version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 903 59.04 0 963640..965382 + 580 99080744 - TM1040_0903 - arginyl-tRNA synthetase 904 66.35 +1 965892..966827 + 311 99080745 - TM1040_0904 - sporulation related 905 63.94 +1 966827..967888 + 353 99080746 - TM1040_0905 - Beta-N-acetylhexosaminidase 906 60.53 0 967881..968678 + 265 99080747 - TM1040_0906 - condensin subunit ScpA 907 64.76 +1 968678..969358 + 226 99080748 - TM1040_0907 - condensin subunit ScpB 908 68.22 +2 969526..969846 + 106 99080749 - TM1040_0908 - hypothetical protein 909 66.92 +2 969800..970999 - 399 99080750 - TM1040_0909 - major facilitator transporter 910 58.15 0 971071..971610 + 179 99080751 - TM1040_0910 - AsnC family transcriptional regulator 911 63.33 0 971618..972697 - 359 99080752 - TM1040_0911 - 2'-deoxycytidine 5'-triphosphate deaminase 912 65.99 +1 973041..975563 - 840 99080753 - TM1040_0912 - MerR family transcriptional regulator 913 55.78 -1 975623..975925 - 100 99080754 - TM1040_0913 - integration host factor, alpha subunit 914 61.52 0 976013..976984 - 323 99080755 - TM1040_0914 - 3-oxoacyl-[acyl-carrier-protein] synthase III 915 61.70 0 977000..978127 - 375 99080756 - TM1040_0915 - putative glycerol-3-phosphate acyltransferase PlsX 916 60.39 0 978169..978375 - 68 99080757 rpmF TM1040_0916 - 50S ribosomal protein L32 917 63.21 0 978666..979214 - 182 99080758 - TM1040_0917 - hypothetical protein 918 60.04 0 979301..979768 + 155 99080759 - TM1040_0918 - SmpA/OmlA family lipoprotein 919 63.58 +1 979926..980702 + 258 99080760 - TM1040_0919 - ornithine-acyl[acyl carrier protein] N-acyltransferase 920 61.75 0 980789..982579 + 596 99080761 - TM1040_0920 - ABC transporter related 921 63.36 0 982763..983518 - 251 99080762 - TM1040_0921 - short-chain dehydrogenase/reductase SDR 922 60.82 0 983670..984593 - 307 99080763 - TM1040_0922 - hypothetical protein 923 59.73 0 984889..986142 - 417 99080764 - TM1040_0923 - tyrosyl-tRNA synthetase 924 65.07 +1 986286..987413 + 375 99080765 anmK TM1040_0924 - anhydro-N-acetylmuramic acid kinase 925 64.33 +1 987585..988055 - 156 99080766 - TM1040_0925 - hypothetical protein 926 64.06 +1 988123..989541 + 472 99080767 - TM1040_0926 - hypothetical protein 927 64.42 +1 989796..991133 - 445 99080768 - TM1040_0927 - DEAD/DEAH box helicase-like 928 58.75 0 991564..991980 + 138 99080769 - TM1040_0928 - FUR family manganese uptake regulator 929 62.75 0 992140..993033 + 297 99080770 - TM1040_0929 - hypothetical protein 930 61.74 0 993036..994274 - 412 99080771 - TM1040_0930 - major facilitator transporter 931 60.88 0 994521..995798 + 425 99080772 - TM1040_0931 - enolase 932 61.44 0 995924..996535 + 203 99080773 - TM1040_0932 - GCN5-related N-acetyltransferase 933 64.44 +1 996615..997064 - 149 99080774 - TM1040_0933 - GCN5-related N-acetyltransferase 934 61.57 0 997061..998002 - 313 99080775 - TM1040_0934 - inosine/uridine-preferring nucleoside hydrolase 935 61.53 0 998101..999015 + 304 99080776 - TM1040_0935 - hypothetical protein 936 60.74 0 999002..999844 - 280 99080777 mazG TM1040_0936 - nucleoside triphosphate pyrophosphohydrolase 937 60.31 0 999907..1001070 + 387 99080778 - TM1040_0937 - peptidase M20D, amidohydrolase 938 61.32 0 1001097..1002125 + 342 99080779 - TM1040_0938 - agmatinase 939 60.76 0 1002122..1003069 + 315 99080780 - TM1040_0939 - agmatinase 940 63.33 0 1003342..1003671 - 109 99080781 - TM1040_0940 - hypothetical protein 941 62.87 0 1003744..1004796 + 350 99080782 - TM1040_0941 - peptide chain release factor 1 942 63.80 +1 1004793..1005629 + 278 99080783 - TM1040_0942 - HemK family modification methylase 943 62.03 0 1005791..1006501 + 236 99080784 - TM1040_0943 - hypothetical protein 944 65.60 +1 1006604..1007446 - 280 99080785 ksgA TM1040_0944 - dimethyladenosine transferase 945 64.32 +1 1007596..1008576 - 326 99080786 pdxA TM1040_0945 - 4-hydroxythreonine-4-phosphate dehydrogenase 946 62.90 0 1008573..1009847 - 424 99080787 - TM1040_0946 - PpiC-type peptidyl-prolyl cis-trans isomerase 947 60.97 0 1009832..1012027 - 731 99080788 - TM1040_0947 - organic solvent tolerance protein 948 61.25 0 1012011..1013117 - 368 99080789 - TM1040_0948 - permease YjgP/YjgQ 949 60.09 0 1013114..1014253 - 379 99080790 - TM1040_0949 - permease YjgP/YjgQ 950 61.31 0 1014475..1015950 + 491 99080791 - TM1040_0950 - leucyl aminopeptidase 951 63.66 +1 1015957..1016421 + 154 99080792 - TM1040_0951 - DNA polymerase III subunit chi 952 57.56 0 1016672..1017253 - 193 99080793 - TM1040_0952 - hypothetical protein 953 58.49 0 1017303..1017926 - 207 99080794 - TM1040_0953 - multiple antibiotic resistance (MarC)-related proteins 954 61.30 0 1017923..1019824 - 633 99080795 - TM1040_0954 - ABC transporter related 955 63.97 +1 1020018..1021610 + 530 99080796 - TM1040_0955 - hypothetical protein 956 63.52 0 1021740..1022948 + 402 99080797 - TM1040_0956 - Bcr/CflA subfamily drug resistance transporter 957 58.87 0 1023097..1023519 + 140 99080798 - TM1040_0957 - nucleoside diphosphate kinase 958 60.42 0 1023637..1023972 - 111 99080799 - TM1040_0958 - TfoX domain-containing protein 959 62.66 0 1024317..1025639 + 440 99080800 - TM1040_0959 - mannose-6-phosphate isomerase, type II 960 58.60 0 1026394..1027038 - 214 99080801 - TM1040_0960 - two component LuxR family transcriptional regulator 961 57.05 -1 1027361..1027828 + 155 99080802 - TM1040_0961 - oxidoreductase, molybdopterin binding 962 59.55 0 1027874..1030345 + 823 99080803 - TM1040_0962 - PAS/PAC sensor hybrid histidine kinase 963 56.53 -1 1030665..1031591 + 308 99080804 - TM1040_0963 - anti-sigma-factor antagonist 964 63.50 0 1031901..1032911 + 336 99080805 - TM1040_0964 - tRNA-dihydrouridine synthase A 965 62.66 0 1032917..1033714 + 265 99080806 - TM1040_0965 - hypothetical protein 966 62.87 0 1033845..1034081 - 78 99080807 - TM1040_0966 - hypothetical protein 967 60.13 0 1034085..1034558 - 157 99080808 - TM1040_0967 - Holliday junction resolvase YqgF 968 64.16 +1 1034555..1035793 - 412 99080809 - TM1040_0968 - cytochrome c-type biogenesis protein CycH 969 60.80 0 1035985..1037280 + 431 99080810 - TM1040_0969 - sarcosine oxidase beta subunit family protein 970 62.76 0 1037333..1037665 + 110 99080811 - TM1040_0970 - sarcosine oxidase, delta subunit, heterotetrameric 971 61.96 0 1037740..1040775 + 1011 99080812 - TM1040_0971 - sarcosine oxidase alpha subunit family protein 972 62.28 0 1040768..1041337 + 189 99080813 - TM1040_0972 - sarcosine oxidase, gamma subunit 973 51.58 -2 1041451..1041861 + 136 99080814 - TM1040_0973 - hypothetical protein 974 52.82 -2 1042009..1042398 + 129 99080815 - TM1040_0974 - hypothetical protein 975 53.46 -2 1042474..1042935 + 153 99080816 - TM1040_0975 - hypothetical protein 976 57.33 0 1043026..1043625 + 199 99080817 - TM1040_0976 - superoxide dismutase 977 58.21 0 1043784..1044398 + 204 99080818 - TM1040_0977 - GCN5-related N-acetyltransferase 978 63.17 0 1044530..1045072 - 180 99080819 - TM1040_0978 - hypothetical protein 979 65.70 +1 1045222..1047177 + 651 99080820 - TM1040_0979 - peptidoglycan-binding LysM 980 62.33 0 1047285..1049105 + 606 99080821 - TM1040_0980 - ABC transporter related 981 60.24 0 1049409..1049657 + 82 99080822 - TM1040_0981 - calcium-binding EF-hand 982 58.80 0 1050017..1050601 - 194 99080823 - TM1040_0982 - TetR family transcriptional regulator 983 58.15 0 1050757..1051590 + 277 99080824 - TM1040_0983 - short chain dehydrogenase 984 59.66 0 1052015..1053841 + 608 99080825 - TM1040_0984 - methyl-accepting chemotaxis sensory transducer 985 57.50 0 1054046..1054285 - 79 99080826 - TM1040_0985 - hypothetical protein 986 55.66 -1 1054261..1054578 - 105 99080827 - TM1040_0986 - hypothetical protein 987 61.75 0 1054875..1058678 - 1267 99080828 - TM1040_0987 - acriflavin resistance protein 988 64.34 +1 1058675..1059922 - 415 99080829 - TM1040_0988 - secretion protein HlyD 989 64.13 +1 1060287..1060955 + 222 99080830 - TM1040_0989 - hypothetical protein 990 65.08 +1 1061024..1062349 + 441 99080831 - TM1040_0990 - Pyrrolo-quinoline quinone 991 61.80 0 1062663..1064141 + 492 99080832 engA TM1040_0991 - GTP-binding protein EngA 992 55.03 -1 1064391..1065344 + 317 99080833 - TM1040_0992 - fatty acid desaturase 993 59.85 0 1065465..1066124 + 219 99080834 - TM1040_0993 - helix-hairpin-helix DNA-binding, class 1 994 63.50 0 1066244..1067536 - 430 99080835 - TM1040_0994 - seryl-tRNA synthetase 995 57.54 0 1067792..1068076 + 94 99080836 - TM1040_0995 - protein translocase subunit yajC 996 62.04 0 1068111..1069775 + 554 99080837 secD TM1040_0996 - preprotein translocase subunit SecD 997 59.13 0 1069779..1070747 + 322 99080838 secF TM1040_0997 - preprotein translocase subunit SecF 998 60.73 0 1070995..1071348 + 117 99080839 - TM1040_0998 - hypothetical protein 999 65.69 +1 1071433..1072047 + 204 99080840 - TM1040_0999 - cytochrome c biogenesis protein CcmA 1000 64.23 +1 1072044..1072700 + 218 99080841 - TM1040_1000 - heme exporter protein CcmB 1001 59.86 0 1072745..1073479 + 244 99080842 - TM1040_1001 - heme exporter protein CcmC 1002 58.33 0 1073472..1073627 + 51 99080843 - TM1040_1002 - Heme exporter protein D (CcmD) 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.