IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3870	 73.07	0	5375831..5377906	-	691	162452139	-	sce3866	-	hypothetical protein
3871	 68.39	0	5378146..5379654	-	502	162452140	-	sce3867	-	hypothetical protein
3872	 71.43	0	5379841..5381289	-	482	162452141	-	sce3868	-	alkaline D-peptidase
3873	 71.27	0	5381517..5382905	-	462	162452142	-	sce3869	-	hypothetical protein
3874	 70.16	0	5383307..5384194	-	295	162452143	-	sce3870	-	hypothetical protein
3875	 68.52	0	5384509..5385102	-	197	162452144	-	sce3871	-	hypothetical protein
3876	 71.34	0	5385152..5385643	+	163	162452145	-	sce3872	-	putative cyclase/dehyrase
3877	 78.21	+1	5385632..5389045	-	1137	162452146	-	sce3873	-	WD repeat-containing protein
3878	 76.36	+1	5389169..5390035	-	288	162452147	-	sce3874	-	hypothetical protein
3879	 69.57	0	5390669..5393185	+	838	162452148	nrdA2	sce3875	-	ribonucleoside-diphosphate reductase
3880	 68.14	0	5393182..5394201	+	339	162452149	nrdB	sce3876	-	ribonucleotide-diphosphate reductase
3881	 72.26	0	5394236..5395468	-	410	162452150	-	sce3877	-	putative secreted protein
3882	 76.61	+1	5395462..5397492	-	676	162452151	-	sce3878	-	putative outer membrane protein
3883	 72.92	0	5398169..5399431	+	420	162452152	mxcD	sce3879	-	hypothetical protein
3884	 73.78	0	5399428..5401086	+	552	162452153	mxcE	sce3880	-	(2,3-dihydroxybenzoyl)adenylate synthase
3885	 71.90	0	5401182..5402174	+	330	162452154	mxcF	sce3881	-	isochorismatase
3886	 75.30	+1	5402221..5403066	+	281	162452155	mxcB	sce3882	-	iron utilization protein
3887	 74.77	0	5403079..5403855	+	258	162452156	mxcC	sce3883	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
3888	 72.37	0	5404009..5405007	-	332	162452157	-	sce3884	-	hypothetical protein
3889	 71.85	0	5405004..5406296	-	430	162452158	mxcI	sce3885	-	hypothetical protein
3890	 73.29	0	5406346..5408973	-	875	162452159	mxcH	sce3886	-	TonB-dependent receptor
3891	 69.48	0	5409146..5409358	-	70	162452160	-	sce3887	-	hypothetical protein
3892	 75.51	+1	5409948..5414381	+	1477	162452161	mxcG	sce3888	-	nonribosomal peptide synthetase
3893	 71.20	0	5414427..5415749	+	440	162452162	mxcL	sce3889	-	glutamate-1-semialdehyde 2,1-aminomutase
3894	 74.00	0	5415760..5417013	+	417	162452163	mxcK	sce3890	-	efflux pump
3895	 73.31	0	5417209..5418126	+	305	162452164	-	sce3891	-	trypsin
3896	 71.65	0	5418370..5419773	+	467	162452165	ompA1	sce3892	-	outer membrane protein
3897	 66.67	-1	5419869..5420759	-	296	162452166	-	sce3893	-	hypothetical protein
3898	 67.28	0	5420767..5421252	-	161	162452167	-	sce3894	-	hypothetical protein
3899	 65.78	-1	5421534..5422997	-	487	162452168	-	sce3895	-	hypothetical protein
3900	 69.67	0	5423124..5423522	-	132	162452169	-	sce3896	-	hypothetical protein
3901	 69.64	0	5423593..5423895	-	100	162452170	-	sce3897	-	hypothetical protein
3902	 77.66	+1	5424141..5425322	+	393	162452171	-	sce3898	-	hypothetical protein
3903	 74.29	0	5425367..5426074	+	235	162452172	tatB	sce3899	-	Sec-independent protein translocase TatB
3904	 67.00	0	5426071..5426958	+	295	162452173	tatC	sce3900	-	Sec-independent protein translocase TatC
3905	 71.35	0	5427028..5427966	-	312	162452174	-	sce3901	-	prolipoprotein diacylglyceryl transferase
3906	 68.19	0	5427969..5428559	-	196	162452175	lspA1	sce3902	-	Signal peptidase II
3907	 71.20	0	5428914..5429597	-	227	162452176	lspA2	sce3903	-	Signal peptidase II
3908	 76.71	+1	5429797..5430264	-	155	162452177	-	sce3904	-	putative secreted protein
3909	 74.58	0	5430291..5430644	-	117	162452178	-	sce3905	-	putative secreted protein
3910	 72.20	0	5431280..5433682	+	800	162452179	yprA	sce3906	-	nucleotidyltransferase
3911	 76.53	+1	5433994..5435676	+	560	162452180	-	sce3907	-	protein kinase
3912	 74.04	0	5435722..5436603	+	293	162452181	-	sce3908	-	methyltransferase
3913	 71.23	0	5436697..5437923	-	408	162452182	-	sce3909	-	hypothetical protein
3914	 67.76	0	5438172..5439728	-	518	162452183	-	sce3910	-	hypothetical protein
3915	 76.28	+1	5440219..5441913	-	564	162452184	-	sce3911	-	hypothetical protein
3916	 68.33	0	5442181..5442480	-	99	162452185	-	sce3912	-	putative septum formation initiator protein
3917	 72.63	0	5442824..5448121	+	1765	162452186	-	sce3913	-	protein kinase
3918	 69.14	0	5448404..5450305	+	633	162452187	-	sce3914	-	hypothetical protein
3919	 71.65	0	5450466..5451227	+	253	162452188	nth1	sce3915	-	endonuclease III
3920	 65.02	-1	5451240..5451665	+	141	162452189	-	sce3916	-	hypothetical protein
3921	 75.21	+1	5451716..5452792	-	358	162452190	-	sce3917	-	putative transport system kinase
3922	 77.78	+1	5452859..5453218	-	119	162452191	-	sce3918	-	hypothetical protein
3923	 69.11	0	5453215..5453952	-	245	162452192	ate1	sce3919	-	arginyl-tRNA-protein transferase
3924	 72.28	0	5454382..5454684	+	100	162452193	-	sce3920	-	hypothetical protein
3925	 71.95	0	5454821..5458609	-	1262	162452194	-	sce3921	-	hypothetical protein
3926	 69.04	0	5458871..5460217	-	448	162452195	accC1	sce3922	-	hypothetical protein
3927	 69.68	0	5460239..5460769	-	176	162452196	accB	sce3923	-	acetyl-CoA carboxylase biotin carboxyl carrier protein
3928	 67.95	0	5460809..5461276	-	155	162452197	-	sce3924	-	3-dehydroquinate dehydratase
3929	 64.17	-1	5461273..5461632	-	119	162452198	-	sce3925	-	hypothetical protein
3930	 74.43	0	5462192..5464174	+	660	162452199	aco	sce3926	-	3-isopropylmalate dehydratase large subunit
3931	 73.31	0	5464260..5466335	-	691	162452200	-	sce3927	-	hypothetical protein
3932	 69.85	0	5466360..5467427	-	355	162452201	-	sce3928	-	hypothetical protein
3933	 69.21	0	5467627..5469039	+	470	162452202	betC	sce3929	-	choline sulfatase
3934	 77.10	+1	5469080..5470114	-	344	162452203	-	sce3930	-	hypothetical protein
3935	 71.29	0	5470111..5470521	-	136	162452204	-	sce3931	-	hypothetical protein
3936	 73.25	0	5470518..5471201	-	227	162452205	-	sce3932	-	putative secreted protein
3937	 71.63	0	5471385..5471948	+	187	162452206	-	sce3933	-	hypothetical protein
3938	 67.13	0	5472027..5472242	-	71	162452207	-	sce3934	-	hypothetical protein
3939	 75.06	0	5472564..5473754	-	396	162452208	-	sce3935	-	A/G-specific adenine glycosylase
3940	 72.12	0	5473891..5474679	+	262	162452209	-	sce3936	-	hypothetical protein
3941	 62.33	-2	5474924..5475430	+	168	162452210	-	sce3937	-	hypothetical protein
3942	 69.51	0	5475427..5475918	+	163	162452211	-	sce3938	-	hypothetical protein
3943	 75.04	0	5476078..5477271	+	397	162452212	-	sce3939	-	hypothetical protein
3944	 74.58	0	5477309..5479507	-	732	162452213	-	sce3940	-	sensory box histidine kinase/response regulator hybrid
3945	 72.67	0	5479512..5482043	-	843	162452214	-	sce3941	-	hypothetical protein
3946	 72.39	0	5482326..5483828	+	500	162452215	-	sce3942	-	protein kinase
3947	 72.59	0	5483855..5484934	-	359	162452216	-	sce3943	-	hypothetical protein
3948	 75.98	+1	5485187..5487043	+	618	162452217	-	sce3944	-	protein kinase
3949	 67.05	0	5487544..5487807	+	87	162452218	-	sce3945	-	hypothetical protein
3950	 73.09	0	5487768..5488592	-	274	162452219	-	sce3946	-	hypothetical protein
3951	 75.33	+1	5488745..5490175	-	476	162452220	-	sce3947	-	protein kinase
3952	 72.92	0	5490510..5491964	-	484	162452221	-	sce3948	-	polysaccharide biosynthesis protein, putative
3953	 74.95	0	5492430..5492972	-	180	162452222	-	sce3949	-	hypothetical protein
3954	 70.72	0	5493252..5493572	+	106	162452223	-	sce3950	-	hypothetical protein
3955	 63.22	-1	5493825..5494463	-	212	162452224	-	sce3951	-	hypothetical protein
3956	 73.33	0	5494662..5495816	-	384	162452225	gbd	sce3952	-	alcohol dehydrogenase
3957	 69.16	0	5495813..5497174	-	453	162452226	glnA1	sce3953	-	hypothetical protein
3958	 73.66	0	5497282..5497896	-	204	162452227	-	sce3954	-	hypothetical protein
3959	 72.16	0	5497889..5499745	-	618	162452228	-	sce3955	-	protein kinase
3960	 67.84	0	5499868..5500122	-	84	162452229	-	sce3956	-	hypothetical protein
3961	 65.24	-1	5500798..5501289	+	163	162452230	-	sce3957	-	putative cAMP phosphodiesterase
3962	 64.29	-1	5501407..5501616	-	69	162452231	-	sce3958	-	hypothetical protein
3963	 70.37	0	5501712..5502089	-	125	162452232	-	sce3959	-	hypothetical protein
3964	 65.62	-1	5502326..5502706	+	126	162452233	-	sce3960	-	hypothetical protein
3965	 76.40	+1	5502916..5504169	+	417	162452234	-	sce3961	-	hypothetical protein
3966	 71.43	0	5504528..5506123	+	531	162452235	-	sce3962	-	hypothetical protein
3967	 68.97	0	5506200..5506937	+	245	162452236	-	sce3963	-	putative ABC transport system ATP-binding protein
3968	 75.52	+1	5507100..5507924	-	274	162452237	-	sce3964	-	hypothetical protein
3969	 71.83	0	5508386..5509024	+	212	162452238	-	sce3965	-	putative two-component system response regulator
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.