IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
92	 70.05	0	127945..129066	-	373	162448361	-	sce0091	-	hypothetical protein
93	 63.98	-1	129269..129715	-	148	162448362	-	sce0092	-	hypothetical protein
94	 72.22	0	129992..130657	-	221	162448363	-	sce0093	-	hypothetical protein
95	 71.85	0	130728..131711	+	327	162448364	-	sce0094	-	hypothetical protein
96	 71.79	0	131794..132612	+	272	162448365	-	sce0095	-	hypothetical protein
97	 62.26	-2	132730..133206	+	158	162448366	-	sce0096	-	hypothetical protein
98	 67.94	0	133239..134099	-	286	162448367	-	sce0097	-	proline iminopeptidase
99	 73.19	0	134226..135038	-	270	162448368	-	sce0098	-	putative carboxymethylenebutenolidase
100	 66.67	-1	135035..135451	-	138	162448369	-	sce0099	-	PPE family protein
101	 73.47	0	135403..136254	-	283	162448370	-	sce0100	-	putative carboxymethylenebutenolidase
102	 70.63	0	136251..137234	-	327	162448371	tauD1	sce0101	-	putative taurine dioxygenase
103	 74.89	0	138053..138928	-	291	162448372	-	sce0102	-	hypothetical protein
104	 68.84	0	138959..139372	-	137	162448373	-	sce0103	-	hypothetical protein
105	 77.08	+1	139385..140143	-	252	162448374	-	sce0104	-	hypothetical protein
106	 79.37	+2	140188..142281	-	697	162448375	-	sce0105	-	hypothetical protein
107	 78.05	+1	142197..144533	-	778	162448376	-	sce0106	-	hypothetical protein
108	 72.69	0	144591..147296	-	901	162448377	-	sce0107	-	hypothetical protein
109	 71.94	0	147293..148753	-	486	162448378	-	sce0108	-	hypothetical protein
110	 75.19	+1	148916..150511	-	531	162448379	-	sce0109	-	hypothetical protein
111	 68.23	0	150812..151387	+	191	162448380	-	sce0110	-	hypothetical protein
112	 69.25	0	151480..153801	+	773	162448381	-	sce0111	-	Rhs family carbohydrate-binding protein
113	 66.05	-1	153798..155090	+	430	162448382	-	sce0112	-	hypothetical protein
114	 66.08	-1	155341..156543	+	400	162448383	-	sce0113	-	hypothetical protein
115	 67.06	0	156701..157972	+	423	162448384	-	sce0114	-	hypothetical protein
116	 67.75	0	158075..159370	+	431	162448385	-	sce0115	-	hypothetical protein
117	 77.21	+1	159493..161238	+	581	162448386	-	sce0116	-	putative amidase
118	 71.26	0	161235..161930	+	231	162448387	-	sce0117	-	hypothetical protein
119	 74.64	0	161995..162408	-	137	162448388	-	sce0118	-	hypothetical protein
120	 72.14	0	162446..166753	-	1435	162448389	-	sce0119	-	putative cell surface protein
121	 71.79	0	166750..168603	-	617	162448390	-	sce0120	-	putative ompA family protein
122	 67.63	0	169078..169491	-	137	162448391	-	sce0121	-	hypothetical protein
123	 69.95	0	169545..170762	+	405	162448392	cypA1	sce0122	-	cytochrome P450 CYP109C1
124	 73.95	0	171490..172491	+	333	162448393	-	sce0123	-	hypothetical protein
125	 71.13	0	172643..174481	+	612	162448394	-	sce0124	-	putative sodium:solute transport protein
126	 67.58	0	174594..176240	+	548	162448395	yagH	sce0125	-	14-beta-D-xylan xylohydrolase
127	 76.26	+1	176296..177702	-	468	162448396	-	sce0126	-	hypothetical protein
128	 70.83	0	178072..180162	-	696	162448397	metG1	sce0127	-	hypothetical protein
129	 69.79	0	180218..181081	-	287	162448398	-	sce0128	-	hypothetical protein
130	 65.07	-1	181318..182949	-	543	162448399	-	sce0129	-	hypothetical protein
131	 67.06	0	183368..183874	+	168	162448400	-	sce0130	-	hypothetical protein
132	 65.73	-1	183933..184253	-	106	162448401	-	sce0131	-	hypothetical protein
133	 68.09	0	184391..185443	-	350	162448402	pflA1	sce0132	-	pyruvate formate lyase activating enzyme
134	 71.38	0	185535..186956	-	473	162448403	-	sce0133	-	hypothetical protein
135	 74.53	0	187007..188023	+	338	162448404	-	sce0134	-	alcohol dehydrogenase, zinc-containing
136	 76.89	+1	188045..189913	-	622	162448405	-	sce0135	-	hypothetical protein
137	 69.71	0	189962..190948	-	328	162448406	-	sce0136	-	hypothetical protein
138	 76.02	+1	191619..192206	-	195	162448407	-	sce0137	-	hypothetical protein
139	 62.35	-2	192208..192462	-	84	162448408	-	sce0138	-	hypothetical protein
140	 76.24	+1	192625..193533	+	302	162448409	-	sce0139	-	hypothetical protein
141	 73.87	0	193536..194312	+	258	162448410	-	sce0140	-	putative secreted protein
142	 75.42	+1	194309..195211	+	300	162448411	-	sce0141	-	hypothetical protein
143	 80.54	+2	195208..195762	+	184	162448412	-	sce0142	-	hypothetical protein
144	 78.11	+1	196892..198928	+	678	162448413	-	sce0143	-	hypothetical protein
145	 68.97	0	199500..200717	-	405	162448414	-	sce0144	-	hypothetical protein
146	 69.96	0	201652..201894	-	80	162448415	-	sce0145	-	hypothetical protein
147	 71.66	0	201891..202451	-	186	162448416	-	sce0146	-	hypothetical protein
148	 65.18	-1	203230..204171	-	313	162448417	-	sce0147	-	hypothetical protein
149	 69.92	0	204527..205540	+	337	162448418	-	sce0148	-	hypothetical protein
150	 57.72	-2	205673..206164	+	163	162448419	-	sce0149	-	hypothetical protein
151	 53.49	-2	206161..207207	+	348	162448420	-	sce0150	-	protein kinase
152	 72.60	0	207608..208231	-	207	162448421	-	sce0151	-	hypothetical protein
153	 76.33	+1	208661..211546	+	961	162448422	-	sce0152	-	polynucleotide adenyltransferase
154	 69.79	0	211560..212327	-	255	162448423	-	sce0153	-	putative secreted protein
155	 72.34	0	212456..213283	-	275	162448424	-	sce0154	-	hypothetical protein
156	 73.15	0	213610..214272	-	220	162448425	-	sce0155	-	putative secreted protein
157	 72.63	0	214412..215836	-	474	162448426	dapE1	sce0156	-	succinyl-diaminopimelate desuccinylase
158	 72.78	0	216066..217325	-	419	162448427	-	sce0157	-	hypothetical protein
159	 64.49	-1	217577..218311	+	244	162448428	-	sce0158	-	hypothetical protein
160	 68.09	0	218642..219346	+	234	162448429	pcxB	sce0159	-	dioxygenase
161	 70.78	0	219343..219780	+	145	162448430	-	sce0160	-	hypothetical protein
162	 70.49	0	219835..220671	-	278	162448431	-	sce0161	-	AraC family transcriptional regulator
163	 68.33	0	220894..221553	-	219	162448432	-	sce0162	-	hypothetical protein
164	 71.11	0	221575..222339	-	254	162448433	-	sce0163	-	hypothetical protein
165	 73.37	0	222568..223536	+	322	162448434	-	sce0164	-	LysR family transcriptional regulator
166	 70.25	0	223835..225007	+	390	162448435	-	sce0165	-	ABC-type transporter substrate-binding protein
167	 73.93	0	225004..225912	+	302	162448436	-	sce0166	-	ABC transporter permease protein
168	 75.92	+1	225888..226676	+	262	162448437	-	sce0167	-	ABC transporter ATP-binding protein
169	 69.92	0	226673..228025	+	450	162448438	-	sce0168	-	monooxygenase
170	 69.84	0	228628..229950	+	440	162448439	-	sce0169	-	putative peptidase
171	 65.73	-1	230107..230745	+	212	162448440	-	sce0170	-	peroxiredoxin
172	 69.49	0	230745..232055	+	436	162448441	-	sce0171	-	hypothetical protein
173	 69.20	0	232145..232735	-	196	162448442	-	sce0172	-	hypothetical protein
174	 68.87	0	232871..233278	-	135	162448443	-	sce0173	-	hypothetical protein
175	 73.30	0	233468..234160	-	230	162448444	-	sce0174	-	hypothetical protein
176	 78.57	+1	234409..235122	+	237	162448445	-	sce0175	-	IclR family transcriptional regulator
177	 74.41	0	235128..236018	+	296	162448446	ilvE1	sce0176	-	branched-chain-amino-acid transaminase
178	 70.15	0	236097..237044	-	315	162448447	-	sce0177	-	LysR family transcriptional regulator
179	 68.25	0	237683..239257	+	524	162448448	-	sce0178	-	hypothetical protein
180	 71.67	0	239412..241349	+	645	162448449	msbA3	sce0179	-	carbohydrate ABC transporter
181	 72.02	0	241346..243268	+	640	162448450	msbA4	sce0180	-	carbohydrate ABC transporter
182	 69.95	0	243254..243679	-	141	162448451	-	sce0181	-	organic hydroperoxide resistance protein
183	 68.10	0	243952..245211	-	419	162448452	-	sce0182	-	anti-anti sigma factor protein
184	 73.81	0	245444..246199	-	251	162448453	gst1	sce0183	-	hypothetical protein
185	 70.36	0	246300..249602	-	1100	162448454	-	sce0184	-	protein kinase
186	 70.53	0	249807..250790	+	327	162448455	-	sce0185	-	hypothetical protein
187	 71.70	0	250851..253391	-	846	162448456	-	sce0186	-	two-component histidine kinase
188	 67.49	0	253911..254879	+	322	162448457	-	sce0187	-	transposase
189	 74.32	0	256112..256477	+	121	162448458	-	sce0188	-	hypothetical protein
190	 71.58	0	256749..257114	+	121	162448459	-	sce0189	-	hypothetical protein
191	 73.08	0	257139..258479	-	446	162448460	-	sce0190	-	RNA polymerase sigma factor
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.