IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2729	 79.08	+1	3699748..3700029	+	93	162450998	-	sce2726	-	hypothetical protein
2730	 76.87	+1	3700026..3703034	+	1002	162450999	-	sce2727	-	two-component system sensor protein
2731	 65.87	-1	3703356..3704735	+	459	162451000	mtbA	sce2728	-	major facilitator superfamily permease/putative sugar transporter
2732	 67.57	0	3705521..3707065	+	514	162451001	-	sce2729	-	hypothetical protein
2733	 73.55	0	3707518..3711849	-	1443	162451002	-	sce2730	-	protein kinase
2734	 66.19	-1	3712236..3713708	+	490	162451003	-	sce2731	-	hypothetical protein
2735	 60.71	-2	3713858..3716407	-	849	162451004	-	sce2732	-	putative cell surface protein
2736	 73.36	0	3716799..3719366	-	855	162451005	-	sce2733	-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
2737	 73.60	0	3719363..3720862	-	499	162451006	ubiE2	sce2734	-	ubiquinone/menaquinone biosynthesis methyltransferase ubiE
2738	 70.24	0	3720988..3721491	+	167	162451007	-	sce2735	-	hypothetical protein
2739	 73.26	0	3721493..3722857	+	454	162451008	czcB1	sce2736	-	CzcB family heavy metal efflux protein
2740	 71.68	0	3722868..3725999	+	1043	162451009	czcA1	sce2737	-	CzcA family cobalt/zinc/cadmium efflux transporter permease
2741	 75.13	0	3726003..3726581	+	192	162451010	tlpA	sce2738	-	thiol:disulfide interchange protein tlpA
2742	 73.30	0	3726594..3728162	-	522	162451011	-	sce2739	-	PE_PGRS family protein
2743	 77.94	+1	3728315..3729547	-	410	162451012	-	sce2740	-	hypothetical protein
2744	 68.72	0	3729716..3731614	+	632	162451013	-	sce2741	-	hypothetical protein
2745	 73.56	0	3731667..3732710	-	347	162451014	-	sce2742	-	hypothetical protein
2746	 67.31	0	3733714..3736512	+	932	162451015	-	sce2743	-	putative secreted protein
2747	 79.69	+2	3736825..3738198	-	457	162451016	-	sce2744	-	mucin
2748	 73.44	0	3738191..3738928	-	245	162451017	-	sce2745	-	RNA polymerase sigma factor
2749	 73.67	0	3739094..3744235	+	1713	162451018	-	sce2746	-	protein kinase
2750	 71.56	0	3744256..3744807	-	183	162451019	-	sce2747	-	hypothetical protein
2751	 77.49	+1	3744928..3747237	+	769	162451020	-	sce2748	-	hypothetical protein
2752	 71.99	0	3747303..3747659	+	118	162451021	-	sce2749	-	hypothetical protein
2753	 68.79	0	3747672..3748190	+	172	162451022	-	sce2750	-	hypothetical protein
2754	 67.80	0	3748228..3748935	-	235	162451023	-	sce2751	-	putative secreted protein
2755	 72.80	0	3750055..3751341	-	428	162451024	-	sce2752	-	hypothetical protein
2756	 74.98	0	3751338..3755822	-	1494	162451025	-	sce2753	-	protein kinase
2757	 67.36	0	3756321..3758054	+	577	162451026	-	sce2754	-	putative oxidoreductase
2758	 63.51	-1	3758095..3758379	+	94	162451027	fdxE	sce2755	-	putative ferredoxin
2759	 76.31	+1	3758401..3759396	+	331	162451028	-	sce2756	-	hypothetical protein
2760	 69.79	0	3759401..3760840	+	479	162451029	-	sce2757	-	ABC transporter, substrate binding protein
2761	 73.38	0	3760837..3761760	+	307	162451030	-	sce2758	-	putative ABC transporter permease protein
2762	 74.20	0	3761757..3762605	+	282	162451031	-	sce2759	-	ABC transporter ATP-binding protein
2763	 70.66	0	3762736..3763161	+	141	162451032	-	sce2760	-	hypothetical protein
2764	 71.95	0	3763394..3765778	+	794	162451033	-	sce2761	-	two-component sensor histidine kinase
2765	 72.91	0	3766104..3767912	+	602	162451034	-	sce2762	-	putative membrane bound zinc metallopeptidase
2766	 76.17	+1	3768415..3769551	+	378	162451035	-	sce2763	-	putative D-alanine--D-alanine ligase A
2767	 75.78	+1	3769548..3770930	+	460	162451036	-	sce2764	-	hypothetical protein
2768	 72.51	0	3770975..3772018	-	347	162451038	-	sce2765	-	serine/threonine protein kinase
2769	 70.22	0	3772017..3772607	+	196	162451037	-	sce2766	-	hypothetical protein
2770	 73.60	0	3773346..3774239	+	297	162451039	-	sce2767	-	protein kinase
2771	 68.64	0	3774249..3775463	-	404	162451040	-	sce2768	-	putative secreted protein
2772	 65.77	-1	3775712..3776824	+	370	162451041	adh2	sce2769	-	class III alcohol dehydrogenase
2773	 74.40	0	3777016..3778593	+	525	162451042	pepA2	sce2770	-	putative aminopeptidase
2774	 68.10	0	3779025..3779513	+	162	162451043	-	sce2771	-	hypothetical protein
2775	 70.96	0	3779629..3781350	-	573	162451044	-	sce2772	-	hypothetical protein
2776	 74.50	0	3781383..3782276	-	297	162451045	-	sce2773	-	LysR family transcriptional regulator
2777	 71.58	0	3782411..3783652	-	413	162451046	-	sce2774	-	hypothetical protein
2778	 77.80	+1	3783730..3788310	-	1526	162451047	-	sce2775	-	hypothetical protein
2779	 67.25	0	3788531..3788872	+	113	162451048	-	sce2776	-	hypothetical protein
2780	 69.82	0	3788900..3789787	-	295	162451049	dam	sce2777	-	site-specific DNA-methyltransferase
2781	 75.62	+1	3790343..3791314	+	323	162451050	-	sce2778	-	hypothetical protein
2782	 75.53	+1	3791365..3792075	-	236	162451051	-	sce2779	-	mutT/nudix family protein
2783	 64.65	-1	3793044..3793340	+	98	162451052	-	sce2780	-	GroES-like protein
2784	 69.15	0	3793409..3795097	+	562	162451053	-	sce2781	-	GroEL like chaperone
2785	 67.73	0	3795198..3795950	+	250	162451054	-	sce2782	-	hypothetical protein
2786	 69.66	0	3795955..3796722	+	255	162451055	pdeX	sce2783	-	3',5'-cyclic-nucleotide phosphodiesterase
2787	 66.91	0	3796974..3797792	-	272	162451056	pp2c4	sce2784	-	phosphoprotein phosphatase
2788	 76.98	+1	3798031..3799668	-	545	162451057	-	sce2785	-	hypothetical protein
2789	 70.84	0	3799673..3801277	-	534	162451058	speE1	sce2786	-	spermidine synthase
2790	 72.03	0	3801385..3802857	+	490	162451059	-	sce2787	-	putative secreted protein
2791	 66.38	-1	3803126..3803476	+	116	162451060	-	sce2788	-	hypothetical protein
2792	 76.06	+1	3803633..3804739	+	368	162451061	-	sce2789	-	hypothetical protein
2793	 78.36	+1	3805279..3806706	+	475	162451062	-	sce2790	-	subtilisin-like serine protease
2794	 73.22	0	3806916..3809279	+	787	162451063	-	sce2791	-	sensor histidine kinase
2795	 73.25	0	3809276..3810886	+	536	162451064	-	sce2792	-	sigma-54 dependent DNA-binding response regulator
2796	 68.97	0	3810948..3812249	-	433	162451065	rkpK	sce2793	-	hypothetical protein
2797	 71.98	0	3812435..3814147	-	570	162451066	-	sce2794	-	putative secreted protein
2798	 68.94	0	3814204..3815523	-	439	162451067	-	sce2795	-	hypothetical protein
2799	 67.65	0	3815748..3816152	-	134	162451068	-	sce2796	-	hypothetical protein
2800	 70.09	0	3816300..3817058	-	252	162451069	-	sce2797	-	hypothetical protein
2801	 74.02	0	3817147..3818343	-	398	162451070	-	sce2798	-	protein kinase
2802	 74.53	0	3818419..3819156	+	245	162451071	-	sce2799	-	hypothetical protein
2803	 67.34	0	3819490..3820530	+	346	162451072	-	sce2800	-	hypothetical protein
2804	 66.18	-1	3820778..3822019	-	413	162451073	-	sce2801	-	hypothetical protein
2805	 77.59	+1	3822283..3826776	+	1497	162451074	lhr1	sce2802	-	putative ATP-dependent helicase, N-terminal fragment
2806	 70.95	0	3826993..3827997	+	334	162451075	-	sce2803	-	putative secreted protein
2807	 73.76	0	3828164..3829432	+	422	162451076	arcA	sce2804	-	RND family efflux transporter MFP subunit
2808	 70.95	0	3829434..3832751	+	1105	162451077	acrB	sce2805	-	hypothetical protein
2809	 74.05	0	3832779..3833171	-	130	162451078	-	sce2806	-	hypothetical protein
2810	 70.18	0	3833284..3834252	+	322	162451079	-	sce2807	-	hypothetical protein
2811	 75.38	+1	3834873..3836192	-	439	162451080	yieA	sce2808	-	lysine--tRNA ligase
2812	 69.67	0	3836428..3838689	+	753	162451081	-	sce2809	-	hypothetical protein
2813	 75.96	+1	3838842..3839336	-	164	162451082	-	sce2810	-	putative secreted protein
2814	 68.49	0	3839381..3840037	-	218	162451083	-	sce2811	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2815	 75.57	+1	3840027..3841700	-	557	162451084	-	sce2812	-	hypothetical protein
2816	 76.58	+1	3841738..3842463	-	241	162451085	hisA	sce2813	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
2817	 76.02	+1	3842547..3843551	-	334	162451086	-	sce2814	-	hypothetical protein
2818	 74.89	0	3843616..3845148	-	510	162451087	-	sce2815	-	protein kinase
2819	 72.21	0	3845385..3846377	-	330	162451088	-	sce2816	-	hypothetical protein
2820	 69.26	0	3846824..3847555	+	243	162451089	-	sce2817	-	hypothetical protein
2821	 68.12	0	3847573..3848121	+	182	162451090	-	sce2818	-	putative nucleoside-triphosphatase
2822	 66.39	-1	3848349..3849446	+	365	162451091	-	sce2819	-	putative oxidoreductase
2823	 72.53	0	3849522..3850289	+	255	162451092	-	sce2820	-	hypothetical protein
2824	 68.13	0	3850366..3850842	-	158	162451093	-	sce2821	-	hypothetical protein
2825	 74.32	0	3851224..3852177	+	317	162451094	-	sce2822	-	sensory transduction histidine kinase
2826	 74.04	0	3852197..3852874	-	225	162451095	hisH	sce2823	-	amidotransferase
2827	 68.55	0	3852878..3853567	-	229	162451096	hisB	sce2824	-	hypothetical protein
2828	 75.88	+1	3853634..3855250	+	538	162451097	-	sce2825	-	protein kinase
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.