IslandPathversion 1.0

IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 71.02 STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2838	 76.06	+1	3867548..3868558	+	336	162451107	-	sce2835	-	hypothetical protein
2839	 74.91	0	3868558..3870522	+	654	162451108	-	sce2836	-	hypothetical protein
2840	 74.42	0	3870589..3871452	+	287	162451109	-	sce2837	-	hypothetical protein
2841	 70.14	0	3871505..3873919	+	804	162451110	lon2	sce2838	-	ATP-dependent protease La
2842	 78.39	+1	3873990..3878033	-	1347	162451111	-	sce2839	-	exodeoxyribonuclease V beta chain
2843	 79.41	+2	3878030..3881167	-	1045	162451112	-	sce2840	-	hypothetical protein
2844	 72.32	0	3881690..3882520	-	276	162451113	-	sce2841	-	hypothetical protein
2845	 71.15	0	3882688..3883623	-	311	162451115	-	sce2842	-	hypothetical protein
2846	 68.99	0	3883517..3884935	+	472	162451114	-	sce2843	-	putative secreted protein
2847	 73.74	0	3885056..3886285	+	409	162451116	-	sce2844	-	hypothetical protein
2848	 69.62	0	3886362..3887747	-	461	162451117	-	sce2845	-	IS4 family transposase
2849	 74.72	0	3887952..3888920	-	322	162451118	ctaA	sce2846	-	cytochrome aa3 controlling protein
2850	 70.75	0	3889141..3890316	+	391	162451119	-	sce2847	-	response regulator/GGDEF domain-containing protein
2851	 76.02	+1	3890339..3891802	+	487	162451120	-	sce2848	-	hypothetical protein
2852	 71.05	0	3891886..3893277	+	463	162451121	-	sce2849	-	outer membrane efflux protein
2853	 68.81	0	3893431..3894222	+	263	162451122	-	sce2850	-	heme exporter protein C
2854	 67.74	0	3894227..3894505	+	92	162451123	-	sce2851	-	hypothetical protein
2855	 65.97	-1	3894505..3894648	+	47	162451124	-	sce2852	-	hypothetical protein
2856	 66.49	-1	3894728..3895867	+	379	162451125	-	sce2853	-	Acyl-CoA dehydrogenase
2857	 71.84	0	3895890..3896855	-	321	162451126	-	sce2854	-	hypothetical protein
2858	 72.95	0	3897592..3898800	+	402	162451127	pp2c5	sce2855	-	phosphoprotein phosphatase
2859	 76.31	+1	3898797..3899522	+	241	162451128	yqcB	sce2856	-	pseudouridylate synthase/tRNA pseudouridine synthase C
2860	 76.72	+1	3899488..3900591	-	367	162451129	-	sce2857	-	mandelate racemase/muconate lactonizing enzyme family protein
2861	 72.71	0	3900617..3901228	-	203	162451130	-	sce2858	-	ahpC/TSA family protein
2862	 65.38	-1	3901249..3901716	-	155	162451131	fabZ	sce2859	-	(3R)-hydroxymyristoyl-
2863	 67.00	0	3901758..3902354	-	198	162451132	-	sce2860	-	outer membrane protein, putative
2864	 73.96	0	3902403..3903293	-	296	162451133	-	sce2861	-	dumpy
2865	 73.38	0	3903599..3904774	-	391	162451134	argJ	sce2862	-	glutamate N-acetyltransferase
2866	 68.83	0	3904910..3906526	+	538	162451135	-	sce2863	-	hypothetical protein
2867	 75.26	+1	3906536..3907396	+	286	162451136	-	sce2864	-	hypothetical protein
2868	 75.93	+1	3907564..3909678	+	704	162451137	-	sce2865	-	hypothetical protein
2869	 70.98	0	3909758..3911218	+	486	162451138	-	sce2866	-	protein kinase
2870	 71.09	0	3911390..3912745	+	451	162451139	-	sce2867	-	hypothetical protein
2871	 62.69	-2	3913658..3914059	+	133	162451140	-	sce2868	-	putative secreted protein
2872	 66.15	-1	3914994..3915962	+	322	162451141	-	sce2869	-	putative secreted protein
2873	 72.47	0	3916014..3916823	-	269	162451142	-	sce2870	-	fumarylacetoacetase
2874	 76.76	+1	3916959..3917582	-	207	162451143	-	sce2871	-	hypothetical protein
2875	 76.23	+1	3917712..3918380	+	222	162451144	-	sce2872	-	hypothetical protein
2876	 70.94	0	3918408..3919016	-	202	162451145	yihX	sce2873	-	haloacid dehalogenase-like hydrolase family protein
2877	 70.25	0	3919356..3920555	+	399	162451146	-	sce2874	-	hypothetical protein
2878	 75.26	+1	3920648..3921706	-	352	162451147	-	sce2875	-	phosphatidylinositol transfer protein, membrane-associated
2879	 72.85	0	3921761..3922957	-	398	162451148	-	sce2876	-	putative hydroxylase
2880	 72.26	0	3923075..3924523	-	482	162451149	-	sce2877	-	serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member
2881	 67.17	0	3924636..3925433	-	265	162451150	-	sce2878	-	putative secreted protein
2882	 73.45	0	3925779..3926486	-	235	162451151	-	sce2879	-	hypothetical protein
2883	 66.75	-1	3926609..3927841	-	410	162451152	bioF1	sce2880	-	8-amino-7-oxononanoate synthase
2884	 67.62	0	3928688..3930049	+	453	162451153	-	sce2881	-	sigma-54 dependent DNA-binding response regulator
2885	 68.79	0	3930136..3931455	+	439	162451154	phoH1	sce2882	-	PhoH family protein
2886	 78.89	+1	3931552..3932664	+	370	162451155	-	sce2883	-	hypothetical protein
2887	 68.08	0	3932972..3933184	+	70	162451156	-	sce2884	-	hypothetical protein
2888	 77.61	+1	3933198..3935372	-	724	162451157	recQ	sce2885	-	ATP-dependent DNA helicase RecQ
2889	 68.98	0	3935466..3936158	-	230	162451158	-	sce2886	-	hypothetical protein
2890	 69.94	0	3936418..3936936	-	172	162451159	-	sce2887	-	hypothetical protein
2891	 75.88	+1	3937411..3938007	-	198	162451160	fsxA	sce2888	-	membrane protein, FxsA-like
2892	 69.84	0	3938243..3939787	+	514	162451161	kamD	sce2889	-	Beta-lysine 5,6-aminomutase, alpha subunit
2893	 72.97	0	3939816..3940307	+	163	162451162	-	sce2890	-	hypothetical protein
2894	 69.12	0	3940625..3941359	+	244	162451163	kamE	sce2891	-	Beta-lysine 5,6-aminomutase, beta subunit
2895	 78.55	+1	3941364..3942137	-	257	162451164	-	sce2892	-	DnaJ molecular chaperone
2896	 68.68	0	3942391..3943236	+	281	162451165	-	sce2893	-	putative short-chain dehydrogenases
2897	 73.39	0	3943500..3945254	+	584	162451166	-	sce2894	-	Putetive secreted protein
2898	 68.65	0	3945299..3945802	+	167	162451167	-	sce2895	-	hypothetical protein
2899	 77.75	+1	3945822..3947039	+	405	162451168	-	sce2896	-	hypothetical protein
2900	 69.02	0	3947236..3948126	+	296	162451169	-	sce2897	-	hypothetical protein
2901	 70.77	0	3948492..3949490	+	332	162451170	ctaB	sce2898	-	Protoheme IX farnesyltransferase
2902	 71.16	0	3949543..3950277	+	244	162451171	-	sce2899	-	lipoprotein
2903	 79.07	+1	3950294..3954799	-	1501	162451172	-	sce2900	-	protein kinase
2904	 72.48	0	3954841..3955614	-	257	162451173	-	sce2901	-	hypothetical protein
2905	 67.78	0	3955692..3956588	+	298	162451174	-	sce2902	-	GGDEF domain-containing protein
2906	 70.32	0	3958176..3959624	-	482	162451175	-	sce2903	-	cytochrome c family protein
2907	 70.67	0	3959636..3961360	-	574	162451176	-	sce2904	-	hypothetical protein
2908	 66.67	-1	3961540..3962301	-	253	162451177	-	sce2905	-	hypothetical protein
2909	 66.44	-1	3962573..3963451	-	292	162451178	-	sce2906	-	hypothetical protein
2910	 62.57	-2	3963525..3964451	-	308	162451179	-	sce2907	-	hypothetical protein
2911	 71.51	0	3964875..3966236	-	453	162451180	ftsY	sce2908	-	cell division membrane protein
2912	 76.97	+1	3966381..3968156	-	591	162451181	-	sce2909	-	hypothetical protein
2913	 67.42	0	3968508..3969431	+	307	162451182	cpcE	sce2910	-	hypothetical protein
2914	 67.36	0	3969508..3970377	+	289	162451183	-	sce2911	-	hypothetical protein
2915	 76.52	+1	3970618..3971175	-	185	162451184	-	sce2912	-	hypothetical protein
2916	 69.25	0	3971183..3972034	-	283	162451185	-	sce2913	-	hypothetical protein
2917	 65.20	-1	3972663..3974369	+	568	162451186	-	sce2914	-	hypothetical protein
2918	 65.89	-1	3974455..3978324	+	1289	162451187	ybgF	sce2915	-	hypothetical protein
2919	 66.33	-1	3978324..3979817	+	497	162451188	-	sce2916	-	hypothetical protein
2920	 66.67	-1	3980312..3980584	+	90	162451189	-	sce2917	-	hypothetical protein
2921	 69.21	0	3980675..3982720	+	681	162451190	-	sce2918	-	FHA domain-containing protein
2922	 64.75	-1	3983248..3984135	+	295	162451191	-	sce2919	-	TPR repeat-containing protein
2923	 69.88	0	3984212..3989536	+	1774	162451192	-	sce2920	-	TPR repeat-containing protein
2924	 67.98	0	3989487..3995732	+	2081	162451193	-	sce2921	-	TPR repeat-containing protein
2925	 69.60	0	3995922..3997556	+	544	162451194	-	sce2922	-	protein kinase
2926	 76.10	+1	3997605..4001495	-	1296	162451195	-	sce2923	-	protein kinase
2927	 75.00	0	4001874..4003409	+	511	162451196	-	sce2924	-	hypothetical protein
2928	 76.90	+1	4003406..4004314	+	302	162451197	-	sce2925	-	hypothetical protein
2929	 73.31	0	4004419..4006134	+	571	162451198	-	sce2926	-	hypothetical protein
2930	 80.04	+2	4006774..4009218	-	814	162451199	-	sce2927	-	hypothetical protein
2931	 71.86	0	4009326..4009922	-	198	162451200	-	sce2928	-	hypothetical protein
2932	 69.75	0	4009943..4011598	-	551	162451201	-	sce2929	-	hypothetical protein
2933	 73.77	0	4011633..4013336	+	567	162451202	-	sce2930	-	hypothetical protein
2934	 71.79	0	4013333..4014697	+	454	162451203	-	sce2931	-	hypothetical protein
2935	 71.08	0	4015113..4016765	+	550	162451204	-	sce2932	-	hypothetical protein
2936	 77.82	+1	4016812..4017528	-	238	162451205	-	sce2933	-	hypothetical protein
2937	 75.70	+1	4018076..4021663	+	1195	162451206	-	sce2934	-	protein kinase
71.02	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.