IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2020	 69.53	0	2737856..2739463	-	535	162450289	-	sce2017	-	hypothetical protein
2021	 67.33	0	2739480..2740079	-	199	162450290	-	sce2018	-	hypothetical protein
2022	 69.68	0	2740073..2741431	-	452	162450291	-	sce2019	-	hypothetical protein
2023	 70.96	0	2741428..2742033	-	201	162450292	-	sce2020	-	hypothetical protein
2024	 70.97	0	2742030..2742749	-	239	162450293	-	sce2021	-	hypothetical protein
2025	 72.25	0	2742866..2744029	+	387	162450294	-	sce2022	-	hypothetical protein
2026	 70.97	0	2744102..2744821	-	239	162450295	ppiD	sce2023	-	peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
2027	 70.91	0	2744873..2745721	-	282	162450296	-	sce2024	-	hydroxysteroid (17-beta) dehydrogenase 4
2028	 73.55	0	2745851..2746693	-	280	162450297	-	sce2025	-	hypothetical protein
2029	 75.82	+1	2746704..2749040	-	778	162450298	-	sce2026	-	protein kinase
2030	 70.91	0	2749130..2751109	+	659	162450299	-	sce2027	-	hypothetical protein
2031	 69.71	0	2751096..2752835	+	579	162450300	-	sce2028	-	hypothetical protein
2032	 67.59	0	2752878..2753309	-	143	162450302	-	sce2029	-	transcriptional regulator
2033	 71.78	0	2753301..2754905	+	534	162450301	-	sce2030	-	hypothetical protein
2034	 67.94	0	2755105..2755734	+	209	162450303	-	sce2031	-	hypothetical protein
2035	 71.44	0	2755976..2757316	-	446	162450304	pmbA	sce2032	-	PmbA protein
2036	 72.51	0	2758382..2759134	+	250	162450305	-	sce2033	-	hypothetical protein
2037	 74.07	0	2759202..2760620	+	472	162450306	-	sce2034	-	hypothetical protein
2038	 70.47	0	2760694..2761350	-	218	162450307	trxA1	sce2035	-	thioredoxin
2039	 74.02	0	2761498..2762490	-	330	162450308	appC	sce2036	-	oligopeptide ABC transporter, permease component
2040	 76.99	+1	2762487..2764016	-	509	162450309	oppB1	sce2037	-	ABC transport protein inner membrane component
2041	 73.36	0	2764033..2765616	-	527	162450310	-	sce2038	-	putative protease
2042	 72.81	0	2765616..2766689	-	357	162450311	-	sce2039	-	glutamyl endopeptidase
2043	 71.96	0	2766721..2768532	-	603	162450312	pp2c2	sce2040	-	phosphoprotein phosphatase
2044	 71.47	0	2768529..2769548	-	339	162450313	-	sce2041	-	FHA domain-containing protein
2045	 70.86	0	2770564..2771088	-	174	162450314	-	sce2042	-	hypothetical protein
2046	 76.79	+1	2772137..2773252	-	371	162450315	-	sce2043	-	putative secreted protein
2047	 76.99	+1	2773249..2774352	-	367	162450316	ltaA	sce2044	-	hypothetical protein
2048	 76.70	+1	2774412..2775986	-	524	162450317	-	sce2045	-	hypothetical protein
2049	 76.10	+1	2776777..2778345	+	522	162450318	-	sce2046	-	hypothetical protein
2050	 72.19	0	2778621..2779163	+	180	162450319	-	sce2047	-	hypothetical protein
2051	 78.48	+1	2779181..2779417	+	78	162450320	-	sce2048	-	hypothetical protein
2052	 72.78	0	2779476..2780162	+	228	162450321	-	sce2049	-	two-component system response regulator
2053	 75.02	0	2780159..2781631	+	490	162450322	-	sce2050	-	sensor histidine kinase
2054	 70.40	0	2781687..2782061	+	124	162450323	-	sce2051	-	two component response regulator
2055	 73.46	0	2782174..2783322	+	382	162450324	-	sce2052	-	hypothetical protein
2056	 71.52	0	2783713..2784165	+	150	162450325	-	sce2053	-	hypothetical protein
2057	 77.71	+1	2784181..2785194	-	337	162450326	-	sce2054	-	hypothetical protein
2058	 75.60	+1	2785191..2787809	-	872	162450327	-	sce2055	-	hypothetical protein
2059	 73.38	0	2787817..2789247	-	476	162450328	-	sce2056	-	protein kinase
2060	 73.20	0	2789616..2790641	-	341	162450329	-	sce2057	-	putative sphingosine kinase enzyme
2061	 70.04	0	2790642..2791442	-	266	162450330	-	sce2058	-	hypothetical protein
2062	 76.27	+1	2792013..2793293	-	426	162450331	-	sce2059	-	putative alanine/arginine/proline-rich membrane protein
2063	 74.16	0	2793642..2794976	+	444	162450332	-	sce2060	-	hypothetical protein
2064	 77.44	+1	2795186..2795974	+	262	162450333	-	sce2061	-	hypothetical protein
2065	 74.86	0	2795980..2797395	-	471	162450334	-	sce2062	-	hypothetical protein
2066	 75.47	+1	2797392..2798357	-	321	162450335	-	sce2063	-	hypothetical protein
2067	 75.14	+1	2798354..2800360	-	668	162450336	-	sce2064	-	asparagine synthetase
2068	 77.11	+1	2800370..2802649	-	759	162450337	-	sce2065	-	hypothetical protein
2069	 77.94	+1	2802739..2803359	-	206	162450338	-	sce2066	-	putative LysE type translocator
2070	 74.93	0	2803459..2804487	-	342	162450339	-	sce2067	-	putative secreted protein
2071	 70.05	0	2804484..2805725	-	413	162450340	-	sce2068	-	putative secreted protein
2072	 71.06	0	2806681..2808273	+	530	162450341	-	sce2069	-	hypothetical protein
2073	 74.32	0	2808270..2809823	+	517	162450342	-	sce2070	-	putative zinc protease
2074	 67.94	0	2809897..2810523	-	208	162450343	-	sce2071	-	putative secreted protein
2075	 78.65	+1	2810569..2812020	-	483	162450344	-	sce2072	-	putative secreted protein
2076	 75.50	+1	2812378..2815989	-	1203	162450345	-	sce2073	-	hypothetical protein
2077	 72.06	0	2816025..2816339	+	104	162450346	-	sce2074	-	hypothetical protein
2078	 71.18	0	2816352..2817569	+	405	162450347	-	sce2075	-	putative secreted protein
2079	 69.56	0	2817566..2818360	+	264	162450348	-	sce2076	-	putative secreted protein
2080	 74.79	0	2818403..2818993	-	196	162450349	-	sce2077	-	serine protease
2081	 76.96	+1	2819424..2819831	+	135	162450350	-	sce2078	-	lactoylglutathione lyase and related lyases
2082	 76.00	+1	2819968..2820996	+	342	162450351	-	sce2079	-	hypothetical protein
2083	 65.57	-1	2821804..2822259	+	151	162450352	-	sce2080	-	transposase
2084	 73.37	0	2822829..2823335	+	168	162450353	-	sce2081	-	hypothetical protein
2085	 64.29	-1	2823674..2824978	+	434	162450354	-	sce2082	-	hypothetical protein
2086	 70.51	0	2825034..2825501	+	155	162450355	-	sce2083	-	hypothetical protein
2087	 63.95	-1	2825941..2826234	+	97	162450356	-	sce2084	-	hypothetical protein
2088	 68.93	0	2826678..2829065	+	795	162450357	-	sce2085	-	hypothetical protein
2089	 65.52	-1	2829089..2829613	+	174	162450358	-	sce2086	-	hypothetical protein
2090	 72.73	0	2829616..2830341	+	241	162450359	-	sce2087	-	hypothetical protein
2091	 77.18	+1	2830338..2831402	+	354	162450360	-	sce2088	-	hypothetical protein
2092	 71.75	0	2831399..2832697	+	432	162450361	-	sce2089	-	hypothetical protein
2093	 73.92	0	2832694..2834637	+	647	162450362	-	sce2090	-	ATPase
2094	 75.00	0	2834634..2834897	+	87	162450363	-	sce2091	-	hypothetical protein
2095	 68.22	0	2834931..2835575	+	214	162450364	-	sce2092	-	hypothetical protein
2096	 69.97	0	2835598..2835900	+	100	162450365	-	sce2093	-	hypothetical protein
2097	 71.24	0	2835913..2837028	+	371	162450366	-	sce2094	-	hypothetical protein
2098	 69.11	0	2837025..2837597	+	190	162450367	-	sce2095	-	hypothetical protein
2099	 77.47	+1	2837597..2837920	+	107	162450368	-	sce2096	-	hypothetical protein
2100	 69.17	0	2837920..2838279	+	119	162450369	-	sce2097	-	hypothetical protein
2101	 71.50	0	2838276..2840843	+	855	162450370	-	sce2098	-	hypothetical protein
2102	 70.27	0	2840840..2843839	+	999	162450371	-	sce2099	-	hypothetical protein
2103	 70.91	0	2843836..2846001	+	721	162450372	-	sce2100	-	hypothetical protein
2104	 69.58	0	2846020..2850003	+	1327	162450373	-	sce2101	-	Pectine lyase family protein
2105	 69.08	0	2850669..2851454	+	261	162450374	-	sce2102	-	hypothetical protein
2106	 67.00	0	2851454..2852059	+	201	162450375	-	sce2103	-	hypothetical protein
2107	 66.29	-1	2852052..2852585	-	177	162450376	-	sce2104	-	hypothetical protein
2108	 68.19	0	2853524..2854636	+	370	162450377	-	sce2105	-	hypothetical protein
2109	 69.27	0	2854633..2855517	+	294	162450378	-	sce2106	-	hypothetical protein
2110	 70.25	0	2855695..2856168	-	157	162450379	-	sce2107	-	hypothetical protein
2111	 68.01	0	2856625..2856921	-	98	162450380	-	sce2108	-	putative transposase
2112	 65.06	-1	2856997..2857806	+	269	162450381	-	sce2109	-	hypothetical protein
2113	 72.19	0	2858038..2860029	+	663	162450382	-	sce2110	-	hypothetical protein
2114	 74.07	0	2860126..2860908	+	260	162450383	-	sce2111	-	hypothetical protein
2115	 60.51	-2	2861268..2861424	-	51	162450384	-	sce2112	-	hypothetical protein
2116	 65.10	-1	2861539..2861793	-	84	162450385	-	sce2113	-	hypothetical protein
2117	 71.07	0	2862110..2864359	+	749	162450386	katE	sce2114	-	hypothetical protein
2118	 70.85	0	2864367..2866661	-	764	162450387	-	sce2115	-	glycogen debranching protein
2119	 70.83	0	2866742..2866885	-	47	162450388	-	sce2116	-	hypothetical protein
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.