein
465	 59.24	-2	660517..661014	+	165	162448734	-	sce0464	-	hypothetical protein
466	 66.09	-1	661030..661893	+	287	162448735	-	sce0465	-	hypothetical protein
467	 60.03	-2	661904..662551	-	215	162448736	-	sce0466	-	putative secreted protein
468	 64.75	-1	662563..663240	-	225	162448737	-	sce0467	-	putative membrane associated protein
469	 77.00	+1	663249..666374	-	1041	162448738	-	sce0468	-	hypothetical protein
470	 73.02	0	666769..667917	+	382	162448739	-	sce0469	-	protein kinase
471	 70.62	0	667985..668617	+	210	162448740	-	sce0470	-	hypothetical protein
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.