IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1447	 73.88	0	1991393..1992625	+	410	162449716	-	sce1445	-	hypothetical protein
1448	 68.56	0	1992629..1993156	-	175	162449717	-	sce1446	-	hypothetical protein
1449	 68.54	0	1993677..1994423	+	248	162449718	-	sce1447	-	putative secreted protein
1450	 65.04	-1	1994434..1995234	+	266	162449719	-	sce1448	-	putative secreted protein
1451	 72.06	0	1995209..1995709	+	166	162449720	-	sce1449	-	putative secreted protein
1452	 71.56	0	1995729..1996832	-	367	162449721	-	sce1450	-	hypothetical protein
1453	 72.78	0	1996960..1997613	-	217	162449722	-	sce1451	-	hypothetical protein
1454	 65.03	-1	1997610..1997975	-	121	162449723	-	sce1452	-	hypothetical protein
1455	 73.55	0	1998132..1999307	-	391	162449724	-	sce1453	-	concanavalin A-like lectin/glucanase-domain-containing protein
1456	 72.45	0	1999433..2000314	-	293	162449725	-	sce1454	-	putative galactose mutarotase
1457	 78.41	+1	2000331..2000645	-	104	162449726	-	sce1455	-	hypothetical protein
1458	 68.43	0	2001141..2001821	+	226	162449727	-	sce1456	-	hypothetical protein
1459	 68.98	0	2001873..2002391	-	172	162449728	-	sce1457	-	hypothetical protein
1460	 75.19	+1	2002517..2003443	+	308	162449729	-	sce1458	-	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase
1461	 74.53	0	2003567..2005588	-	673	162449730	-	sce1459	-	MutS-like mismatch repair protein, ATPases
1462	 69.17	0	2005636..2006634	+	332	162449731	tal1	sce1460	-	transaldolase B
1463	 65.89	-1	2007062..2007703	+	213	162449732	-	sce1461	-	3-demethylubiquinone-9 3-methyltransferase
1464	 69.33	0	2007700..2008563	+	287	162449733	-	sce1462	-	hypothetical protein
1465	 69.20	0	2008556..2009620	+	354	162449734	-	sce1463	-	hypothetical protein
1466	 70.35	0	2009774..2010778	+	334	162449735	-	sce1464	-	hypothetical protein
1467	 67.71	0	2011080..2011367	+	95	162449736	acpP1	sce1465	-	hypothetical protein
1468	 71.22	0	2011364..2012308	+	314	162449737	-	sce1466	-	hypothetical protein
1469	 73.54	0	2012305..2013978	+	557	162449738	-	sce1467	-	putative Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
1470	 66.50	-1	2014536..2015765	-	409	162449739	celA	sce1468	-	hypothetical protein
1471	 70.26	0	2016260..2017735	-	491	162449740	-	sce1469	-	hypothetical protein
1472	 69.42	0	2017916..2019511	+	531	162449741	-	sce1470	-	MATE efflux family protein
1473	 71.23	0	2019600..2020256	-	218	162449742	-	sce1471	-	hypothetical protein
1474	 73.06	0	2020370..2021824	-	484	162449743	-	sce1472	-	hypothetical protein
1475	 77.11	+1	2021844..2022245	-	133	162449744	-	sce1473	-	hypothetical protein
1476	 70.97	0	2022341..2023594	-	417	162449745	-	sce1474	-	two-component sensor histidine kinase
1477	 69.58	0	2024096..2024473	-	125	162449746	-	sce1475	-	hypothetical protein
1478	 69.12	0	2024449..2025018	-	189	162449747	-	sce1476	-	hypothetical protein
1479	 67.40	0	2025381..2025791	-	136	162449748	-	sce1477	-	hypothetical protein
1480	 74.61	0	2025808..2026386	-	192	162449749	-	sce1478	-	hypothetical protein
1481	 71.39	0	2026358..2027161	-	267	162449750	parA1	sce1479	-	chromosome partitioning protein
1482	 70.87	0	2027158..2028108	-	316	162449751	-	sce1480	-	hypothetical protein
1483	 74.06	0	2028033..2028776	-	247	162449752	-	sce1481	-	TRP-like protein
1484	 64.95	-1	2029469..2030227	+	252	162449753	-	sce1482	-	hypothetical protein
1485	 72.37	0	2030515..2032005	+	496	162449754	-	sce1483	-	major facilitator superfamily permease
1486	 71.13	0	2032002..2032292	+	96	162449755	-	sce1484	-	hypothetical protein
1487	 71.99	0	2032494..2033789	+	431	162449756	-	sce1485	-	putative Beta-xylosidase
1488	 73.15	0	2033841..2034503	+	220	162449757	-	sce1486	-	ECF family RNA polymerase sigma factor
1489	 80.16	+2	2034500..2035396	+	298	162449758	-	sce1487	-	hypothetical protein
1490	 64.74	-1	2035514..2035669	+	51	162449759	-	sce1488	-	hypothetical protein
1491	 70.11	0	2036046..2036828	+	260	162449760	-	sce1489	-	lysophospholipase L1 and related esterases/ rhamnogalacturonan acetylesterase
1492	 70.28	0	2037115..2037834	-	239	162449761	-	sce1490	-	hypothetical protein
1493	 69.33	0	2038181..2038405	-	74	162449762	-	sce1491	-	hypothetical protein
1494	 66.84	-1	2038476..2039066	-	196	162449763	-	sce1492	-	gliding motility protein
1495	 73.24	0	2039425..2040672	-	415	162449764	-	sce1493	-	hypothetical protein
1496	 74.06	0	2040881..2046835	-	1984	162449765	-	sce1494	-	protein kinase
1497	 68.62	0	2047517..2048794	+	425	162449766	-	sce1495	-	putative beta-lactamase
1498	 66.74	-1	2048864..2050165	-	433	162449767	nhaP	sce1496	-	Na+/H+ antiporter
1499	 71.34	0	2050819..2052360	+	513	162449768	gatA1	sce1497	-	putative amidase
1500	 69.91	0	2052489..2054279	-	596	162449769	-	sce1498	-	putative endoglucanase A, secreted
1501	 68.85	0	2054323..2055699	-	458	162449770	-	sce1499	-	putative secreted protein
1502	 70.79	0	2055714..2057435	-	573	162449771	-	sce1500	-	signal peptide
1503	 74.83	0	2057952..2059739	-	595	162449772	-	sce1501	-	putative adenylate/guanylate cyclase
1504	 77.02	+1	2059764..2061569	-	601	162449773	mopB1	sce1502	-	outer membrane protein
1505	 77.79	+1	2061638..2064091	+	817	162449774	-	sce1503	-	hypothetical protein
1506	 77.12	+1	2064088..2065599	+	503	162449775	-	sce1504	-	protein kinase
1507	 60.37	-2	2065753..2066403	-	216	162449776	gst4	sce1505	-	hypothetical protein
1508	 69.46	0	2067166..2067810	+	214	162449777	-	sce1506	-	putative secreted protein
1509	 67.87	0	2068063..2068725	+	220	162449778	-	sce1507	-	hypothetical protein
1510	 69.33	0	2068722..2070263	+	513	162449779	-	sce1508	-	putative spermidine synthase
1511	 66.34	-1	2070480..2070788	+	102	162449780	-	sce1509	-	hypothetical protein
1512	 66.14	-1	2070737..2072068	+	443	162449781	-	sce1510	-	putative transposase
1513	 66.12	-1	2072343..2073443	-	366	162449782	-	sce1511	-	putative esterase/lipase/thioesterase
1514	 69.79	0	2074026..2074121	-	31	162449783	-	sce1512	-	hypothetical protein
1515	 67.13	0	2074434..2075081	-	215	162449784	-	sce1513	-	hypothetical protein
1516	 68.04	0	2075224..2075805	-	193	162449785	-	sce1514	-	hypothetical protein
1517	 70.39	0	2076175..2077680	+	501	162449786	-	sce1515	-	putative endopeptidase
1518	 64.63	-1	2077725..2079200	-	491	162449787	-	sce1516	-	hypothetical protein
1519	 76.21	+1	2079249..2080202	-	317	162449788	-	sce1517	-	hypothetical protein
1520	 70.65	0	2080199..2080876	-	225	162449789	-	sce1518	-	ECF family RNA polymerase sigma factor
1521	 71.65	0	2080873..2081976	-	367	162449790	-	sce1519	-	hypothetical protein
1522	 75.51	+1	2082313..2083149	+	278	162449791	-	sce1520	-	put. DNA binding protein
1523	 69.02	0	2083330..2083923	+	197	162449792	-	sce1521	-	hypothetical protein
1524	 64.62	-1	2084037..2084378	+	113	162449793	-	sce1522	-	hypothetical protein
1525	 68.37	0	2084402..2086456	+	684	162449794	-	sce1523	-	glycogen debranching protein
1526	 70.03	0	2086521..2087531	-	336	162449795	-	sce1524	-	oxidoreductase
1527	 67.81	0	2087509..2088210	-	233	162449796	-	sce1525	-	hypothetical protein
1528	 70.30	0	2088278..2089267	-	329	162449797	-	sce1526	-	putative D-isomer specific 2-hydroxyacid dehydrogenase family protein
1529	 68.98	0	2089300..2091075	-	591	162449798	ilvD1	sce1527	-	dihydroxy-acid dehydratase
1530	 70.36	0	2091123..2092259	-	378	162449799	gcd	sce1528	-	glucose 1-dehydrogenase
1531	 67.35	0	2092515..2092952	-	145	162449800	-	sce1529	-	hypothetical protein
1532	 68.53	0	2092970..2093344	-	124	162449801	gst5	sce1530	-	hypothetical protein
1533	 67.50	0	2093472..2094677	+	401	162449802	-	sce1531	-	hypothetical protein
1534	 70.65	0	2094697..2095323	+	208	162449803	-	sce1532	-	hypothetical protein
1535	 68.73	0	2095341..2096117	+	258	162449804	-	sce1533	-	put. membrane protein
1536	 64.24	-1	2096176..2096340	+	54	162449805	-	sce1534	-	ArsR family transcriptional regulator
1537	 69.60	0	2096357..2097343	-	328	162449806	-	sce1535	-	alcohol dehydrogenase
1538	 71.00	0	2097548..2098540	-	330	162449807	-	sce1536	-	AraC family transcriptional regulator
1539	 72.32	0	2098776..2099765	-	329	162449808	-	sce1537	-	hypothetical protein
1540	 73.25	0	2099772..2101139	-	455	162449809	-	sce1538	-	hypothetical protein
1541	 68.90	0	2101314..2101760	+	148	162449810	-	sce1539	-	hypothetical protein
1542	 64.44	-1	2102001..2102450	+	149	162449811	-	sce1540	-	hypothetical protein
1543	 69.58	0	2102683..2103402	+	239	162449812	-	sce1541	-	hypothetical protein
1544	 71.93	0	2104173..2105558	+	461	162449813	-	sce1542	-	putative protease inhibitor
1545	 73.87	0	2105958..2106068	-	36	162449815	-	sce1543	-	hypothetical protein
1546	 72.43	0	2106046..2106774	+	242	162449814	-	sce1544	-	hypothetical protein
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.