IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2087	 63.95	-1	2825941..2826234	+	97	162450356	-	sce2084	-	hypothetical protein
2088	 68.93	0	2826678..2829065	+	795	162450357	-	sce2085	-	hypothetical protein
2089	 65.52	-1	2829089..2829613	+	174	162450358	-	sce2086	-	hypothetical protein
2090	 72.73	0	2829616..2830341	+	241	162450359	-	sce2087	-	hypothetical protein
2091	 77.18	+1	2830338..2831402	+	354	162450360	-	sce2088	-	hypothetical protein
2092	 71.75	0	2831399..2832697	+	432	162450361	-	sce2089	-	hypothetical protein
2093	 73.92	0	2832694..2834637	+	647	162450362	-	sce2090	-	ATPase
2094	 75.00	0	2834634..2834897	+	87	162450363	-	sce2091	-	hypothetical protein
2095	 68.22	0	2834931..2835575	+	214	162450364	-	sce2092	-	hypothetical protein
2096	 69.97	0	2835598..2835900	+	100	162450365	-	sce2093	-	hypothetical protein
2097	 71.24	0	2835913..2837028	+	371	162450366	-	sce2094	-	hypothetical protein
2098	 69.11	0	2837025..2837597	+	190	162450367	-	sce2095	-	hypothetical protein
2099	 77.47	+1	2837597..2837920	+	107	162450368	-	sce2096	-	hypothetical protein
2100	 69.17	0	2837920..2838279	+	119	162450369	-	sce2097	-	hypothetical protein
2101	 71.50	0	2838276..2840843	+	855	162450370	-	sce2098	-	hypothetical protein
2102	 70.27	0	2840840..2843839	+	999	162450371	-	sce2099	-	hypothetical protein
2103	 70.91	0	2843836..2846001	+	721	162450372	-	sce2100	-	hypothetical protein
2104	 69.58	0	2846020..2850003	+	1327	162450373	-	sce2101	-	Pectine lyase family protein
2105	 69.08	0	2850669..2851454	+	261	162450374	-	sce2102	-	hypothetical protein
2106	 67.00	0	2851454..2852059	+	201	162450375	-	sce2103	-	hypothetical protein
2107	 66.29	-1	2852052..2852585	-	177	162450376	-	sce2104	-	hypothetical protein
2108	 68.19	0	2853524..2854636	+	370	162450377	-	sce2105	-	hypothetical protein
2109	 69.27	0	2854633..2855517	+	294	162450378	-	sce2106	-	hypothetical protein
2110	 70.25	0	2855695..2856168	-	157	162450379	-	sce2107	-	hypothetical protein
2111	 68.01	0	2856625..2856921	-	98	162450380	-	sce2108	-	putative transposase
2112	 65.06	-1	2856997..2857806	+	269	162450381	-	sce2109	-	hypothetical protein
2113	 72.19	0	2858038..2860029	+	663	162450382	-	sce2110	-	hypothetical protein
2114	 74.07	0	2860126..2860908	+	260	162450383	-	sce2111	-	hypothetical protein
2115	 60.51	-2	2861268..2861424	-	51	162450384	-	sce2112	-	hypothetical protein
2116	 65.10	-1	2861539..2861793	-	84	162450385	-	sce2113	-	hypothetical protein
2117	 71.07	0	2862110..2864359	+	749	162450386	katE	sce2114	-	hypothetical protein
2118	 70.85	0	2864367..2866661	-	764	162450387	-	sce2115	-	glycogen debranching protein
2119	 70.83	0	2866742..2866885	-	47	162450388	-	sce2116	-	hypothetical protein
2120	 70.68	0	2867204..2867602	+	132	162450389	-	sce2117	-	type I restriction-modification system endonuclease
2121	 73.54	0	2867686..2871000	-	1104	162450390	-	sce2118	-	putative oxidoreductase
2122	 76.06	+1	2871010..2872116	-	368	162450391	-	sce2119	-	putative racemase
2123	 70.69	0	2872119..2873906	-	595	162450392	-	sce2120	-	pyruvate decarboxylase
2124	 72.80	0	2874074..2875117	-	347	162450393	fabG4	sce2121	-	putative 3-oxoacyl-[acyl-carrier-protein] reductase
2125	 68.35	0	2875190..2877145	-	651	162450394	-	sce2122	-	putative multicopper oxidase
2126	 72.30	0	2877223..2878128	+	301	162450395	-	sce2123	-	LysR family transcriptional regulator
2127	 78.15	+1	2878650..2879912	-	420	162450396	-	sce2124	-	hypothetical protein
2128	 79.13	+1	2879970..2884100	-	1376	162450397	-	sce2125	-	hypothetical protein
2129	 76.80	+1	2884097..2885398	-	433	162450398	-	sce2126	-	hypothetical protein
2130	 75.58	+1	2885395..2886999	-	534	162450399	-	sce2127	-	hypothetical protein
2131	 68.65	0	2887241..2889211	+	656	162450400	-	sce2128	-	putative secreted protein
2132	 75.89	+1	2889980..2890456	+	158	162450401	-	sce2129	-	MerR family transcriptional regulator
2133	 75.48	+1	2890453..2893050	+	865	162450402	-	sce2130	-	hypothetical protein
2134	 76.12	+1	2893096..2894079	-	327	162450403	-	sce2131	-	hypothetical protein
2135	 67.84	0	2894277..2894702	-	141	162450404	-	sce2132	-	hypothetical protein
2136	 67.58	0	2895496..2896587	+	363	162450405	rppA	sce2133	-	naringenin-chalcone synthase
2137	 70.51	0	2896644..2897606	+	320	162450406	-	sce2134	-	oxidoreductase
2138	 72.18	0	2897603..2898037	+	144	162450407	-	sce2135	-	hypothetical protein
2139	 61.83	-2	2898229..2898600	+	123	162450408	-	sce2136	-	putative conserved membrane protein
2140	 70.59	0	2898721..2899179	+	152	162450409	-	sce2137	-	hypothetical protein
2141	 71.09	0	2899487..2904229	+	1580	162450410	-	sce2138	-	putative multicopper oxidase
2142	 77.03	+1	2904249..2906438	+	729	162450411	-	sce2139	-	hypothetical protein
2143	 72.49	0	2906435..2907052	+	205	162450412	-	sce2140	-	putative secreted protein
2144	 76.37	+1	2907060..2907770	+	236	162450413	-	sce2141	-	hypothetical protein
2145	 78.55	+1	2907760..2909526	+	588	162450414	-	sce2142	-	ABC transporter, periplasmic-substrate binding protein, putative
2146	 67.02	0	2909716..2910276	+	186	162450415	-	sce2143	-	hypothetical protein
2147	 66.99	0	2910555..2911169	-	204	162450416	-	sce2144	-	hypothetical protein
2148	 69.84	0	2911295..2911546	-	83	162450417	-	sce2145	-	hypothetical protein
2149	 70.37	0	2912039..2912659	-	206	162450418	-	sce2146	-	putative methyltransferase
2150	 72.33	0	2912747..2914087	-	446	162450419	hflX2	sce2147	-	GTP-binding protein HflX
2151	 73.33	0	2914218..2914487	-	89	162450420	-	sce2148	-	hypothetical protein
2152	 78.85	+1	2914613..2915548	+	311	162450421	-	sce2149	-	hypothetical protein
2153	 74.46	0	2915634..2915864	+	76	162450422	-	sce2150	-	hypothetical protein
2154	 67.40	0	2916030..2916851	+	273	162450423	-	sce2151	-	hypothetical protein
2155	 68.18	0	2917096..2917293	+	65	162450424	gst6	sce2152	-	putative glutathione S-transferase protein
2156	 70.74	0	2917337..2917999	+	220	162450425	-	sce2153	-	TetR family transcriptional regulator
2157	 72.35	0	2918084..2919103	+	339	162450426	-	sce2154	-	NAD-dependent epimerase/dehydratase
2158	 72.24	0	2919195..2919929	+	244	162450427	-	sce2155	-	hypothetical protein
2159	 68.37	0	2919934..2920875	+	313	162450428	-	sce2156	-	hypothetical protein
2160	 68.33	0	2920902..2921141	-	79	162450429	-	sce2157	-	hypothetical protein
2161	 68.46	0	2921482..2921928	-	148	162450430	-	sce2158	-	hypothetical protein
2162	 68.40	0	2922045..2922332	-	95	162450431	-	sce2159	-	hypothetical protein
2163	 75.32	+1	2922532..2922762	-	76	162450432	-	sce2160	-	hypothetical protein
2164	 65.44	-1	2922970..2924520	-	516	162450433	-	sce2161	-	hypothetical protein
2165	 64.50	-1	2925332..2925562	-	76	162450434	-	sce2162	-	hypothetical protein
2166	 76.22	+1	2925597..2926454	-	285	162450435	-	sce2163	-	hypothetical protein
2167	 74.75	0	2926451..2928034	-	527	162450436	-	sce2164	-	dehydrogenase
2168	 67.80	0	2928039..2928920	-	293	162450437	-	sce2165	-	hypothetical protein
2169	 73.88	0	2928925..2929326	-	133	162450438	-	sce2166	-	hypothetical protein
2170	 70.24	0	2929399..2930238	-	279	162450439	-	sce2167	-	ECF family RNA polymerase sigma factor
2171	 69.55	0	2930235..2931137	-	300	162450440	dha	sce2168	-	haloalkane dehalogenase
2172	 70.63	0	2931274..2931702	+	142	162450441	-	sce2169	-	hypothetical protein
2173	 62.17	-2	2931785..2932273	+	162	162450442	-	sce2170	-	hypothetical protein
2174	 67.15	0	2932338..2932751	-	137	162450443	-	sce2171	-	hypothetical protein
2175	 68.69	0	2933176..2934165	-	329	162450444	-	sce2172	-	hypothetical protein
2176	 79.01	+1	2934668..2935372	+	234	162450445	-	sce2173	-	hypothetical protein
2177	 69.72	0	2935639..2936718	-	359	162450446	-	sce2174	-	hypothetical protein
2178	 67.72	0	2936739..2938256	-	505	162450447	-	sce2175	-	PE_PGRS family protein
2179	 72.85	0	2938643..2939644	-	333	162450448	-	sce2176	-	LysR family transcriptional regulator
2180	 74.05	0	2939657..2940739	+	360	162450449	-	sce2177	-	hypothetical protein
2181	 68.30	0	2940964..2942001	-	345	162450450	-	sce2178	-	hypothetical protein
2182	 68.98	0	2942834..2943049	-	71	162450451	-	sce2179	-	hypothetical protein
2183	 67.55	0	2943128..2944033	+	301	162450452	-	sce2180	-	hypothetical protein
2184	 73.09	0	2944347..2944751	+	134	162450453	-	sce2181	-	hypothetical protein
2185	 71.06	0	2944992..2946107	+	371	162450454	chsA	sce2182	-	naringenin-chalcone synthase
2186	 70.66	0	2946112..2946837	+	241	162450455	ubiG2	sce2183	-	3-demethylubiquinone-9 3-O-methyltransferase
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.