IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3151	 64.28	-1	4325281..4326537	+	418	162451420	clpX	sce3148	-	ATP-dependent protease ATP-binding subunit
3152	 66.23	-1	4326749..4329241	+	830	162451421	lon3	sce3149	-	endopeptidase LA
3153	 71.32	0	4329289..4330857	+	522	162451422	purH	sce3150	-	IMP cyclohydrolase
3154	 70.86	0	4331623..4332480	+	285	162451423	parA3	sce3151	-	ATPase
3155	 66.42	-1	4332608..4333006	+	132	162451424	-	sce3152	-	hypothetical protein
3156	 66.67	-1	4333232..4333984	+	250	162451425	-	sce3153	-	hypothetical protein
3157	 65.48	-1	4334174..4334680	-	168	162451426	-	sce3154	-	hypothetical protein
3158	 72.23	0	4334885..4336483	+	532	162451427	-	sce3155	-	hypothetical protein
3159	 77.19	+1	4336596..4338524	-	642	162451428	-	sce3156	-	putative secreted protein
3160	 74.37	0	4338640..4340625	-	661	162451429	-	sce3157	-	molybdopterin-containing oxidoreductase catalytic subunit
3161	 74.51	0	4340701..4341516	-	271	162451430	-	sce3158	-	hypothetical protein
3162	 74.83	0	4341833..4342885	-	350	162451431	rluD2	sce3159	-	pseudouridylate synthase/ribosomal large subunit pseudouridine synthase D
3163	 71.19	0	4342973..4344187	-	404	162451432	-	sce3160	-	hypothetical protein
3164	 71.20	0	4344381..4345835	+	484	162451433	glgA2	sce3161	-	hypothetical protein
3165	 76.31	+1	4345997..4346992	+	331	162451434	-	sce3162	-	hypothetical protein
3166	 69.70	0	4346985..4347446	+	153	162451435	-	sce3163	-	hypothetical protein
3167	 74.42	0	4347386..4348894	+	502	162451436	-	sce3164	-	hypothetical protein
3168	 75.40	+1	4349127..4351049	+	640	162451437	-	sce3165	-	hypothetical protein
3169	 73.65	0	4351283..4352713	+	476	162451438	-	sce3166	-	GTP-binding protein HflX
3170	 77.53	+1	4352744..4353010	-	88	162451440	-	sce3167	-	hypothetical protein
3171	 70.57	0	4352997..4353431	+	144	162451439	-	sce3168	-	hypothetical protein
3172	 69.61	0	4353388..4354032	+	214	162451441	-	sce3169	-	hypothetical protein
3173	 79.25	+2	4354228..4354974	-	248	162451442	-	sce3170	-	hypothetical protein
3174	 74.02	0	4355488..4355895	+	135	162451443	-	sce3171	-	putative acyltransferase
3175	 73.36	0	4356054..4357652	-	532	162451444	-	sce3172	-	hypothetical protein
3176	 71.03	0	4358259..4359014	-	251	162451445	rpsA1	sce3173	-	S1 RNA-binding domain-containing protein
3177	 71.71	0	4360219..4360575	-	118	162451446	-	sce3174	-	hypothetical protein
3178	 70.09	0	4360619..4361407	-	262	162451447	-	sce3175	-	hypothetical protein
3179	 68.10	0	4361570..4362961	-	463	162451448	gatA3	sce3176	-	putative amidase
3180	 60.38	-2	4362976..4363341	-	121	162451449	-	sce3177	-	hypothetical protein
3181	 74.49	0	4363371..4366706	-	1111	162451450	-	sce3178	-	hypothetical protein
3182	 66.93	0	4366748..4367497	-	249	162451451	-	sce3179	-	polyketide biosynthesis enoyl-CoA hydratase
3183	 67.44	0	4367499..4368275	-	258	162451452	-	sce3180	-	polyketide biosynthesis enoyl-CoA hydratase
3184	 67.30	0	4368263..4369525	-	420	162451453	-	sce3181	-	hydroxymethylglutaryl-CoA synthase
3185	 70.80	0	4369542..4370774	-	410	162451454	-	sce3182	-	polyketide beta-ketoacyl:acyl carrier protein synthase
3186	 62.65	-2	4370752..4371000	-	82	162451455	acpP2	sce3183	-	acyl carrier protein
3187	 67.25	0	4371003..4372382	-	459	162451456	-	sce3184	-	hypothetical protein
3188	 58.10	-2	4373490..4373804	+	104	162451457	-	sce3185	-	hypothetical protein
3189	 68.08	0	4373801..4374718	+	305	162451458	fabD1	sce3186	-	malonyl CoA-acyl carrier protein transacylase
3190	 66.62	-1	4374706..4376670	+	654	162451459	asnB1	sce3187	-	asparagine synthetase
3191	 70.20	0	4376667..4392107	+	5146	162451460	-	sce3188	-	polyketide synthase
3192	 71.70	0	4392104..4403590	+	3828	162451461	-	sce3189	-	polyketide synthase
3193	 71.96	0	4403593..4414479	+	3628	162451462	-	sce3190	-	polyketide synthase
3194	 71.83	0	4414476..4429688	+	5070	162451463	-	sce3191	-	polyketide synthase
3195	 73.55	0	4429685..4440421	+	3578	162451464	-	sce3192	-	polyketide synthase
3196	 72.09	0	4440441..4458362	+	5973	162451465	-	sce3193	-	polyketide synthase
3197	 68.19	0	4458359..4459735	+	458	162451466	-	sce3194	-	MATE efflux family protein
3198	 69.81	0	4459749..4461851	+	700	162451467	-	sce3195	-	malonyl CoA-acyl carrier protein transacylase
3199	 69.56	0	4462166..4462891	+	241	162451468	-	sce3196	-	hypothetical protein
3200	 68.05	0	4462937..4464595	+	552	162451469	-	sce3197	-	Rhs family carbohydrate-binding protein
3201	 64.06	-1	4464779..4465315	+	178	162451470	-	sce3198	-	hypothetical protein
3202	 75.59	+1	4465312..4468080	+	922	162451471	-	sce3199	-	hypothetical protein
3203	 72.09	0	4468402..4469286	+	294	162451472	-	sce3200	-	hypothetical protein
3204	 70.98	0	4469856..4470992	-	378	162451473	-	sce3201	-	hypothetical protein
3205	 67.00	0	4470989..4471285	-	98	162451474	-	sce3202	-	hypothetical protein
3206	 68.43	0	4471363..4473579	-	738	162451475	-	sce3203	-	hypothetical protein
3207	 66.67	-1	4473920..4474441	+	173	162451476	-	sce3204	-	hypothetical protein
3208	 73.10	0	4474428..4475360	+	310	162451477	-	sce3205	-	hypothetical protein
3209	 70.66	0	4475353..4477380	+	675	162451478	-	sce3206	-	subtilisin like protease
3210	 69.98	0	4477298..4479742	+	814	162451479	-	sce3207	-	two component sensor kinase
3211	 70.03	0	4479739..4481226	+	495	162451480	-	sce3208	-	sigma-54 dependent DNA-binding response regulator
3212	 66.51	-1	4481244..4482524	+	426	162451481	-	sce3209	-	WD-40 repeat-containing protein
3213	 69.11	0	4482587..4487053	+	1488	162451482	-	sce3210	-	WD repeat-containing protein
3214	 69.63	0	4487533..4488579	-	348	162451483	-	sce3211	-	hypothetical protein
3215	 73.08	0	4488576..4489526	-	316	162451484	-	sce3212	-	hypothetical protein
3216	 73.82	0	4490064..4491056	-	330	162451485	-	sce3213	-	hypothetical protein
3217	 72.09	0	4491087..4491695	-	202	162451486	-	sce3214	-	TetR family transcriptional regulator
3218	 65.50	-1	4491830..4492603	-	257	162451487	-	sce3215	-	hypothetical protein
3219	 70.94	0	4492896..4494347	+	483	162451488	-	sce3216	-	hypothetical protein
3220	 80.14	+2	4494358..4497690	+	1110	162451489	-	sce3217	-	serine/threonine-protein kinase
3221	 78.11	+1	4497600..4499189	+	529	162451490	pilR1	sce3218	-	nitrogen regulation protein NR(I)
3222	 73.79	0	4499254..4500573	+	439	162451491	-	sce3219	-	hypothetical protein
3223	 67.87	0	4500870..4502363	-	497	162451492	xynB1	sce3220	-	endo-1,4-beta-glucanase
3224	 72.28	0	4503079..4507587	+	1502	162451493	-	sce3221	-	protein kinase
3225	 69.62	0	4507584..4508057	+	157	162451494	-	sce3222	-	hypothetical protein
3226	 72.08	0	4508139..4509578	-	479	162451495	-	sce3223	-	GntR family transcriptional regulator
3227	 70.24	0	4509582..4510169	-	195	162451496	-	sce3224	-	hypothetical protein
3228	 71.61	0	4510393..4511241	-	282	162451497	-	sce3225	-	putative dehydrogenase
3229	 73.02	0	4511366..4512325	+	319	162451498	-	sce3226	-	LysR family transcriptional regulator
3230	 69.65	0	4512273..4514180	-	635	162451499	-	sce3227	-	hypothetical protein
3231	 75.80	+1	4514373..4515938	+	521	162451500	-	sce3228	-	sigma-54 dependent transcriptional regulator
3232	 78.39	+1	4515935..4519330	+	1131	162451501	-	sce3229	-	protein kinase
3233	 69.46	0	4519353..4520246	-	297	162451502	-	sce3230	-	putative secreted protein
3234	 67.77	0	4520723..4521445	+	240	162451503	-	sce3231	-	hypothetical protein
3235	 73.11	0	4521801..4522685	+	294	162451504	-	sce3232	-	hypothetical protein
3236	 54.92	-2	4523404..4523667	+	87	162451505	-	sce3233	-	hypothetical protein
3237	 70.55	0	4523959..4527051	+	1030	162451506	-	sce3234	-	putative helicase
3238	 69.09	0	4527458..4528693	+	411	162451507	-	sce3235	-	hypothetical protein
3239	 66.67	-1	4528690..4529403	+	237	162451508	-	sce3236	-	hypothetical protein
3240	 69.30	0	4529479..4530276	-	265	162451509	-	sce3237	-	phospholipase D/transphosphatidylase
3241	 69.54	0	4530273..4532153	-	626	162451510	-	sce3238	-	hypothetical protein
3242	 69.81	0	4532153..4535527	-	1124	162451511	-	sce3239	-	superfamily II DNA/RNA helicase
3243	 68.59	0	4535577..4536251	-	224	162451512	-	sce3240	-	no similarity
3244	 68.63	0	4536248..4537519	-	423	162451513	-	sce3241	-	hypothetical protein
3245	 67.93	0	4537606..4541811	-	1401	162451514	-	sce3242	-	hypothetical protein
3246	 73.22	0	4541790..4545434	-	1214	162451515	-	sce3243	-	hypothetical protein
3247	 65.36	-1	4545746..4547587	-	613	162451516	-	sce3244	-	hypothetical protein
3248	 68.42	0	4547652..4547879	-	75	162451517	-	sce3245	-	hypothetical protein
3249	 70.69	0	4548863..4549582	+	239	162451518	-	sce3246	-	hypothetical protein
3250	 64.36	-1	4549579..4550184	+	201	162451519	-	sce3247	-	hypothetical protein
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.