IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2771	 68.64	0	3774249..3775463	-	404	162451040	-	sce2768	-	putative secreted protein
2772	 65.77	-1	3775712..3776824	+	370	162451041	adh2	sce2769	-	class III alcohol dehydrogenase
2773	 74.40	0	3777016..3778593	+	525	162451042	pepA2	sce2770	-	putative aminopeptidase
2774	 68.10	0	3779025..3779513	+	162	162451043	-	sce2771	-	hypothetical protein
2775	 70.96	0	3779629..3781350	-	573	162451044	-	sce2772	-	hypothetical protein
2776	 74.50	0	3781383..3782276	-	297	162451045	-	sce2773	-	LysR family transcriptional regulator
2777	 71.58	0	3782411..3783652	-	413	162451046	-	sce2774	-	hypothetical protein
2778	 77.80	+1	3783730..3788310	-	1526	162451047	-	sce2775	-	hypothetical protein
2779	 67.25	0	3788531..3788872	+	113	162451048	-	sce2776	-	hypothetical protein
2780	 69.82	0	3788900..3789787	-	295	162451049	dam	sce2777	-	site-specific DNA-methyltransferase
2781	 75.62	+1	3790343..3791314	+	323	162451050	-	sce2778	-	hypothetical protein
2782	 75.53	+1	3791365..3792075	-	236	162451051	-	sce2779	-	mutT/nudix family protein
2783	 64.65	-1	3793044..3793340	+	98	162451052	-	sce2780	-	GroES-like protein
2784	 69.15	0	3793409..3795097	+	562	162451053	-	sce2781	-	GroEL like chaperone
2785	 67.73	0	3795198..3795950	+	250	162451054	-	sce2782	-	hypothetical protein
2786	 69.66	0	3795955..3796722	+	255	162451055	pdeX	sce2783	-	3',5'-cyclic-nucleotide phosphodiesterase
2787	 66.91	0	3796974..3797792	-	272	162451056	pp2c4	sce2784	-	phosphoprotein phosphatase
2788	 76.98	+1	3798031..3799668	-	545	162451057	-	sce2785	-	hypothetical protein
2789	 70.84	0	3799673..3801277	-	534	162451058	speE1	sce2786	-	spermidine synthase
2790	 72.03	0	3801385..3802857	+	490	162451059	-	sce2787	-	putative secreted protein
2791	 66.38	-1	3803126..3803476	+	116	162451060	-	sce2788	-	hypothetical protein
2792	 76.06	+1	3803633..3804739	+	368	162451061	-	sce2789	-	hypothetical protein
2793	 78.36	+1	3805279..3806706	+	475	162451062	-	sce2790	-	subtilisin-like serine protease
2794	 73.22	0	3806916..3809279	+	787	162451063	-	sce2791	-	sensor histidine kinase
2795	 73.25	0	3809276..3810886	+	536	162451064	-	sce2792	-	sigma-54 dependent DNA-binding response regulator
2796	 68.97	0	3810948..3812249	-	433	162451065	rkpK	sce2793	-	hypothetical protein
2797	 71.98	0	3812435..3814147	-	570	162451066	-	sce2794	-	putative secreted protein
2798	 68.94	0	3814204..3815523	-	439	162451067	-	sce2795	-	hypothetical protein
2799	 67.65	0	3815748..3816152	-	134	162451068	-	sce2796	-	hypothetical protein
2800	 70.09	0	3816300..3817058	-	252	162451069	-	sce2797	-	hypothetical protein
2801	 74.02	0	3817147..3818343	-	398	162451070	-	sce2798	-	protein kinase
2802	 74.53	0	3818419..3819156	+	245	162451071	-	sce2799	-	hypothetical protein
2803	 67.34	0	3819490..3820530	+	346	162451072	-	sce2800	-	hypothetical protein
2804	 66.18	-1	3820778..3822019	-	413	162451073	-	sce2801	-	hypothetical protein
2805	 77.59	+1	3822283..3826776	+	1497	162451074	lhr1	sce2802	-	putative ATP-dependent helicase, N-terminal fragment
2806	 70.95	0	3826993..3827997	+	334	162451075	-	sce2803	-	putative secreted protein
2807	 73.76	0	3828164..3829432	+	422	162451076	arcA	sce2804	-	RND family efflux transporter MFP subunit
2808	 70.95	0	3829434..3832751	+	1105	162451077	acrB	sce2805	-	hypothetical protein
2809	 74.05	0	3832779..3833171	-	130	162451078	-	sce2806	-	hypothetical protein
2810	 70.18	0	3833284..3834252	+	322	162451079	-	sce2807	-	hypothetical protein
2811	 75.38	+1	3834873..3836192	-	439	162451080	yieA	sce2808	-	lysine--tRNA ligase
2812	 69.67	0	3836428..3838689	+	753	162451081	-	sce2809	-	hypothetical protein
2813	 75.96	+1	3838842..3839336	-	164	162451082	-	sce2810	-	putative secreted protein
2814	 68.49	0	3839381..3840037	-	218	162451083	-	sce2811	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2815	 75.57	+1	3840027..3841700	-	557	162451084	-	sce2812	-	hypothetical protein
2816	 76.58	+1	3841738..3842463	-	241	162451085	hisA	sce2813	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
2817	 76.02	+1	3842547..3843551	-	334	162451086	-	sce2814	-	hypothetical protein
2818	 74.89	0	3843616..3845148	-	510	162451087	-	sce2815	-	protein kinase
2819	 72.21	0	3845385..3846377	-	330	162451088	-	sce2816	-	hypothetical protein
2820	 69.26	0	3846824..3847555	+	243	162451089	-	sce2817	-	hypothetical protein
2821	 68.12	0	3847573..3848121	+	182	162451090	-	sce2818	-	putative nucleoside-triphosphatase
2822	 66.39	-1	3848349..3849446	+	365	162451091	-	sce2819	-	putative oxidoreductase
2823	 72.53	0	3849522..3850289	+	255	162451092	-	sce2820	-	hypothetical protein
2824	 68.13	0	3850366..3850842	-	158	162451093	-	sce2821	-	hypothetical protein
2825	 74.32	0	3851224..3852177	+	317	162451094	-	sce2822	-	sensory transduction histidine kinase
2826	 74.04	0	3852197..3852874	-	225	162451095	hisH	sce2823	-	amidotransferase
2827	 68.55	0	3852878..3853567	-	229	162451096	hisB	sce2824	-	hypothetical protein
2828	 75.88	+1	3853634..3855250	+	538	162451097	-	sce2825	-	protein kinase
2829	 73.03	0	3855247..3856362	+	371	162451098	-	sce2826	-	hypothetical protein
2830	 72.83	0	3856359..3857267	+	302	162451099	-	sce2827	-	putative secreted protein
2831	 73.74	0	3857756..3857854	+	32	162451100	-	sce2828	-	hypothetical protein
2832	 71.66	0	3858063..3858623	+	186	162451101	-	sce2829	-	hypothetical protein
2833	 69.08	0	3858620..3858868	+	82	162451102	-	sce2830	-	hypothetical protein
2834	 68.93	0	3859809..3860957	-	382	162451103	-	sce2831	-	hypothetical protein
2835	 71.97	0	3862560..3863408	+	282	162451104	-	sce2832	-	hypothetical protein
2836	 75.08	0	3863427..3865541	-	704	162451105	-	sce2833	-	hypothetical protein
2837	 75.80	+1	3865612..3867516	-	634	162451106	mopB2	sce2834	-	hypothetical protein
2838	 76.06	+1	3867548..3868558	+	336	162451107	-	sce2835	-	hypothetical protein
2839	 74.91	0	3868558..3870522	+	654	162451108	-	sce2836	-	hypothetical protein
2840	 74.42	0	3870589..3871452	+	287	162451109	-	sce2837	-	hypothetical protein
2841	 70.14	0	3871505..3873919	+	804	162451110	lon2	sce2838	-	ATP-dependent protease La
2842	 78.39	+1	3873990..3878033	-	1347	162451111	-	sce2839	-	exodeoxyribonuclease V beta chain
2843	 79.41	+2	3878030..3881167	-	1045	162451112	-	sce2840	-	hypothetical protein
2844	 72.32	0	3881690..3882520	-	276	162451113	-	sce2841	-	hypothetical protein
2845	 71.15	0	3882688..3883623	-	311	162451115	-	sce2842	-	hypothetical protein
2846	 68.99	0	3883517..3884935	+	472	162451114	-	sce2843	-	putative secreted protein
2847	 73.74	0	3885056..3886285	+	409	162451116	-	sce2844	-	hypothetical protein
2848	 69.62	0	3886362..3887747	-	461	162451117	-	sce2845	-	IS4 family transposase
2849	 74.72	0	3887952..3888920	-	322	162451118	ctaA	sce2846	-	cytochrome aa3 controlling protein
2850	 70.75	0	3889141..3890316	+	391	162451119	-	sce2847	-	response regulator/GGDEF domain-containing protein
2851	 76.02	+1	3890339..3891802	+	487	162451120	-	sce2848	-	hypothetical protein
2852	 71.05	0	3891886..3893277	+	463	162451121	-	sce2849	-	outer membrane efflux protein
2853	 68.81	0	3893431..3894222	+	263	162451122	-	sce2850	-	heme exporter protein C
2854	 67.74	0	3894227..3894505	+	92	162451123	-	sce2851	-	hypothetical protein
2855	 65.97	-1	3894505..3894648	+	47	162451124	-	sce2852	-	hypothetical protein
2856	 66.49	-1	3894728..3895867	+	379	162451125	-	sce2853	-	Acyl-CoA dehydrogenase
2857	 71.84	0	3895890..3896855	-	321	162451126	-	sce2854	-	hypothetical protein
2858	 72.95	0	3897592..3898800	+	402	162451127	pp2c5	sce2855	-	phosphoprotein phosphatase
2859	 76.31	+1	3898797..3899522	+	241	162451128	yqcB	sce2856	-	pseudouridylate synthase/tRNA pseudouridine synthase C
2860	 76.72	+1	3899488..3900591	-	367	162451129	-	sce2857	-	mandelate racemase/muconate lactonizing enzyme family protein
2861	 72.71	0	3900617..3901228	-	203	162451130	-	sce2858	-	ahpC/TSA family protein
2862	 65.38	-1	3901249..3901716	-	155	162451131	fabZ	sce2859	-	(3R)-hydroxymyristoyl-
2863	 67.00	0	3901758..3902354	-	198	162451132	-	sce2860	-	outer membrane protein, putative
2864	 73.96	0	3902403..3903293	-	296	162451133	-	sce2861	-	dumpy
2865	 73.38	0	3903599..3904774	-	391	162451134	argJ	sce2862	-	glutamate N-acetyltransferase
2866	 68.83	0	3904910..3906526	+	538	162451135	-	sce2863	-	hypothetical protein
2867	 75.26	+1	3906536..3907396	+	286	162451136	-	sce2864	-	hypothetical protein
2868	 75.93	+1	3907564..3909678	+	704	162451137	-	sce2865	-	hypothetical protein
2869	 70.98	0	3909758..3911218	+	486	162451138	-	sce2866	-	protein kinase
2870	 71.09	0	3911390..3912745	+	451	162451139	-	sce2867	-	hypothetical protein
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.