IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1287	 74.18	0	1781418..1782389	+	323	162449556	-	sce1285	-	hypothetical protein
1288	 72.25	0	1782404..1782976	+	190	162449557	-	sce1286	-	RNA polymerase ECF-type sigma factor
1289	 65.17	-1	1783104..1783436	+	110	162449558	-	sce1287	-	hypothetical protein
1290	 71.88	0	1784342..1785205	-	287	162449559	-	sce1288	-	hypothetical protein
1291	 64.40	-1	1785334..1785906	-	190	162449560	-	sce1289	-	hypothetical protein
1292	 69.53	0	1785999..1786871	-	290	162449561	-	sce1290	-	hypothetical protein
1293	 72.68	0	1786896..1788374	-	492	162449562	-	sce1291	-	hypothetical protein
1294	 72.46	0	1788368..1789471	-	367	162449563	-	sce1292	-	putative secreted protein
1295	 67.04	0	1789831..1790364	+	177	162449564	-	sce1293	-	hypothetical protein
1296	 59.82	-2	1790361..1790915	+	184	162449565	-	sce1294	-	hypothetical protein
1297	 59.14	-2	1790912..1791190	+	92	162449566	-	sce1295	-	hypothetical protein
1298	 72.57	0	1791511..1792509	-	332	162449567	-	sce1296	-	two-component sensor histidine kinase
1299	 69.19	0	1792676..1793506	-	276	162449568	-	sce1297	-	hypothetical protein
1300	 68.33	0	1793421..1794503	-	360	162449569	-	sce1298	-	hypothetical protein
1301	 71.01	0	1794583..1795479	-	298	162449570	-	sce1299	-	hypothetical protein
1302	 72.04	0	1795773..1796852	+	359	162449571	-	sce1300	-	glycosyltransferase
1303	 74.26	0	1796849..1798060	+	403	162449572	-	sce1301	-	glycosyltransferase
1304	 68.52	0	1798188..1799321	-	377	162449573	-	sce1302	-	hypothetical protein
1305	 68.22	0	1800273..1802402	+	709	162449574	-	sce1303	-	glycogen operon protein
1306	 73.48	0	1802413..1803732	-	439	162449575	-	sce1304	-	GNAT family acetyltransferase
1307	 70.16	0	1803738..1804625	-	295	162449576	-	sce1305	-	protein kinase
1308	 77.16	+1	1804722..1806512	-	596	162449577	-	sce1306	-	assimilatory nitrite reductase small subunit
1309	 70.01	0	1806649..1807815	-	388	162449578	-	sce1307	-	hypothetical protein
1310	 71.57	0	1808009..1809967	+	652	162449579	-	sce1308	-	Terpenoid cylases/protein prenyltransferase-domain-containing protein
1311	 61.79	-2	1810000..1810389	+	129	162449580	-	sce1309	-	hypothetical protein
1312	 70.49	0	1810455..1811291	-	278	162449581	-	sce1310	-	putative secreted protein
1313	 72.36	0	1811405..1812775	-	456	162449582	-	sce1311	-	monooxygenase
1314	 71.15	0	1813137..1814162	+	341	162449583	-	sce1312	-	hypothetical protein
1315	 68.65	0	1814268..1814771	+	167	162449584	-	sce1313	-	putative carbonate hydratase
1316	 72.56	0	1815224..1815766	+	180	162449585	-	sce1314	-	hypothetical protein
1317	 74.90	0	1815763..1816722	+	319	162449586	-	sce1315	-	phosphotransferase
1318	 72.89	0	1817089..1818117	+	342	162449587	-	sce1316	-	hypothetical protein
1319	 66.67	-1	1818247..1819149	+	300	162449588	-	sce1317	-	putative positive regulator of sigma-B
1320	 75.10	0	1819576..1819824	+	82	162449589	-	sce1318	-	putative secreted protein
1321	 67.78	0	1819957..1821486	+	509	162449590	-	sce1319	-	hypothetical protein
1322	 68.82	0	1821566..1823143	+	525	162449591	-	sce1320	-	putative secreted protein
1323	 65.37	-1	1823304..1824386	+	360	162449592	-	sce1321	-	ABC transporter substrate-binding protein
1324	 70.96	0	1824451..1825311	+	286	162449593	-	sce1322	-	ABC transporter permease protein
1325	 70.63	0	1825359..1826141	+	260	162449594	-	sce1323	-	ABC transporter permease protein
1326	 69.18	0	1826211..1826966	+	251	162449595	-	sce1324	-	ABC transporter ATP-binding protein
1327	 71.62	0	1827113..1828282	+	389	162449596	-	sce1325	-	sigma-54 dependent transcriptional regulator
1328	 73.43	0	1828370..1829374	-	334	162449597	-	sce1326	-	hypothetical protein
1329	 71.24	0	1829648..1830106	-	152	162449598	-	sce1327	-	thioredoxin
1330	 73.20	0	1830226..1830684	-	152	162449599	-	sce1328	-	hypothetical protein
1331	 77.86	+1	1830768..1831571	-	267	162449600	-	sce1329	-	putative secreted protein
1332	 75.00	0	1831568..1833211	-	547	162449601	-	sce1330	-	putative secreted zinc protease
1333	 71.15	0	1833216..1834976	-	586	162449602	-	sce1331	-	putative zinc protease
1334	 72.15	0	1835078..1837612	-	844	162449603	-	sce1332	-	lysyl oxidase-like
1335	 73.41	0	1837717..1838502	+	261	162449604	fabG1	sce1333	-	3-oxoacyl-[acyl-carrier-protein] reductase
1336	 70.04	0	1838615..1840954	-	779	162449605	-	sce1334	-	hypothetical protein
1337	 68.06	0	1841007..1842584	-	525	162449606	-	sce1335	-	hypothetical protein
1338	 70.49	0	1842655..1844277	-	540	162449607	-	sce1336	-	hypothetical protein
1339	 71.91	0	1844443..1845357	+	304	162449608	-	sce1337	-	hypothetical protein
1340	 76.76	+1	1845361..1846380	-	339	162449609	-	sce1338	-	hypothetical protein
1341	 80.31	+2	1846390..1847298	-	302	162449610	-	sce1339	-	hypothetical protein
1342	 71.77	0	1847291..1847917	-	208	162449611	-	sce1340	-	RNA polymerase ECF-type sigma factor
1343	 72.29	0	1847914..1848144	-	76	162449612	-	sce1341	-	hypothetical protein
1344	 68.40	0	1849048..1849566	+	172	162449613	-	sce1342	-	hypothetical protein
1345	 66.67	-1	1850373..1851461	+	362	162449614	-	sce1343	-	hypothetical protein
1346	 69.27	0	1851452..1852489	+	345	162449615	-	sce1344	-	hypothetical protein
1347	 67.75	0	1852657..1853118	+	153	162449616	-	sce1345	-	response regulator
1348	 69.23	0	1853124..1855973	+	949	162449617	-	sce1346	-	hybrid histidine kinase
1349	 68.06	0	1856145..1858223	+	692	162449618	-	sce1347	-	putative outer membrane protein
1350	 66.30	-1	1858485..1859864	-	459	162449619	-	sce1348	-	ABC-type branched-chain amino acid transport system, periplasmic component
1351	 78.37	+1	1860227..1861927	+	566	162449620	-	sce1349	-	hypothetical protein
1352	 74.77	0	1862179..1863375	-	398	162449621	-	sce1350	-	putative secreted protein
1353	 61.29	-2	1864134..1864226	+	30	162449622	kdpF	sce1351	-	putative membrane protein of the Kdp complex
1354	 69.82	0	1864223..1865965	+	580	162449623	kdpA	sce1352	-	potassium-transporting ATPase A chain
1355	 71.87	0	1865962..1868154	+	730	162449624	kdpB	sce1353	-	potassium-transporting ATPase B chain
1356	 76.44	+1	1868175..1868747	+	190	162449625	kdpC	sce1354	-	potassium-transporting ATPase C chain
1357	 73.14	0	1868760..1871492	+	910	162449626	kdpD	sce1355	-	sensor for high-affinity potassium transport system
1358	 71.91	0	1871509..1872213	+	234	162449627	kdpE	sce1356	-	two component system transcriptional regulatory protein
1359	 65.77	-1	1872289..1872399	+	36	162449628	-	sce1357	-	hypothetical protein
1360	 73.17	0	1872714..1873574	-	286	162449629	-	sce1358	-	hypothetical protein
1361	 76.49	+1	1874341..1875582	+	413	162449630	-	sce1359	-	hypothetical protein
1362	 74.63	0	1875783..1876787	+	334	162449631	-	sce1360	-	hypothetical protein
1363	 74.12	0	1876853..1878073	+	406	162449632	-	sce1361	-	hypothetical protein
1364	 60.92	-2	1880528..1881241	+	237	162449633	-	sce1362	-	putative secreted protein
1365	 67.51	0	1881620..1882690	+	356	162449634	-	sce1363	-	hypothetical protein
1366	 75.74	+1	1882811..1884022	+	403	162449635	dinP	sce1364	-	DNA polymerase IV
1367	 70.73	0	1884052..1885305	+	417	162449636	-	sce1365	-	hypothetical protein
1368	 72.65	0	1885351..1886553	+	400	162449637	-	sce1366	-	major facilitator superfamily permease
1369	 67.52	0	1886564..1887034	+	156	162449638	-	sce1367	-	hypothetical protein
1370	 70.99	0	1887387..1888589	+	400	162449639	-	sce1368	-	PE-PGRS family protein
1371	 73.18	0	1889148..1890437	+	429	162449640	-	sce1369	-	PE-PGRS family protein
1372	 65.75	-1	1890682..1891227	+	181	162449641	-	sce1370	-	dihydrofolate reductase family protein
1373	 73.99	0	1891503..1892636	+	377	162449642	-	sce1371	-	PE-PGRS family protein
1374	 74.88	0	1892914..1893777	+	287	162449643	-	sce1372	-	hypothetical protein
1375	 76.73	+1	1893755..1894201	+	148	162449644	-	sce1373	-	hypothetical protein
1376	 70.02	0	1894231..1895154	-	307	162449645	yedI	sce1374	-	hypothetical protein
1377	 70.50	0	1895345..1896256	-	303	162449646	-	sce1375	-	GTPase
1378	 75.11	0	1896287..1896997	-	236	162449647	dsbA	sce1376	-	DSBA oxidoreductase
1379	 71.39	0	1897616..1898842	+	408	162449648	-	sce1377	-	hypothetical protein
1380	 70.69	0	1899044..1899763	-	239	162449649	-	sce1378	-	acetyltransferase
1381	 75.68	+1	1899828..1901525	-	565	162449650	-	sce1379	-	hypothetical protein
1382	 74.42	0	1901663..1903312	-	549	162449651	-	sce1380	-	protein kinase
1383	 75.71	+1	1903586..1904359	-	257	162449652	-	sce1381	-	putative nuclease
1384	 72.41	0	1904475..1904909	+	144	162449653	rimI1	sce1382	-	hypothetical protein
1385	 68.58	0	1905179..1907011	+	610	162449654	-	sce1383	-	two-component sensor histidine kinase
1386	 71.05	0	1907195..1908313	+	372	162449655	-	sce1384	-	putative secreted protein
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.