IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2178	 67.72	0	2936739..2938256	-	505	162450447	-	sce2175	-	PE_PGRS family protein
2179	 72.85	0	2938643..2939644	-	333	162450448	-	sce2176	-	LysR family transcriptional regulator
2180	 74.05	0	2939657..2940739	+	360	162450449	-	sce2177	-	hypothetical protein
2181	 68.30	0	2940964..2942001	-	345	162450450	-	sce2178	-	hypothetical protein
2182	 68.98	0	2942834..2943049	-	71	162450451	-	sce2179	-	hypothetical protein
2183	 67.55	0	2943128..2944033	+	301	162450452	-	sce2180	-	hypothetical protein
2184	 73.09	0	2944347..2944751	+	134	162450453	-	sce2181	-	hypothetical protein
2185	 71.06	0	2944992..2946107	+	371	162450454	chsA	sce2182	-	naringenin-chalcone synthase
2186	 70.66	0	2946112..2946837	+	241	162450455	ubiG2	sce2183	-	3-demethylubiquinone-9 3-O-methyltransferase
2187	 76.89	+1	2946834..2947997	+	387	162450456	-	sce2184	-	putative electron transfer oxidoreductase
2188	 74.47	0	2948111..2948815	+	234	162450457	-	sce2185	-	ECF family RNA polymerase sigma factor
2189	 79.63	+2	2948812..2950053	+	413	162450458	-	sce2186	-	hypothetical protein
2190	 70.25	0	2950211..2951353	+	380	162450459	-	sce2187	-	hypothetical protein
2191	 67.04	0	2951700..2953049	-	449	162450460	xysA	sce2188	-	endo-1,4-beta-xylanase
2192	 68.20	0	2953428..2954276	-	282	162450461	-	sce2189	-	hypothetical protein
2193	 71.69	0	2954741..2955457	+	238	162450462	-	sce2190	-	hypothetical protein
2194	 69.88	0	2955837..2957144	+	435	162450463	cyc2	sce2191	-	cytochrome P450 CYP262A1
2195	 66.84	-1	2957227..2958360	-	377	162450464	-	sce2192	-	hypothetical protein
2196	 68.42	0	2958372..2958542	-	56	162450465	-	sce2193	-	hypothetical protein
2197	 76.25	+1	2959015..2962362	-	1115	162450466	-	sce2194	-	hypothetical protein
2198	 65.54	-1	2962428..2963048	-	206	162450467	gst7	sce2195	-	putative glutathione transferase
2199	 67.47	0	2963129..2964124	-	331	162450468	-	sce2196	-	hypothetical protein
2200	 67.22	0	2964863..2965408	+	181	162450469	-	sce2197	-	hypothetical protein
2201	 69.72	0	2965595..2965954	+	119	162450470	-	sce2198	-	hypothetical protein
2202	 56.81	-2	2966247..2966723	+	158	162450471	-	sce2199	-	hypothetical protein
2203	 66.13	-1	2967004..2967558	+	184	162450472	-	sce2200	-	hypothetical protein
2204	 73.15	0	2967575..2968129	-	184	162450473	cheW5	sce2201	-	chemotaxis protein
2205	 73.12	0	2968126..2969892	-	588	162450474	mcp	sce2202	-	putative methyl-accepting chemotaxis protein
2206	 74.17	0	2969889..2971607	-	572	162450475	cheA4	sce2203	-	putative chemotaxis protein CheA
2207	 72.57	0	2971613..2972137	-	174	162450476	cheD	sce2204	-	putative chemotaxis protein CheD
2208	 74.40	0	2972134..2972883	-	249	162450477	-	sce2205	-	hypothetical protein
2209	 63.20	-1	2972897..2973271	-	124	162450478	-	sce2206	-	two component response regulator
2210	 72.55	0	2973879..2975882	-	667	162450479	-	sce2207	-	Slit homolog 3 protein precursor (Slit-3)
2211	 72.94	0	2975879..2977360	-	493	162450480	-	sce2208	-	hypothetical protein
2212	 68.78	0	2977357..2978445	-	362	162450481	-	sce2209	-	transposon Ty1 protein B
2213	 73.72	0	2978740..2980257	+	505	162450482	-	sce2210	-	putative pyrazinamidase/nicotinamidase
2214	 73.90	0	2980254..2980958	+	234	162450483	gst8	sce2211	-	putative glutathione-S-transferase
2215	 65.30	-1	2981575..2983041	+	488	162450484	-	sce2212	-	putative topoisomerase
2216	 70.45	0	2983133..2983423	-	96	162450485	-	sce2213	-	hypothetical protein
2217	 75.35	+1	2983436..2984437	-	333	162450486	-	sce2214	-	alpha/beta family hydrolase
2218	 71.19	0	2984586..2985557	+	323	162450487	cheR2	sce2215	-	methyl-accepting chemotaxis protein O-methyltransferase
2219	 72.52	0	2985663..2988431	-	922	162450488	-	sce2216	-	hypothetical protein
2220	 77.02	+1	2988816..2991287	+	823	162450489	-	sce2217	-	proteinase
2221	 68.94	0	2991515..2992963	-	482	162450490	-	sce2218	-	hypothetical protein
2222	 67.52	0	2993249..2993482	-	77	162450491	-	sce2219	-	hypothetical protein
2223	 66.37	-1	2994153..2995151	+	332	162450492	-	sce2220	-	LACI-type transcriptional regulator
2224	 69.10	0	2995161..2996681	+	506	162450493	-	sce2221	-	hypothetical protein
2225	 67.07	0	2996770..2997756	+	328	162450494	-	sce2222	-	sugar ABC transport system permease protein
2226	 68.26	0	2997759..2998763	+	334	162450495	-	sce2223	-	putative sugar transport system permease
2227	 65.76	-1	2998788..2999780	+	330	162450496	-	sce2224	-	NDP-sugar oxidoreductase
2228	 74.15	0	2999857..3000978	-	373	162450497	galK	sce2225	-	hypothetical protein
2229	 71.64	0	3001120..3001944	-	274	162450498	aroE2	sce2226	-	shikimate dehydrogenase
2230	 71.76	0	3002121..3003023	-	300	162450499	-	sce2227	-	hypothetical protein
2231	 72.82	0	3003282..3004598	+	438	162450500	-	sce2228	-	putative integral membrane protein
2232	 66.57	-1	3004844..3005884	+	346	162450501	sspA	sce2229	-	glutamyl endopeptidase
2233	 67.78	0	3005884..3006153	+	89	162450502	-	sce2230	-	hypothetical protein
2234	 65.12	-1	3006249..3007409	+	386	162450503	-	sce2231	-	lipase
2235	 75.14	+1	3007508..3007684	-	58	162450504	-	sce2232	-	hypothetical protein
2236	 64.79	-1	3007746..3008012	-	88	162450505	-	sce2233	-	hypothetical protein
2237	 68.69	0	3008406..3010724	+	772	162450506	yhjM	sce2234	-	cellulase
2238	 73.16	0	3010906..3012954	+	682	162450507	-	sce2235	-	protein kinase
2239	 71.47	0	3013025..3015148	+	707	162450508	-	sce2236	-	putative two-component system sensor kinase
2240	 63.48	-1	3015114..3015228	+	37	162450509	-	sce2237	-	hypothetical protein
2241	 67.14	0	3015390..3015812	+	140	162450510	-	sce2238	-	hypothetical protein
2242	 69.42	0	3015866..3016483	-	205	162450511	clpP1	sce2239	-	endopeptidase Clp
2243	 79.45	+2	3016607..3017521	+	304	162450512	-	sce2240	-	AraC family transcriptional regulator
2244	 75.38	+1	3017775..3018107	+	110	162450513	syrM	sce2241	-	transcriptional regulator syrM
2245	 70.07	0	3018294..3019469	+	391	162450514	-	sce2242	-	putative hydrolase
2246	 66.67	-1	3019741..3020442	+	233	162450515	-	sce2243	-	hypothetical protein
2247	 71.93	0	3020672..3021127	-	151	162450516	-	sce2244	-	acetyltransferase yjaB
2248	 64.94	-1	3021284..3021745	-	153	162450517	-	sce2245	-	hypothetical protein
2249	 68.97	0	3021952..3023430	+	492	162450518	yhjG2	sce2246	-	hypothetical protein
2250	 75.72	+1	3023745..3025025	-	426	162450519	-	sce2247	-	sigma-54 dependent transcriptional regulator
2251	 78.04	+1	3025145..3026164	-	339	162450520	-	sce2248	-	hypothetical protein
2252	 71.97	0	3032225..3033262	+	345	162450521	-	sce2249	-	hypothetical protein
2253	 75.81	+1	3033259..3034308	+	349	162450522	-	sce2250	-	hypothetical protein
2254	 70.24	0	3034314..3036245	+	643	162450523	-	sce2251	-	hypothetical protein
2255	 66.95	0	3036371..3036718	+	115	162450524	-	sce2252	-	hypothetical protein
2256	 70.05	0	3036880..3037737	-	285	162450525	yafJ	sce2253	-	putative amidotransferase
2257	 73.57	0	3037730..3039148	-	472	162450526	-	sce2254	-	hypothetical protein
2258	 72.44	0	3039156..3040661	-	501	162450527	-	sce2255	-	hypothetical protein
2259	 76.19	+1	3040962..3041423	-	153	162450528	-	sce2256	-	hypothetical protein
2260	 70.45	0	3041542..3042861	-	439	162450529	pfp	sce2257	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
2261	 68.70	0	3043083..3043919	-	278	162450530	-	sce2258	-	hypothetical protein
2262	 68.41	0	3044476..3045624	+	382	162450531	-	sce2259	-	hypothetical protein
2263	 71.64	0	3045641..3047209	+	522	162450532	-	sce2260	-	putative secreted protein
2264	 69.54	0	3047251..3048399	-	382	162450533	-	sce2261	-	sensor histidine kinase
2265	 68.49	0	3048709..3049917	-	402	162450534	hisC1	sce2262	-	histidinol-phosphate aminotransferase
2266	 77.48	+1	3050372..3051814	-	480	162450535	-	sce2263	-	hypothetical protein
2267	 61.77	-2	3052440..3053093	+	217	162450536	-	sce2264	-	hypothetical protein
2268	 66.48	-1	3053132..3054223	-	363	162450537	-	sce2265	-	hypothetical protein
2269	 72.01	0	3054447..3055400	+	317	162450538	-	sce2266	-	hypothetical protein
2270	 70.31	0	3055407..3055598	-	63	162450539	-	sce2267	-	hypothetical protein
2271	 62.91	-1	3055685..3056989	-	434	162450540	-	sce2268	-	hypothetical protein
2272	 64.79	-1	3056999..3058699	-	566	162450541	-	sce2269	-	hypothetical protein
2273	 63.48	-1	3059798..3060205	-	135	162450542	-	sce2270	-	hypothetical protein
2274	 70.50	0	3061223..3062605	+	460	162450543	-	sce2271	-	hypothetical protein
2275	 73.91	0	3062629..3063111	+	160	162450544	-	sce2272	-	hypothetical protein
2276	 73.67	0	3063545..3064543	-	332	162450546	-	sce2273	-	LysR family transcriptional regulator
2277	 69.08	0	3064504..3064959	+	151	162450545	-	sce2274	-	hypothetical protein
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.