IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1363	 74.12	0	1876853..1878073	+	406	162449632	-	sce1361	-	hypothetical protein
1364	 60.92	-2	1880528..1881241	+	237	162449633	-	sce1362	-	putative secreted protein
1365	 67.51	0	1881620..1882690	+	356	162449634	-	sce1363	-	hypothetical protein
1366	 75.74	+1	1882811..1884022	+	403	162449635	dinP	sce1364	-	DNA polymerase IV
1367	 70.73	0	1884052..1885305	+	417	162449636	-	sce1365	-	hypothetical protein
1368	 72.65	0	1885351..1886553	+	400	162449637	-	sce1366	-	major facilitator superfamily permease
1369	 67.52	0	1886564..1887034	+	156	162449638	-	sce1367	-	hypothetical protein
1370	 70.99	0	1887387..1888589	+	400	162449639	-	sce1368	-	PE-PGRS family protein
1371	 73.18	0	1889148..1890437	+	429	162449640	-	sce1369	-	PE-PGRS family protein
1372	 65.75	-1	1890682..1891227	+	181	162449641	-	sce1370	-	dihydrofolate reductase family protein
1373	 73.99	0	1891503..1892636	+	377	162449642	-	sce1371	-	PE-PGRS family protein
1374	 74.88	0	1892914..1893777	+	287	162449643	-	sce1372	-	hypothetical protein
1375	 76.73	+1	1893755..1894201	+	148	162449644	-	sce1373	-	hypothetical protein
1376	 70.02	0	1894231..1895154	-	307	162449645	yedI	sce1374	-	hypothetical protein
1377	 70.50	0	1895345..1896256	-	303	162449646	-	sce1375	-	GTPase
1378	 75.11	0	1896287..1896997	-	236	162449647	dsbA	sce1376	-	DSBA oxidoreductase
1379	 71.39	0	1897616..1898842	+	408	162449648	-	sce1377	-	hypothetical protein
1380	 70.69	0	1899044..1899763	-	239	162449649	-	sce1378	-	acetyltransferase
1381	 75.68	+1	1899828..1901525	-	565	162449650	-	sce1379	-	hypothetical protein
1382	 74.42	0	1901663..1903312	-	549	162449651	-	sce1380	-	protein kinase
1383	 75.71	+1	1903586..1904359	-	257	162449652	-	sce1381	-	putative nuclease
1384	 72.41	0	1904475..1904909	+	144	162449653	rimI1	sce1382	-	hypothetical protein
1385	 68.58	0	1905179..1907011	+	610	162449654	-	sce1383	-	two-component sensor histidine kinase
1386	 71.05	0	1907195..1908313	+	372	162449655	-	sce1384	-	putative secreted protein
1387	 76.22	+1	1908356..1908931	-	191	162449656	-	sce1385	-	TetR family transcriptional regulator
1388	 72.79	0	1908942..1909529	-	195	162449657	nodL	sce1386	-	galactoside O-acetyltransferase
1389	 70.04	0	1910553..1912121	-	522	162449658	abgT	sce1387	-	putative integral membrane efflux protein
1390	 71.14	0	1912271..1913566	-	431	162449659	-	sce1388	-	hypothetical protein
1391	 69.25	0	1913572..1914537	-	321	162449660	-	sce1389	-	putative regulatory protein
1392	 75.38	+1	1914534..1916633	-	699	162449661	-	sce1390	-	hypothetical protein
1393	 73.81	0	1916630..1917427	-	265	162449662	-	sce1391	-	hypothetical protein
1394	 72.07	0	1917424..1918404	-	326	162449663	-	sce1392	-	hypothetical protein
1395	 73.52	0	1918401..1919261	-	286	162449664	-	sce1393	-	hypothetical protein
1396	 67.72	0	1919278..1919847	-	189	162449665	-	sce1394	-	hypothetical protein
1397	 66.43	-1	1920226..1921071	-	281	162449666	-	sce1395	-	hypothetical protein
1398	 72.19	0	1921628..1923853	+	741	162449667	-	sce1396	-	CheA-like histidine kinase
1399	 68.37	0	1923858..1924268	+	136	162449668	-	sce1397	-	response regulator
1400	 68.75	0	1924265..1924840	+	191	162449669	-	sce1398	-	hypothetical protein
1401	 71.36	0	1924841..1927270	+	809	162449670	-	sce1399	-	hypothetical protein
1402	 77.05	+1	1927267..1927632	+	121	162449671	-	sce1400	-	hypothetical protein
1403	 71.20	0	1928148..1929404	+	418	162449672	-	sce1401	-	anti-anti-sigma factor protein
1404	 64.59	-1	1929528..1930634	+	368	162449673	-	sce1402	-	sugar-binding protein
1405	 69.31	0	1930862..1932070	+	402	162449674	-	sce1403	-	anti-anti-sigma factor protein
1406	 67.30	0	1932217..1932534	+	105	162449675	-	sce1404	-	ArsR family transcriptional regulator
1407	 67.92	0	1932531..1932929	+	132	162449676	-	sce1405	-	hypothetical protein
1408	 68.16	0	1933069..1934409	-	446	162449677	-	sce1406	-	hypothetical protein
1409	 71.06	0	1934411..1935457	-	348	162449678	-	sce1407	-	hypothetical protein
1410	 72.01	0	1935489..1936949	-	486	162449679	-	sce1408	-	protein kinase
1411	 66.67	-1	1936983..1937108	-	41	162449680	-	sce1409	-	hypothetical protein
1412	 73.11	0	1937163..1938062	-	299	162449681	-	sce1410	-	putative araC-like transcription regulator
1413	 69.89	0	1938136..1938879	+	247	162449682	-	sce1411	-	putative dehydrogenase
1414	 74.46	0	1938926..1939759	-	277	162449683	-	sce1412	-	hypothetical protein
1415	 76.95	+1	1940023..1940829	-	268	162449684	otsB	sce1413	-	trehalose-phosphatase
1416	 67.28	0	1940964..1941449	-	161	162449685	-	sce1414	-	hypothetical protein
1417	 71.22	0	1941833..1943017	+	394	162449686	-	sce1415	-	major facilitator superfamily permease
1418	 69.69	0	1943040..1944098	+	352	162449687	-	sce1416	-	ABC transport system substrate-binding protein
1419	 72.51	0	1944194..1944775	-	193	162449689	-	sce1417	-	two-component system, response regulator
1420	 72.32	0	1944743..1946158	+	471	162449688	-	sce1418	-	sensor histidine kinase
1421	 68.77	0	1946298..1948337	+	679	162449690	-	sce1419	-	hypothetical protein
1422	 67.32	0	1948443..1948898	-	151	162449691	-	sce1420	-	hypothetical protein
1423	 75.54	+1	1949479..1950786	-	435	162449692	-	sce1421	-	MFP family efflux transporter
1424	 69.11	0	1950783..1954016	-	1077	162449693	-	sce1422	-	multidrug efflux membrane protein
1425	 74.29	0	1954077..1955060	+	327	162449694	-	sce1423	-	LysR family transcriptional regulator
1426	 75.12	0	1955086..1957251	-	721	162449695	purR	sce1424	-	HTH-type transcriptional repressor purR
1427	 73.23	0	1957564..1958934	-	456	162449696	-	sce1425	-	hypothetical protein
1428	 75.19	+1	1958931..1960139	-	402	162449697	-	sce1426	-	hypothetical protein
1429	 77.50	+1	1960314..1960904	-	196	162449698	-	sce1427	-	hypothetical protein
1430	 67.21	0	1961055..1962533	+	492	162449699	-	sce1428	-	hypothetical protein
1431	 73.86	0	1962592..1964286	+	564	162449700	-	sce1429	-	hypothetical protein
1432	 66.38	-1	1964479..1965876	+	465	162449701	-	sce1430	-	hypothetical protein
1433	 69.81	0	1965873..1966667	+	264	162449702	-	sce1431	-	hypothetical protein
1434	 78.32	+1	1966671..1971692	-	1673	162449703	-	sce1432	-	protein kinase
1435	 77.07	+1	1971791..1972492	+	233	162449704	-	sce1433	-	hypothetical protein
1436	 69.38	0	1972588..1973139	+	183	162449705	-	sce1434	-	hypothetical protein
1437	 70.64	0	1973425..1975539	+	704	162449706	-	sce1435	-	LacI family transcription regulator
1438	 71.64	0	1975569..1976894	-	441	162449707	-	sce1436	-	hypothetical protein
1439	 68.63	0	1977202..1978629	-	475	162449708	nrfA	sce1437	-	nitrite reductase (cytochrome; ammonia-forming)
1440	 69.26	0	1978660..1979199	-	179	162449709	-	sce1438	-	small subunit of cytochrome c nitrite reductase
1441	 69.64	0	1979642..1980886	+	414	162449710	-	sce1439	-	major facilitator superfamily permease
1442	 67.10	0	1981415..1983730	+	771	162449711	-	sce1440	-	putative terpene cyclase
1443	 66.95	0	1983752..1985158	+	468	162449712	-	sce1441	-	putative nucleotide-binding protein
1444	 66.81	-1	1985255..1986655	+	466	162449713	-	sce1442	-	putative nucleotide-binding protein
1445	 68.21	0	1986670..1988355	+	561	162449714	-	sce1443	-	membrane channel protein
1446	 71.78	0	1988511..1991072	+	853	162449715	pepN1	sce1444	-	aminopeptidase
1447	 73.88	0	1991393..1992625	+	410	162449716	-	sce1445	-	hypothetical protein
1448	 68.56	0	1992629..1993156	-	175	162449717	-	sce1446	-	hypothetical protein
1449	 68.54	0	1993677..1994423	+	248	162449718	-	sce1447	-	putative secreted protein
1450	 65.04	-1	1994434..1995234	+	266	162449719	-	sce1448	-	putative secreted protein
1451	 72.06	0	1995209..1995709	+	166	162449720	-	sce1449	-	putative secreted protein
1452	 71.56	0	1995729..1996832	-	367	162449721	-	sce1450	-	hypothetical protein
1453	 72.78	0	1996960..1997613	-	217	162449722	-	sce1451	-	hypothetical protein
1454	 65.03	-1	1997610..1997975	-	121	162449723	-	sce1452	-	hypothetical protein
1455	 73.55	0	1998132..1999307	-	391	162449724	-	sce1453	-	concanavalin A-like lectin/glucanase-domain-containing protein
1456	 72.45	0	1999433..2000314	-	293	162449725	-	sce1454	-	putative galactose mutarotase
1457	 78.41	+1	2000331..2000645	-	104	162449726	-	sce1455	-	hypothetical protein
1458	 68.43	0	2001141..2001821	+	226	162449727	-	sce1456	-	hypothetical protein
1459	 68.98	0	2001873..2002391	-	172	162449728	-	sce1457	-	hypothetical protein
1460	 75.19	+1	2002517..2003443	+	308	162449729	-	sce1458	-	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase
1461	 74.53	0	2003567..2005588	-	673	162449730	-	sce1459	-	MutS-like mismatch repair protein, ATPases
1462	 69.17	0	2005636..2006634	+	332	162449731	tal1	sce1460	-	transaldolase B
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.