IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1515	 67.13	0	2074434..2075081	-	215	162449784	-	sce1513	-	hypothetical protein
1516	 68.04	0	2075224..2075805	-	193	162449785	-	sce1514	-	hypothetical protein
1517	 70.39	0	2076175..2077680	+	501	162449786	-	sce1515	-	putative endopeptidase
1518	 64.63	-1	2077725..2079200	-	491	162449787	-	sce1516	-	hypothetical protein
1519	 76.21	+1	2079249..2080202	-	317	162449788	-	sce1517	-	hypothetical protein
1520	 70.65	0	2080199..2080876	-	225	162449789	-	sce1518	-	ECF family RNA polymerase sigma factor
1521	 71.65	0	2080873..2081976	-	367	162449790	-	sce1519	-	hypothetical protein
1522	 75.51	+1	2082313..2083149	+	278	162449791	-	sce1520	-	put. DNA binding protein
1523	 69.02	0	2083330..2083923	+	197	162449792	-	sce1521	-	hypothetical protein
1524	 64.62	-1	2084037..2084378	+	113	162449793	-	sce1522	-	hypothetical protein
1525	 68.37	0	2084402..2086456	+	684	162449794	-	sce1523	-	glycogen debranching protein
1526	 70.03	0	2086521..2087531	-	336	162449795	-	sce1524	-	oxidoreductase
1527	 67.81	0	2087509..2088210	-	233	162449796	-	sce1525	-	hypothetical protein
1528	 70.30	0	2088278..2089267	-	329	162449797	-	sce1526	-	putative D-isomer specific 2-hydroxyacid dehydrogenase family protein
1529	 68.98	0	2089300..2091075	-	591	162449798	ilvD1	sce1527	-	dihydroxy-acid dehydratase
1530	 70.36	0	2091123..2092259	-	378	162449799	gcd	sce1528	-	glucose 1-dehydrogenase
1531	 67.35	0	2092515..2092952	-	145	162449800	-	sce1529	-	hypothetical protein
1532	 68.53	0	2092970..2093344	-	124	162449801	gst5	sce1530	-	hypothetical protein
1533	 67.50	0	2093472..2094677	+	401	162449802	-	sce1531	-	hypothetical protein
1534	 70.65	0	2094697..2095323	+	208	162449803	-	sce1532	-	hypothetical protein
1535	 68.73	0	2095341..2096117	+	258	162449804	-	sce1533	-	put. membrane protein
1536	 64.24	-1	2096176..2096340	+	54	162449805	-	sce1534	-	ArsR family transcriptional regulator
1537	 69.60	0	2096357..2097343	-	328	162449806	-	sce1535	-	alcohol dehydrogenase
1538	 71.00	0	2097548..2098540	-	330	162449807	-	sce1536	-	AraC family transcriptional regulator
1539	 72.32	0	2098776..2099765	-	329	162449808	-	sce1537	-	hypothetical protein
1540	 73.25	0	2099772..2101139	-	455	162449809	-	sce1538	-	hypothetical protein
1541	 68.90	0	2101314..2101760	+	148	162449810	-	sce1539	-	hypothetical protein
1542	 64.44	-1	2102001..2102450	+	149	162449811	-	sce1540	-	hypothetical protein
1543	 69.58	0	2102683..2103402	+	239	162449812	-	sce1541	-	hypothetical protein
1544	 71.93	0	2104173..2105558	+	461	162449813	-	sce1542	-	putative protease inhibitor
1545	 73.87	0	2105958..2106068	-	36	162449815	-	sce1543	-	hypothetical protein
1546	 72.43	0	2106046..2106774	+	242	162449814	-	sce1544	-	hypothetical protein
1547	 77.37	+1	2106777..2108177	+	466	162449816	-	sce1545	-	hypothetical protein
1548	 61.39	-2	2108741..2109157	-	138	162449817	-	sce1546	-	hypothetical protein
1549	 73.30	0	2109506..2111134	-	542	162449818	-	sce1547	-	N-acyl-D-amino-acid deacylase
1550	 73.26	0	2111537..2112613	+	358	162449819	-	sce1548	-	glycosyltransferase
1551	 69.48	0	2112716..2113354	+	212	162449820	-	sce1549	-	putative sugar aldolase
1552	 69.80	0	2113351..2113893	+	180	162449821	-	sce1550	-	dioxygenase
1553	 73.96	0	2113896..2114594	+	232	162449822	masA	sce1551	-	enolase-phosphatase
1554	 74.89	0	2114658..2118560	+	1300	162449823	-	sce1552	-	protein kinase
1555	 64.62	-1	2118847..2119431	+	194	162449824	-	sce1553	-	O-methyltransferase family protein
1556	 76.64	+1	2119625..2121298	-	557	162449825	-	sce1554	-	prolipoprotein diacylglyceryl transferase
1557	 75.32	+1	2121295..2122692	-	465	162449826	-	sce1555	-	hypothetical protein
1558	 66.53	-1	2123303..2124754	+	483	162449827	-	sce1556	-	hypothetical protein
1559	 71.78	0	2124875..2125735	-	286	162449828	-	sce1557	-	hypothetical protein
1560	 73.27	0	2125909..2126847	+	312	162449829	-	sce1558	-	LysR family transcriptional regulator
1561	 67.49	0	2126959..2128896	+	645	162449830	-	sce1559	-	putative secreted protein
1562	 63.38	-1	2129468..2130562	+	364	162449831	-	sce1560	-	hypothetical protein
1563	 72.87	0	2130864..2131604	+	246	162449832	-	sce1561	-	hypothetical protein
1564	 72.40	0	2131877..2133970	+	697	162449833	-	sce1562	-	glycosyl hydrolase
1565	 68.39	0	2134017..2135354	+	445	162449834	-	sce1563	-	Alpha-1-antitrypsin-like protein CM55-MS precursor.
1566	 64.07	-1	2135521..2135751	+	76	162449835	-	sce1564	-	hypothetical protein
1567	 72.30	0	2135790..2136695	-	301	162449836	-	sce1565	-	hypothetical protein
1568	 70.69	0	2136781..2138496	-	571	162449837	-	sce1566	-	hypothetical protein
1569	 64.46	-1	2138640..2139227	-	195	162449838	-	sce1567	-	hypothetical protein
1570	 68.61	0	2139269..2140711	-	480	162449839	-	sce1568	-	hypothetical protein
1571	 72.30	0	2140905..2142341	-	478	162449840	pdhC	sce1569	-	dihydrolipoyllysine-residue acetyltransferase
1572	 68.21	0	2142345..2143319	-	324	162449841	pdhB1	sce1570	-	pyruvate dehydrogenase (acetyl-transferring)
1573	 70.78	0	2143473..2144663	-	396	162449842	pdhA	sce1571	-	pyruvate dehydrogenase (acetyl-transferring)
1574	 72.46	0	2144867..2145436	-	189	162449843	-	sce1572	-	hypothetical protein
1575	 74.53	0	2145515..2146633	-	372	162449844	lipA	sce1573	-	lipoyl synthase
1576	 76.96	+1	2146683..2147828	-	381	162449845	-	sce1574	-	translation initiation factor IF-2B alpha subunit
1577	 75.38	+1	2147829..2148161	-	110	162449846	-	sce1575	-	hypothetical protein
1578	 69.52	0	2148172..2149011	-	279	162449847	fabG2	sce1576	-	3-oxoacyl-[acyl-carrier-protein] reductase
1579	 71.31	0	2149849..2150946	+	365	162449848	-	sce1577	-	putative beta-galactosidase
1580	 68.95	0	2151119..2151949	+	276	162449849	-	sce1578	-	hypothetical protein
1581	 78.12	+1	2152001..2152987	-	328	162449850	-	sce1579	-	hypothetical protein
1582	 76.78	+1	2153825..2155021	+	398	162449851	-	sce1580	-	hypothetical protein
1583	 71.36	0	2154999..2155787	-	262	162449852	-	sce1581	-	hypothetical protein
1584	 72.97	0	2156452..2159943	+	1163	162449853	nos	sce1582	-	nitric-oxide synthase, oxygenase subunit
1585	 71.00	0	2160910..2161671	+	253	162449854	-	sce1583	-	hypothetical protein
1586	 74.92	0	2162031..2162357	+	108	162449855	-	sce1584	-	hypothetical protein
1587	 71.35	0	2162323..2163240	-	305	162449856	-	sce1585	-	hypothetical protein
1588	 68.44	0	2163468..2164598	+	376	162449857	-	sce1586	-	hypothetical protein
1589	 78.06	+1	2164683..2168420	+	1245	162449858	-	sce1587	-	protein kinase
1590	 67.51	0	2168625..2169809	+	394	162449859	-	sce1588	-	cytochrome P450 CYP260A1
1591	 64.63	-1	2170142..2170582	-	146	162449860	-	sce1589	-	hypothetical protein
1592	 75.99	+1	2171302..2173833	-	843	162449861	-	sce1590	-	hypothetical protein
1593	 73.80	0	2174201..2175055	+	284	162449862	-	sce1591	-	hypothetical protein
1594	 66.12	-1	2175192..2176298	-	368	162449863	-	sce1592	-	hypothetical protein
1595	 73.67	0	2176610..2177137	+	175	162449864	-	sce1593	-	CheY-like response regulator
1596	 71.08	0	2177137..2179401	+	754	162449865	cheA3	sce1594	-	chemotaxis sensor histidine kinase CheA
1597	 73.37	0	2179394..2179930	+	178	162449866	cheW3	sce1595	-	purine-binding chemotaxis protein CheW
1598	 70.53	0	2179987..2180478	+	163	162449867	cheW4	sce1596	-	hypothetical protein
1599	 78.75	+1	2180475..2182592	+	705	162449868	-	sce1597	-	hypothetical protein
1600	 70.23	0	2182589..2183515	+	308	162449869	cheR1	sce1598	-	chemotaxis protein methyltransferase CheR
1601	 71.10	0	2183609..2184691	+	360	162449870	cheB	sce1599	-	putative chemotaxis response regulator CheB type
1602	 74.26	0	2184763..2187450	+	895	162449871	mltD1	sce1600	-	murein transglycosylase
1603	 68.03	0	2187502..2187867	-	121	162449872	-	sce1601	-	hypothetical protein
1604	 75.82	+1	2188229..2190742	+	837	162449873	-	sce1602	-	protein kinase
1605	 72.87	0	2190997..2192673	+	558	162449874	-	sce1603	-	protein kinase
1606	 75.70	+1	2192679..2194703	+	674	162449875	-	sce1604	-	protein kinase
1607	 70.66	0	2195745..2197448	-	567	162449876	-	sce1605	-	PE_PGRS family protein
1608	 72.14	0	2197482..2198522	-	346	162449877	-	sce1606	-	hypothetical protein
1609	 72.63	0	2198701..2200428	-	575	162449878	-	sce1607	-	PE_PGRS family protein
1610	 71.99	0	2200440..2201510	-	356	162449879	-	sce1608	-	hypothetical protein
1611	 74.02	0	2201781..2203385	-	534	162449880	-	sce1609	-	protein kinase
1612	 70.95	0	2203728..2205383	-	551	162449881	-	sce1610	-	PE_PGRS family protein
1613	 71.01	0	2205416..2206450	-	344	162449882	-	sce1611	-	hypothetical protein
1614	 74.12	0	2206495..2208264	-	589	162449883	-	sce1612	-	hypothetical protein
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.