IslandPathversion 1.0

IslandPath Analysis: Silicibacter sp. TM1040



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.41 STD DEV: 3.16
Silicibacter sp. TM1040, complete genome - 1..3200938
3030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
903	 59.04	0	963640..965382	+	580	99080744	-	TM1040_0903	-	arginyl-tRNA synthetase
904	 66.35	+1	965892..966827	+	311	99080745	-	TM1040_0904	-	sporulation related
905	 63.94	+1	966827..967888	+	353	99080746	-	TM1040_0905	-	Beta-N-acetylhexosaminidase
906	 60.53	0	967881..968678	+	265	99080747	-	TM1040_0906	-	condensin subunit ScpA
907	 64.76	+1	968678..969358	+	226	99080748	-	TM1040_0907	-	condensin subunit ScpB
908	 68.22	+2	969526..969846	+	106	99080749	-	TM1040_0908	-	hypothetical protein
909	 66.92	+2	969800..970999	-	399	99080750	-	TM1040_0909	-	major facilitator transporter
910	 58.15	0	971071..971610	+	179	99080751	-	TM1040_0910	-	AsnC family transcriptional regulator
911	 63.33	0	971618..972697	-	359	99080752	-	TM1040_0911	-	2'-deoxycytidine 5'-triphosphate deaminase
912	 65.99	+1	973041..975563	-	840	99080753	-	TM1040_0912	-	MerR family transcriptional regulator
913	 55.78	-1	975623..975925	-	100	99080754	-	TM1040_0913	-	integration host factor, alpha subunit
914	 61.52	0	976013..976984	-	323	99080755	-	TM1040_0914	-	3-oxoacyl-[acyl-carrier-protein] synthase III
915	 61.70	0	977000..978127	-	375	99080756	-	TM1040_0915	-	putative glycerol-3-phosphate acyltransferase PlsX
916	 60.39	0	978169..978375	-	68	99080757	rpmF	TM1040_0916	-	50S ribosomal protein L32
917	 63.21	0	978666..979214	-	182	99080758	-	TM1040_0917	-	hypothetical protein
918	 60.04	0	979301..979768	+	155	99080759	-	TM1040_0918	-	SmpA/OmlA family lipoprotein
919	 63.58	+1	979926..980702	+	258	99080760	-	TM1040_0919	-	ornithine-acyl[acyl carrier protein] N-acyltransferase
920	 61.75	0	980789..982579	+	596	99080761	-	TM1040_0920	-	ABC transporter related
921	 63.36	0	982763..983518	-	251	99080762	-	TM1040_0921	-	short-chain dehydrogenase/reductase SDR
922	 60.82	0	983670..984593	-	307	99080763	-	TM1040_0922	-	hypothetical protein
923	 59.73	0	984889..986142	-	417	99080764	-	TM1040_0923	-	tyrosyl-tRNA synthetase
924	 65.07	+1	986286..987413	+	375	99080765	anmK	TM1040_0924	-	anhydro-N-acetylmuramic acid kinase
925	 64.33	+1	987585..988055	-	156	99080766	-	TM1040_0925	-	hypothetical protein
926	 64.06	+1	988123..989541	+	472	99080767	-	TM1040_0926	-	hypothetical protein
927	 64.42	+1	989796..991133	-	445	99080768	-	TM1040_0927	-	DEAD/DEAH box helicase-like
928	 58.75	0	991564..991980	+	138	99080769	-	TM1040_0928	-	FUR family manganese uptake regulator
929	 62.75	0	992140..993033	+	297	99080770	-	TM1040_0929	-	hypothetical protein
930	 61.74	0	993036..994274	-	412	99080771	-	TM1040_0930	-	major facilitator transporter
931	 60.88	0	994521..995798	+	425	99080772	-	TM1040_0931	-	enolase
932	 61.44	0	995924..996535	+	203	99080773	-	TM1040_0932	-	GCN5-related N-acetyltransferase
933	 64.44	+1	996615..997064	-	149	99080774	-	TM1040_0933	-	GCN5-related N-acetyltransferase
934	 61.57	0	997061..998002	-	313	99080775	-	TM1040_0934	-	inosine/uridine-preferring nucleoside hydrolase
935	 61.53	0	998101..999015	+	304	99080776	-	TM1040_0935	-	hypothetical protein
936	 60.74	0	999002..999844	-	280	99080777	mazG	TM1040_0936	-	nucleoside triphosphate pyrophosphohydrolase
937	 60.31	0	999907..1001070	+	387	99080778	-	TM1040_0937	-	peptidase M20D, amidohydrolase
938	 61.32	0	1001097..1002125	+	342	99080779	-	TM1040_0938	-	agmatinase
939	 60.76	0	1002122..1003069	+	315	99080780	-	TM1040_0939	-	agmatinase
940	 63.33	0	1003342..1003671	-	109	99080781	-	TM1040_0940	-	hypothetical protein
941	 62.87	0	1003744..1004796	+	350	99080782	-	TM1040_0941	-	peptide chain release factor 1
942	 63.80	+1	1004793..1005629	+	278	99080783	-	TM1040_0942	-	HemK family modification methylase
943	 62.03	0	1005791..1006501	+	236	99080784	-	TM1040_0943	-	hypothetical protein
944	 65.60	+1	1006604..1007446	-	280	99080785	ksgA	TM1040_0944	-	dimethyladenosine transferase
945	 64.32	+1	1007596..1008576	-	326	99080786	pdxA	TM1040_0945	-	4-hydroxythreonine-4-phosphate dehydrogenase
946	 62.90	0	1008573..1009847	-	424	99080787	-	TM1040_0946	-	PpiC-type peptidyl-prolyl cis-trans isomerase
947	 60.97	0	1009832..1012027	-	731	99080788	-	TM1040_0947	-	organic solvent tolerance protein
948	 61.25	0	1012011..1013117	-	368	99080789	-	TM1040_0948	-	permease YjgP/YjgQ
949	 60.09	0	1013114..1014253	-	379	99080790	-	TM1040_0949	-	permease YjgP/YjgQ
950	 61.31	0	1014475..1015950	+	491	99080791	-	TM1040_0950	-	leucyl aminopeptidase
951	 63.66	+1	1015957..1016421	+	154	99080792	-	TM1040_0951	-	DNA polymerase III subunit chi
952	 57.56	0	1016672..1017253	-	193	99080793	-	TM1040_0952	-	hypothetical protein
953	 58.49	0	1017303..1017926	-	207	99080794	-	TM1040_0953	-	multiple antibiotic resistance (MarC)-related proteins
954	 61.30	0	1017923..1019824	-	633	99080795	-	TM1040_0954	-	ABC transporter related
955	 63.97	+1	1020018..1021610	+	530	99080796	-	TM1040_0955	-	hypothetical protein
956	 63.52	0	1021740..1022948	+	402	99080797	-	TM1040_0956	-	Bcr/CflA subfamily drug resistance transporter
957	 58.87	0	1023097..1023519	+	140	99080798	-	TM1040_0957	-	nucleoside diphosphate kinase
958	 60.42	0	1023637..1023972	-	111	99080799	-	TM1040_0958	-	TfoX domain-containing protein
959	 62.66	0	1024317..1025639	+	440	99080800	-	TM1040_0959	-	mannose-6-phosphate isomerase, type II
960	 58.60	0	1026394..1027038	-	214	99080801	-	TM1040_0960	-	two component LuxR family transcriptional regulator
961	 57.05	-1	1027361..1027828	+	155	99080802	-	TM1040_0961	-	oxidoreductase, molybdopterin binding
962	 59.55	0	1027874..1030345	+	823	99080803	-	TM1040_0962	-	PAS/PAC sensor hybrid histidine kinase
963	 56.53	-1	1030665..1031591	+	308	99080804	-	TM1040_0963	-	anti-sigma-factor antagonist
964	 63.50	0	1031901..1032911	+	336	99080805	-	TM1040_0964	-	tRNA-dihydrouridine synthase A
965	 62.66	0	1032917..1033714	+	265	99080806	-	TM1040_0965	-	hypothetical protein
966	 62.87	0	1033845..1034081	-	78	99080807	-	TM1040_0966	-	hypothetical protein
967	 60.13	0	1034085..1034558	-	157	99080808	-	TM1040_0967	-	Holliday junction resolvase YqgF
968	 64.16	+1	1034555..1035793	-	412	99080809	-	TM1040_0968	-	cytochrome c-type biogenesis protein CycH
969	 60.80	0	1035985..1037280	+	431	99080810	-	TM1040_0969	-	sarcosine oxidase beta subunit family protein
970	 62.76	0	1037333..1037665	+	110	99080811	-	TM1040_0970	-	sarcosine oxidase, delta subunit, heterotetrameric
971	 61.96	0	1037740..1040775	+	1011	99080812	-	TM1040_0971	-	sarcosine oxidase alpha subunit family protein
972	 62.28	0	1040768..1041337	+	189	99080813	-	TM1040_0972	-	sarcosine oxidase, gamma subunit
973	 51.58	-2	1041451..1041861	+	136	99080814	-	TM1040_0973	-	hypothetical protein
974	 52.82	-2	1042009..1042398	+	129	99080815	-	TM1040_0974	-	hypothetical protein
975	 53.46	-2	1042474..1042935	+	153	99080816	-	TM1040_0975	-	hypothetical protein
976	 57.33	0	1043026..1043625	+	199	99080817	-	TM1040_0976	-	superoxide dismutase
977	 58.21	0	1043784..1044398	+	204	99080818	-	TM1040_0977	-	GCN5-related N-acetyltransferase
978	 63.17	0	1044530..1045072	-	180	99080819	-	TM1040_0978	-	hypothetical protein
979	 65.70	+1	1045222..1047177	+	651	99080820	-	TM1040_0979	-	peptidoglycan-binding LysM
980	 62.33	0	1047285..1049105	+	606	99080821	-	TM1040_0980	-	ABC transporter related
981	 60.24	0	1049409..1049657	+	82	99080822	-	TM1040_0981	-	calcium-binding EF-hand
982	 58.80	0	1050017..1050601	-	194	99080823	-	TM1040_0982	-	TetR family transcriptional regulator
983	 58.15	0	1050757..1051590	+	277	99080824	-	TM1040_0983	-	short chain dehydrogenase
984	 59.66	0	1052015..1053841	+	608	99080825	-	TM1040_0984	-	methyl-accepting chemotaxis sensory transducer
985	 57.50	0	1054046..1054285	-	79	99080826	-	TM1040_0985	-	hypothetical protein
986	 55.66	-1	1054261..1054578	-	105	99080827	-	TM1040_0986	-	hypothetical protein
987	 61.75	0	1054875..1058678	-	1267	99080828	-	TM1040_0987	-	acriflavin resistance protein
988	 64.34	+1	1058675..1059922	-	415	99080829	-	TM1040_0988	-	secretion protein HlyD
989	 64.13	+1	1060287..1060955	+	222	99080830	-	TM1040_0989	-	hypothetical protein
990	 65.08	+1	1061024..1062349	+	441	99080831	-	TM1040_0990	-	Pyrrolo-quinoline quinone
991	 61.80	0	1062663..1064141	+	492	99080832	engA	TM1040_0991	-	GTP-binding protein EngA
992	 55.03	-1	1064391..1065344	+	317	99080833	-	TM1040_0992	-	fatty acid desaturase
993	 59.85	0	1065465..1066124	+	219	99080834	-	TM1040_0993	-	helix-hairpin-helix DNA-binding, class 1
994	 63.50	0	1066244..1067536	-	430	99080835	-	TM1040_0994	-	seryl-tRNA synthetase
995	 57.54	0	1067792..1068076	+	94	99080836	-	TM1040_0995	-	protein translocase subunit yajC
996	 62.04	0	1068111..1069775	+	554	99080837	secD	TM1040_0996	-	preprotein translocase subunit SecD
997	 59.13	0	1069779..1070747	+	322	99080838	secF	TM1040_0997	-	preprotein translocase subunit SecF
998	 60.73	0	1070995..1071348	+	117	99080839	-	TM1040_0998	-	hypothetical protein
999	 65.69	+1	1071433..1072047	+	204	99080840	-	TM1040_0999	-	cytochrome c biogenesis protein CcmA
1000	 64.23	+1	1072044..1072700	+	218	99080841	-	TM1040_1000	-	heme exporter protein CcmB
1001	 59.86	0	1072745..1073479	+	244	99080842	-	TM1040_1001	-	heme exporter protein CcmC
1002	 58.33	0	1073472..1073627	+	51	99080843	-	TM1040_1002	-	Heme exporter protein D (CcmD)
60.41	MEAN

3.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.