IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1411	 66.67	-1	1936983..1937108	-	41	162449680	-	sce1409	-	hypothetical protein
1412	 73.11	0	1937163..1938062	-	299	162449681	-	sce1410	-	putative araC-like transcription regulator
1413	 69.89	0	1938136..1938879	+	247	162449682	-	sce1411	-	putative dehydrogenase
1414	 74.46	0	1938926..1939759	-	277	162449683	-	sce1412	-	hypothetical protein
1415	 76.95	+1	1940023..1940829	-	268	162449684	otsB	sce1413	-	trehalose-phosphatase
1416	 67.28	0	1940964..1941449	-	161	162449685	-	sce1414	-	hypothetical protein
1417	 71.22	0	1941833..1943017	+	394	162449686	-	sce1415	-	major facilitator superfamily permease
1418	 69.69	0	1943040..1944098	+	352	162449687	-	sce1416	-	ABC transport system substrate-binding protein
1419	 72.51	0	1944194..1944775	-	193	162449689	-	sce1417	-	two-component system, response regulator
1420	 72.32	0	1944743..1946158	+	471	162449688	-	sce1418	-	sensor histidine kinase
1421	 68.77	0	1946298..1948337	+	679	162449690	-	sce1419	-	hypothetical protein
1422	 67.32	0	1948443..1948898	-	151	162449691	-	sce1420	-	hypothetical protein
1423	 75.54	+1	1949479..1950786	-	435	162449692	-	sce1421	-	MFP family efflux transporter
1424	 69.11	0	1950783..1954016	-	1077	162449693	-	sce1422	-	multidrug efflux membrane protein
1425	 74.29	0	1954077..1955060	+	327	162449694	-	sce1423	-	LysR family transcriptional regulator
1426	 75.12	0	1955086..1957251	-	721	162449695	purR	sce1424	-	HTH-type transcriptional repressor purR
1427	 73.23	0	1957564..1958934	-	456	162449696	-	sce1425	-	hypothetical protein
1428	 75.19	+1	1958931..1960139	-	402	162449697	-	sce1426	-	hypothetical protein
1429	 77.50	+1	1960314..1960904	-	196	162449698	-	sce1427	-	hypothetical protein
1430	 67.21	0	1961055..1962533	+	492	162449699	-	sce1428	-	hypothetical protein
1431	 73.86	0	1962592..1964286	+	564	162449700	-	sce1429	-	hypothetical protein
1432	 66.38	-1	1964479..1965876	+	465	162449701	-	sce1430	-	hypothetical protein
1433	 69.81	0	1965873..1966667	+	264	162449702	-	sce1431	-	hypothetical protein
1434	 78.32	+1	1966671..1971692	-	1673	162449703	-	sce1432	-	protein kinase
1435	 77.07	+1	1971791..1972492	+	233	162449704	-	sce1433	-	hypothetical protein
1436	 69.38	0	1972588..1973139	+	183	162449705	-	sce1434	-	hypothetical protein
1437	 70.64	0	1973425..1975539	+	704	162449706	-	sce1435	-	LacI family transcription regulator
1438	 71.64	0	1975569..1976894	-	441	162449707	-	sce1436	-	hypothetical protein
1439	 68.63	0	1977202..1978629	-	475	162449708	nrfA	sce1437	-	nitrite reductase (cytochrome; ammonia-forming)
1440	 69.26	0	1978660..1979199	-	179	162449709	-	sce1438	-	small subunit of cytochrome c nitrite reductase
1441	 69.64	0	1979642..1980886	+	414	162449710	-	sce1439	-	major facilitator superfamily permease
1442	 67.10	0	1981415..1983730	+	771	162449711	-	sce1440	-	putative terpene cyclase
1443	 66.95	0	1983752..1985158	+	468	162449712	-	sce1441	-	putative nucleotide-binding protein
1444	 66.81	-1	1985255..1986655	+	466	162449713	-	sce1442	-	putative nucleotide-binding protein
1445	 68.21	0	1986670..1988355	+	561	162449714	-	sce1443	-	membrane channel protein
1446	 71.78	0	1988511..1991072	+	853	162449715	pepN1	sce1444	-	aminopeptidase
1447	 73.88	0	1991393..1992625	+	410	162449716	-	sce1445	-	hypothetical protein
1448	 68.56	0	1992629..1993156	-	175	162449717	-	sce1446	-	hypothetical protein
1449	 68.54	0	1993677..1994423	+	248	162449718	-	sce1447	-	putative secreted protein
1450	 65.04	-1	1994434..1995234	+	266	162449719	-	sce1448	-	putative secreted protein
1451	 72.06	0	1995209..1995709	+	166	162449720	-	sce1449	-	putative secreted protein
1452	 71.56	0	1995729..1996832	-	367	162449721	-	sce1450	-	hypothetical protein
1453	 72.78	0	1996960..1997613	-	217	162449722	-	sce1451	-	hypothetical protein
1454	 65.03	-1	1997610..1997975	-	121	162449723	-	sce1452	-	hypothetical protein
1455	 73.55	0	1998132..1999307	-	391	162449724	-	sce1453	-	concanavalin A-like lectin/glucanase-domain-containing protein
1456	 72.45	0	1999433..2000314	-	293	162449725	-	sce1454	-	putative galactose mutarotase
1457	 78.41	+1	2000331..2000645	-	104	162449726	-	sce1455	-	hypothetical protein
1458	 68.43	0	2001141..2001821	+	226	162449727	-	sce1456	-	hypothetical protein
1459	 68.98	0	2001873..2002391	-	172	162449728	-	sce1457	-	hypothetical protein
1460	 75.19	+1	2002517..2003443	+	308	162449729	-	sce1458	-	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase
1461	 74.53	0	2003567..2005588	-	673	162449730	-	sce1459	-	MutS-like mismatch repair protein, ATPases
1462	 69.17	0	2005636..2006634	+	332	162449731	tal1	sce1460	-	transaldolase B
1463	 65.89	-1	2007062..2007703	+	213	162449732	-	sce1461	-	3-demethylubiquinone-9 3-methyltransferase
1464	 69.33	0	2007700..2008563	+	287	162449733	-	sce1462	-	hypothetical protein
1465	 69.20	0	2008556..2009620	+	354	162449734	-	sce1463	-	hypothetical protein
1466	 70.35	0	2009774..2010778	+	334	162449735	-	sce1464	-	hypothetical protein
1467	 67.71	0	2011080..2011367	+	95	162449736	acpP1	sce1465	-	hypothetical protein
1468	 71.22	0	2011364..2012308	+	314	162449737	-	sce1466	-	hypothetical protein
1469	 73.54	0	2012305..2013978	+	557	162449738	-	sce1467	-	putative Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
1470	 66.50	-1	2014536..2015765	-	409	162449739	celA	sce1468	-	hypothetical protein
1471	 70.26	0	2016260..2017735	-	491	162449740	-	sce1469	-	hypothetical protein
1472	 69.42	0	2017916..2019511	+	531	162449741	-	sce1470	-	MATE efflux family protein
1473	 71.23	0	2019600..2020256	-	218	162449742	-	sce1471	-	hypothetical protein
1474	 73.06	0	2020370..2021824	-	484	162449743	-	sce1472	-	hypothetical protein
1475	 77.11	+1	2021844..2022245	-	133	162449744	-	sce1473	-	hypothetical protein
1476	 70.97	0	2022341..2023594	-	417	162449745	-	sce1474	-	two-component sensor histidine kinase
1477	 69.58	0	2024096..2024473	-	125	162449746	-	sce1475	-	hypothetical protein
1478	 69.12	0	2024449..2025018	-	189	162449747	-	sce1476	-	hypothetical protein
1479	 67.40	0	2025381..2025791	-	136	162449748	-	sce1477	-	hypothetical protein
1480	 74.61	0	2025808..2026386	-	192	162449749	-	sce1478	-	hypothetical protein
1481	 71.39	0	2026358..2027161	-	267	162449750	parA1	sce1479	-	chromosome partitioning protein
1482	 70.87	0	2027158..2028108	-	316	162449751	-	sce1480	-	hypothetical protein
1483	 74.06	0	2028033..2028776	-	247	162449752	-	sce1481	-	TRP-like protein
1484	 64.95	-1	2029469..2030227	+	252	162449753	-	sce1482	-	hypothetical protein
1485	 72.37	0	2030515..2032005	+	496	162449754	-	sce1483	-	major facilitator superfamily permease
1486	 71.13	0	2032002..2032292	+	96	162449755	-	sce1484	-	hypothetical protein
1487	 71.99	0	2032494..2033789	+	431	162449756	-	sce1485	-	putative Beta-xylosidase
1488	 73.15	0	2033841..2034503	+	220	162449757	-	sce1486	-	ECF family RNA polymerase sigma factor
1489	 80.16	+2	2034500..2035396	+	298	162449758	-	sce1487	-	hypothetical protein
1490	 64.74	-1	2035514..2035669	+	51	162449759	-	sce1488	-	hypothetical protein
1491	 70.11	0	2036046..2036828	+	260	162449760	-	sce1489	-	lysophospholipase L1 and related esterases/ rhamnogalacturonan acetylesterase
1492	 70.28	0	2037115..2037834	-	239	162449761	-	sce1490	-	hypothetical protein
1493	 69.33	0	2038181..2038405	-	74	162449762	-	sce1491	-	hypothetical protein
1494	 66.84	-1	2038476..2039066	-	196	162449763	-	sce1492	-	gliding motility protein
1495	 73.24	0	2039425..2040672	-	415	162449764	-	sce1493	-	hypothetical protein
1496	 74.06	0	2040881..2046835	-	1984	162449765	-	sce1494	-	protein kinase
1497	 68.62	0	2047517..2048794	+	425	162449766	-	sce1495	-	putative beta-lactamase
1498	 66.74	-1	2048864..2050165	-	433	162449767	nhaP	sce1496	-	Na+/H+ antiporter
1499	 71.34	0	2050819..2052360	+	513	162449768	gatA1	sce1497	-	putative amidase
1500	 69.91	0	2052489..2054279	-	596	162449769	-	sce1498	-	putative endoglucanase A, secreted
1501	 68.85	0	2054323..2055699	-	458	162449770	-	sce1499	-	putative secreted protein
1502	 70.79	0	2055714..2057435	-	573	162449771	-	sce1500	-	signal peptide
1503	 74.83	0	2057952..2059739	-	595	162449772	-	sce1501	-	putative adenylate/guanylate cyclase
1504	 77.02	+1	2059764..2061569	-	601	162449773	mopB1	sce1502	-	outer membrane protein
1505	 77.79	+1	2061638..2064091	+	817	162449774	-	sce1503	-	hypothetical protein
1506	 77.12	+1	2064088..2065599	+	503	162449775	-	sce1504	-	protein kinase
1507	 60.37	-2	2065753..2066403	-	216	162449776	gst4	sce1505	-	hypothetical protein
1508	 69.46	0	2067166..2067810	+	214	162449777	-	sce1506	-	putative secreted protein
1509	 67.87	0	2068063..2068725	+	220	162449778	-	sce1507	-	hypothetical protein
1510	 69.33	0	2068722..2070263	+	513	162449779	-	sce1508	-	putative spermidine synthase
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.