IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1972	 67.68	0	2672677..2673660	+	327	162450241	-	sce1969	-	putative oxidoreductase
1973	 77.78	+1	2674240..2675832	+	530	162450242	celD	sce1970	-	hypothetical protein
1974	 65.90	-1	2675976..2676365	+	129	162450243	-	sce1971	-	putative lipoprotein
1975	 70.73	0	2676724..2677461	+	245	162450244	aqpZ	sce1972	-	Aquaporin Z
1976	 72.12	0	2677574..2679535	+	653	162450245	-	sce1973	-	putative transmembrane protein
1977	 74.06	0	2679596..2680393	-	265	162450246	-	sce1974	-	hypothetical protein
1978	 76.99	+1	2680517..2682580	+	687	162450247	-	sce1975	-	hypothetical protein
1979	 70.40	0	2682843..2683271	-	142	162450248	-	sce1976	-	hypothetical protein
1980	 72.32	0	2683738..2685807	+	689	162450249	-	sce1977	-	hypothetical protein
1981	 70.32	0	2685827..2686894	-	355	162450250	-	sce1978	-	putative peptidase
1982	 73.87	0	2686907..2687614	-	235	162450251	-	sce1979	-	hypothetical protein
1983	 72.07	0	2687625..2689364	-	579	162450252	-	sce1980	-	hypothetical protein
1984	 72.81	0	2689361..2691787	-	808	162450253	-	sce1981	-	hypothetical protein
1985	 65.33	-1	2691813..2692931	-	372	162450254	-	sce1982	-	hypothetical protein
1986	 65.15	-1	2692977..2694230	-	417	162450255	-	sce1983	-	hypothetical protein
1987	 69.70	0	2694393..2695778	-	461	162450256	-	sce1984	-	IS4 family transposase
1988	 70.14	0	2695968..2697089	-	373	162450257	-	sce1985	-	no hits
1989	 68.14	0	2697903..2698649	+	248	162450258	-	sce1986	-	hypothetical protein
1990	 64.94	-1	2698780..2699184	+	134	162450259	-	sce1987	-	hypothetical protein
1991	 76.27	+1	2699222..2699731	-	169	162450260	-	sce1988	-	hypothetical protein
1992	 68.53	0	2700111..2700809	+	232	162450261	rplC	sce1989	-	50S ribosomal protein L3
1993	 71.67	0	2700859..2701497	+	212	162450262	rrmJ	sce1990	-	hypothetical protein
1994	 69.45	0	2701637..2702749	-	370	162450263	-	sce1991	-	glutaryl-CoA dehydrogenase
1995	 74.11	0	2702884..2704953	-	689	162450264	-	sce1992	-	hypothetical protein
1996	 68.99	0	2705180..2707075	-	631	162450265	-	sce1993	-	hypothetical protein
1997	 73.71	0	2707617..2708411	-	264	162450266	-	sce1994	-	hypothetical protein
1998	 72.65	0	2708415..2710118	-	567	162450267	-	sce1995	-	acyl-CoA synthetase
1999	 75.42	+1	2710121..2711605	-	494	162450268	-	sce1996	-	NADH:flavin oxidoreductase / NADH oxidase family protein
2000	 76.32	+1	2711608..2712861	-	417	162450269	-	sce1997	-	putative Acyl-CoA dehydrogenase
2001	 75.40	+1	2712858..2713739	-	293	162450270	-	sce1998	-	enoyl-CoA hydratase
2002	 77.16	+1	2713786..2714328	-	180	162450271	-	sce1999	-	MarR family transcriptional regulator
2003	 75.12	0	2714361..2714786	-	141	162450272	-	sce2000	-	translation initiation inhibitor
2004	 73.75	0	2714783..2715544	-	253	162450273	-	sce2001	-	putative 3-oxoacyl-[acyl-carrier-protein] reductase
2005	 79.54	+2	2715923..2716870	+	315	162450274	-	sce2002	-	hypothetical protein
2006	 69.61	0	2716945..2717589	-	214	162450275	-	sce2003	-	hypothetical protein
2007	 67.38	0	2717741..2719138	-	465	162450276	-	sce2004	-	soluble pyridine nucleotide transhydrogenase
2008	 72.73	0	2719189..2719716	-	175	162450277	-	sce2005	-	hypothetical protein
2009	 78.05	+1	2719779..2721887	+	702	162450278	-	sce2006	-	hypothetical protein
2010	 75.82	+1	2721884..2722768	+	294	162450279	-	sce2007	-	hypothetical protein
2011	 74.78	0	2722806..2723372	+	188	162450280	-	sce2008	-	hypothetical protein
2012	 73.10	0	2723522..2723941	+	139	162450281	-	sce2009	-	hypothetical protein
2013	 61.62	-2	2723972..2724367	-	131	162450282	-	sce2010	-	hypothetical protein
2014	 65.88	-1	2724384..2731157	-	2257	162450283	-	sce2011	-	hypothetical protein
2015	 71.21	0	2732133..2733497	-	454	162450284	gcvP1	sce2012	-	glycine dehydrogenase (decarboxylating)
2016	 65.17	-1	2733554..2733955	-	133	162450285	-	sce2013	-	glycine cleavage system protein H homologue
2017	 70.94	0	2734044..2735165	-	373	162450286	gcvT1	sce2014	-	aminomethyltransferase
2018	 75.87	+1	2735261..2735803	-	180	162450287	-	sce2015	-	putative secreted protein
2019	 71.29	0	2735800..2737899	-	699	162450288	-	sce2016	-	putative pilin biogenesis protein
2020	 69.53	0	2737856..2739463	-	535	162450289	-	sce2017	-	hypothetical protein
2021	 67.33	0	2739480..2740079	-	199	162450290	-	sce2018	-	hypothetical protein
2022	 69.68	0	2740073..2741431	-	452	162450291	-	sce2019	-	hypothetical protein
2023	 70.96	0	2741428..2742033	-	201	162450292	-	sce2020	-	hypothetical protein
2024	 70.97	0	2742030..2742749	-	239	162450293	-	sce2021	-	hypothetical protein
2025	 72.25	0	2742866..2744029	+	387	162450294	-	sce2022	-	hypothetical protein
2026	 70.97	0	2744102..2744821	-	239	162450295	ppiD	sce2023	-	peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
2027	 70.91	0	2744873..2745721	-	282	162450296	-	sce2024	-	hydroxysteroid (17-beta) dehydrogenase 4
2028	 73.55	0	2745851..2746693	-	280	162450297	-	sce2025	-	hypothetical protein
2029	 75.82	+1	2746704..2749040	-	778	162450298	-	sce2026	-	protein kinase
2030	 70.91	0	2749130..2751109	+	659	162450299	-	sce2027	-	hypothetical protein
2031	 69.71	0	2751096..2752835	+	579	162450300	-	sce2028	-	hypothetical protein
2032	 67.59	0	2752878..2753309	-	143	162450302	-	sce2029	-	transcriptional regulator
2033	 71.78	0	2753301..2754905	+	534	162450301	-	sce2030	-	hypothetical protein
2034	 67.94	0	2755105..2755734	+	209	162450303	-	sce2031	-	hypothetical protein
2035	 71.44	0	2755976..2757316	-	446	162450304	pmbA	sce2032	-	PmbA protein
2036	 72.51	0	2758382..2759134	+	250	162450305	-	sce2033	-	hypothetical protein
2037	 74.07	0	2759202..2760620	+	472	162450306	-	sce2034	-	hypothetical protein
2038	 70.47	0	2760694..2761350	-	218	162450307	trxA1	sce2035	-	thioredoxin
2039	 74.02	0	2761498..2762490	-	330	162450308	appC	sce2036	-	oligopeptide ABC transporter, permease component
2040	 76.99	+1	2762487..2764016	-	509	162450309	oppB1	sce2037	-	ABC transport protein inner membrane component
2041	 73.36	0	2764033..2765616	-	527	162450310	-	sce2038	-	putative protease
2042	 72.81	0	2765616..2766689	-	357	162450311	-	sce2039	-	glutamyl endopeptidase
2043	 71.96	0	2766721..2768532	-	603	162450312	pp2c2	sce2040	-	phosphoprotein phosphatase
2044	 71.47	0	2768529..2769548	-	339	162450313	-	sce2041	-	FHA domain-containing protein
2045	 70.86	0	2770564..2771088	-	174	162450314	-	sce2042	-	hypothetical protein
2046	 76.79	+1	2772137..2773252	-	371	162450315	-	sce2043	-	putative secreted protein
2047	 76.99	+1	2773249..2774352	-	367	162450316	ltaA	sce2044	-	hypothetical protein
2048	 76.70	+1	2774412..2775986	-	524	162450317	-	sce2045	-	hypothetical protein
2049	 76.10	+1	2776777..2778345	+	522	162450318	-	sce2046	-	hypothetical protein
2050	 72.19	0	2778621..2779163	+	180	162450319	-	sce2047	-	hypothetical protein
2051	 78.48	+1	2779181..2779417	+	78	162450320	-	sce2048	-	hypothetical protein
2052	 72.78	0	2779476..2780162	+	228	162450321	-	sce2049	-	two-component system response regulator
2053	 75.02	0	2780159..2781631	+	490	162450322	-	sce2050	-	sensor histidine kinase
2054	 70.40	0	2781687..2782061	+	124	162450323	-	sce2051	-	two component response regulator
2055	 73.46	0	2782174..2783322	+	382	162450324	-	sce2052	-	hypothetical protein
2056	 71.52	0	2783713..2784165	+	150	162450325	-	sce2053	-	hypothetical protein
2057	 77.71	+1	2784181..2785194	-	337	162450326	-	sce2054	-	hypothetical protein
2058	 75.60	+1	2785191..2787809	-	872	162450327	-	sce2055	-	hypothetical protein
2059	 73.38	0	2787817..2789247	-	476	162450328	-	sce2056	-	protein kinase
2060	 73.20	0	2789616..2790641	-	341	162450329	-	sce2057	-	putative sphingosine kinase enzyme
2061	 70.04	0	2790642..2791442	-	266	162450330	-	sce2058	-	hypothetical protein
2062	 76.27	+1	2792013..2793293	-	426	162450331	-	sce2059	-	putative alanine/arginine/proline-rich membrane protein
2063	 74.16	0	2793642..2794976	+	444	162450332	-	sce2060	-	hypothetical protein
2064	 77.44	+1	2795186..2795974	+	262	162450333	-	sce2061	-	hypothetical protein
2065	 74.86	0	2795980..2797395	-	471	162450334	-	sce2062	-	hypothetical protein
2066	 75.47	+1	2797392..2798357	-	321	162450335	-	sce2063	-	hypothetical protein
2067	 75.14	+1	2798354..2800360	-	668	162450336	-	sce2064	-	asparagine synthetase
2068	 77.11	+1	2800370..2802649	-	759	162450337	-	sce2065	-	hypothetical protein
2069	 77.94	+1	2802739..2803359	-	206	162450338	-	sce2066	-	putative LysE type translocator
2070	 74.93	0	2803459..2804487	-	342	162450339	-	sce2067	-	putative secreted protein
2071	 70.05	0	2804484..2805725	-	413	162450340	-	sce2068	-	putative secreted protein
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.