IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1548	 61.39	-2	2108741..2109157	-	138	162449817	-	sce1546	-	hypothetical protein
1549	 73.30	0	2109506..2111134	-	542	162449818	-	sce1547	-	N-acyl-D-amino-acid deacylase
1550	 73.26	0	2111537..2112613	+	358	162449819	-	sce1548	-	glycosyltransferase
1551	 69.48	0	2112716..2113354	+	212	162449820	-	sce1549	-	putative sugar aldolase
1552	 69.80	0	2113351..2113893	+	180	162449821	-	sce1550	-	dioxygenase
1553	 73.96	0	2113896..2114594	+	232	162449822	masA	sce1551	-	enolase-phosphatase
1554	 74.89	0	2114658..2118560	+	1300	162449823	-	sce1552	-	protein kinase
1555	 64.62	-1	2118847..2119431	+	194	162449824	-	sce1553	-	O-methyltransferase family protein
1556	 76.64	+1	2119625..2121298	-	557	162449825	-	sce1554	-	prolipoprotein diacylglyceryl transferase
1557	 75.32	+1	2121295..2122692	-	465	162449826	-	sce1555	-	hypothetical protein
1558	 66.53	-1	2123303..2124754	+	483	162449827	-	sce1556	-	hypothetical protein
1559	 71.78	0	2124875..2125735	-	286	162449828	-	sce1557	-	hypothetical protein
1560	 73.27	0	2125909..2126847	+	312	162449829	-	sce1558	-	LysR family transcriptional regulator
1561	 67.49	0	2126959..2128896	+	645	162449830	-	sce1559	-	putative secreted protein
1562	 63.38	-1	2129468..2130562	+	364	162449831	-	sce1560	-	hypothetical protein
1563	 72.87	0	2130864..2131604	+	246	162449832	-	sce1561	-	hypothetical protein
1564	 72.40	0	2131877..2133970	+	697	162449833	-	sce1562	-	glycosyl hydrolase
1565	 68.39	0	2134017..2135354	+	445	162449834	-	sce1563	-	Alpha-1-antitrypsin-like protein CM55-MS precursor.
1566	 64.07	-1	2135521..2135751	+	76	162449835	-	sce1564	-	hypothetical protein
1567	 72.30	0	2135790..2136695	-	301	162449836	-	sce1565	-	hypothetical protein
1568	 70.69	0	2136781..2138496	-	571	162449837	-	sce1566	-	hypothetical protein
1569	 64.46	-1	2138640..2139227	-	195	162449838	-	sce1567	-	hypothetical protein
1570	 68.61	0	2139269..2140711	-	480	162449839	-	sce1568	-	hypothetical protein
1571	 72.30	0	2140905..2142341	-	478	162449840	pdhC	sce1569	-	dihydrolipoyllysine-residue acetyltransferase
1572	 68.21	0	2142345..2143319	-	324	162449841	pdhB1	sce1570	-	pyruvate dehydrogenase (acetyl-transferring)
1573	 70.78	0	2143473..2144663	-	396	162449842	pdhA	sce1571	-	pyruvate dehydrogenase (acetyl-transferring)
1574	 72.46	0	2144867..2145436	-	189	162449843	-	sce1572	-	hypothetical protein
1575	 74.53	0	2145515..2146633	-	372	162449844	lipA	sce1573	-	lipoyl synthase
1576	 76.96	+1	2146683..2147828	-	381	162449845	-	sce1574	-	translation initiation factor IF-2B alpha subunit
1577	 75.38	+1	2147829..2148161	-	110	162449846	-	sce1575	-	hypothetical protein
1578	 69.52	0	2148172..2149011	-	279	162449847	fabG2	sce1576	-	3-oxoacyl-[acyl-carrier-protein] reductase
1579	 71.31	0	2149849..2150946	+	365	162449848	-	sce1577	-	putative beta-galactosidase
1580	 68.95	0	2151119..2151949	+	276	162449849	-	sce1578	-	hypothetical protein
1581	 78.12	+1	2152001..2152987	-	328	162449850	-	sce1579	-	hypothetical protein
1582	 76.78	+1	2153825..2155021	+	398	162449851	-	sce1580	-	hypothetical protein
1583	 71.36	0	2154999..2155787	-	262	162449852	-	sce1581	-	hypothetical protein
1584	 72.97	0	2156452..2159943	+	1163	162449853	nos	sce1582	-	nitric-oxide synthase, oxygenase subunit
1585	 71.00	0	2160910..2161671	+	253	162449854	-	sce1583	-	hypothetical protein
1586	 74.92	0	2162031..2162357	+	108	162449855	-	sce1584	-	hypothetical protein
1587	 71.35	0	2162323..2163240	-	305	162449856	-	sce1585	-	hypothetical protein
1588	 68.44	0	2163468..2164598	+	376	162449857	-	sce1586	-	hypothetical protein
1589	 78.06	+1	2164683..2168420	+	1245	162449858	-	sce1587	-	protein kinase
1590	 67.51	0	2168625..2169809	+	394	162449859	-	sce1588	-	cytochrome P450 CYP260A1
1591	 64.63	-1	2170142..2170582	-	146	162449860	-	sce1589	-	hypothetical protein
1592	 75.99	+1	2171302..2173833	-	843	162449861	-	sce1590	-	hypothetical protein
1593	 73.80	0	2174201..2175055	+	284	162449862	-	sce1591	-	hypothetical protein
1594	 66.12	-1	2175192..2176298	-	368	162449863	-	sce1592	-	hypothetical protein
1595	 73.67	0	2176610..2177137	+	175	162449864	-	sce1593	-	CheY-like response regulator
1596	 71.08	0	2177137..2179401	+	754	162449865	cheA3	sce1594	-	chemotaxis sensor histidine kinase CheA
1597	 73.37	0	2179394..2179930	+	178	162449866	cheW3	sce1595	-	purine-binding chemotaxis protein CheW
1598	 70.53	0	2179987..2180478	+	163	162449867	cheW4	sce1596	-	hypothetical protein
1599	 78.75	+1	2180475..2182592	+	705	162449868	-	sce1597	-	hypothetical protein
1600	 70.23	0	2182589..2183515	+	308	162449869	cheR1	sce1598	-	chemotaxis protein methyltransferase CheR
1601	 71.10	0	2183609..2184691	+	360	162449870	cheB	sce1599	-	putative chemotaxis response regulator CheB type
1602	 74.26	0	2184763..2187450	+	895	162449871	mltD1	sce1600	-	murein transglycosylase
1603	 68.03	0	2187502..2187867	-	121	162449872	-	sce1601	-	hypothetical protein
1604	 75.82	+1	2188229..2190742	+	837	162449873	-	sce1602	-	protein kinase
1605	 72.87	0	2190997..2192673	+	558	162449874	-	sce1603	-	protein kinase
1606	 75.70	+1	2192679..2194703	+	674	162449875	-	sce1604	-	protein kinase
1607	 70.66	0	2195745..2197448	-	567	162449876	-	sce1605	-	PE_PGRS family protein
1608	 72.14	0	2197482..2198522	-	346	162449877	-	sce1606	-	hypothetical protein
1609	 72.63	0	2198701..2200428	-	575	162449878	-	sce1607	-	PE_PGRS family protein
1610	 71.99	0	2200440..2201510	-	356	162449879	-	sce1608	-	hypothetical protein
1611	 74.02	0	2201781..2203385	-	534	162449880	-	sce1609	-	protein kinase
1612	 70.95	0	2203728..2205383	-	551	162449881	-	sce1610	-	PE_PGRS family protein
1613	 71.01	0	2205416..2206450	-	344	162449882	-	sce1611	-	hypothetical protein
1614	 74.12	0	2206495..2208264	-	589	162449883	-	sce1612	-	hypothetical protein
1615	 63.43	-1	2208254..2209273	-	339	162449884	-	sce1613	-	hypothetical protein
1616	 76.84	+1	2209529..2210599	-	356	162449885	gcp	sce1614	-	putative glycoprotease
1617	 76.49	+1	2210587..2211105	-	172	162449886	-	sce1615	-	hypothetical protein
1618	 76.69	+1	2211174..2215604	-	1476	162449887	-	sce1616	-	TPR domain-containing protein
1619	 76.09	+1	2216105..2220103	+	1332	162449888	-	sce1617	-	protein kinase
1620	 66.92	0	2220296..2221096	+	266	162449889	-	sce1618	-	hypothetical protein
1621	 71.48	0	2221266..2222492	+	408	162449890	-	sce1619	-	hypothetical protein
1622	 77.96	+1	2222489..2226022	+	1177	162449891	-	sce1620	-	hypothetical protein
1623	 66.54	-1	2226189..2227007	+	272	162449892	pssA1	sce1621	-	hypothetical protein
1624	 67.41	0	2227150..2227551	+	133	162449893	-	sce1622	-	hypothetical protein
1625	 71.60	0	2227738..2228649	+	303	162449894	-	sce1623	-	hypothetical protein
1626	 74.53	0	2228655..2230244	+	529	162449895	hemA	sce1624	-	hypothetical protein
1627	 73.31	0	2230244..2231146	+	300	162449896	hemC	sce1625	-	hydroxymethylbilane synthase
1628	 76.17	+1	2231261..2232859	+	532	162449897	-	sce1626	-	hypothetical protein
1629	 73.50	0	2233294..2234595	+	433	162449898	-	sce1627	-	RND family efflux transporter
1630	 68.22	0	2234639..2237866	+	1075	162449899	-	sce1628	-	RND family efflux transporter
1631	 73.51	0	2237940..2239079	-	379	162449900	-	sce1629	-	serine protease
1632	 71.91	0	2239189..2240922	+	577	162449901	-	sce1630	-	hypothetical protein
1633	 75.19	+1	2241011..2241538	+	175	162449902	-	sce1631	-	hypothetical protein
1634	 67.30	0	2241799..2242272	+	157	162449903	-	sce1632	-	hypothetical protein
1635	 68.47	0	2242616..2243668	+	350	162449904	prfB1	sce1633	-	peptide chain release factor 2
1636	 71.14	0	2243665..2245386	+	573	162449905	lysS	sce1634	-	lysine--tRNA ligase
1637	 69.63	0	2245383..2247545	+	720	162449906	-	sce1635	-	integral membrane protein
1638	 70.07	0	2247553..2248287	+	244	162449907	-	sce1636	-	ABC transporter, ATP-binding protein
1639	 73.34	0	2248276..2250357	-	693	162449908	-	sce1637	-	GMC oxidoreductase
1640	 66.00	-1	2250550..2251593	-	347	162449909	astA	sce1638	-	arginine N-succinyltransferase
1641	 70.40	0	2251781..2252557	-	258	162449910	aroE1	sce1639	-	hypothetical protein
1642	 72.60	0	2252752..2253408	+	218	162449911	lepB1	sce1640	-	hypothetical protein
1643	 72.81	0	2253418..2255241	-	607	162449912	-	sce1641	-	putative membrane bound zinc metallopeptidase
1644	 72.65	0	2255468..2255968	+	166	162449913	-	sce1642	-	hypothetical protein
1645	 73.25	0	2256034..2256276	+	80	162449914	-	sce1643	-	hypothetical protein
1646	 74.89	0	2256279..2256947	+	222	162449915	-	sce1644	-	RNA polymerase sigma factor
1647	 69.17	0	2256984..2257703	-	239	162449917	-	sce1645	-	hypothetical protein
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.