version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 839 60.09 0 884254..887037 + 927 99080680 - TM1040_0839 - methyl-accepting chemotaxis sensory transducer 840 49.38 -2 887215..887457 - 80 99080681 - TM1040_0840 - hypothetical protein 841 56.75 -1 887959..888321 + 120 99080682 - TM1040_0841 - hypothetical protein 842 62.31 0 888359..889966 + 535 99080683 - TM1040_0842 - peptidase C1A, papain 843 59.79 0 889986..894845 + 1619 99080684 - TM1040_0843 - OmpA/MotB 844 62.95 0 894888..895775 - 295 99080685 - TM1040_0844 - LysR family transcriptional regulator 845 64.25 +1 895892..897502 + 536 99080686 - TM1040_0845 - glucose-methanol-choline oxidoreductase 846 63.01 0 897499..898674 + 391 99080687 - TM1040_0846 - mandelate racemase/muconate lactonizing-like protein 847 63.97 +1 898671..900155 + 494 99080688 - TM1040_0847 - betaine-aldehyde dehydrogenase 848 60.40 0 900379..901287 - 302 99080689 - TM1040_0848 - LysR family transcriptional regulator 849 60.92 0 901433..902737 + 434 99080690 - TM1040_0849 - extracellular solute-binding protein 850 57.60 0 902829..903710 + 293 99080691 - TM1040_0850 - binding-protein-dependent transport systems inner membrane component 851 56.34 -1 903710..904561 + 283 99080692 - TM1040_0851 - binding-protein-dependent transport systems inner membrane component 852 60.04 0 904570..905625 + 351 99080693 - TM1040_0852 - glycerol-3-phosphate transporter ATP-binding subunit 853 64.24 +1 905622..906569 + 315 99080694 - TM1040_0853 - glycerophosphoryl diester phosphodiesterase 854 62.32 0 906573..907493 + 306 99080695 - TM1040_0854 - haloacid dehalogenase-like hydrolase 855 61.99 0 907552..909198 + 548 99080696 - TM1040_0855 - Na+/Pi-cotransporter 856 63.37 0 909271..909846 + 191 99080697 - TM1040_0856 - phosphoglycerate mutase 857 53.64 -2 910004..910333 - 109 99080698 - TM1040_0857 - hypothetical protein 858 62.53 0 910897..911307 + 136 99080699 - TM1040_0858 - thioesterase superfamily protein 859 61.14 0 911391..912782 - 463 99080700 - TM1040_0859 - hypothetical protein 860 59.59 0 913262..914491 + 409 161899030 - TM1040_0860 - 5-aminolevulinate synthase 861 62.32 0 914620..915837 + 405 99080702 - TM1040_0861 - hypothetical protein 862 60.05 0 915958..917091 + 377 99080703 ispG TM1040_0862 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 863 60.78 0 917168..917932 - 254 99080704 - TM1040_0863 - DSBA oxidoreductase 864 64.06 +1 917929..919350 - 473 99080705 - TM1040_0864 - peptidase M48, Ste24p 865 63.26 0 919373..920518 + 381 99080706 - TM1040_0865 - aminotransferase 866 63.92 +1 920518..921756 + 412 99080707 - TM1040_0866 - N-acetylmuramoyl-L-alanine amidase 867 61.16 0 922143..924650 + 835 99080708 - TM1040_0867 - penicillin-binding protein 1A 868 61.16 0 924764..925888 + 374 99080709 - TM1040_0868 - peptide chain release factor 2 869 62.86 0 926009..927346 - 445 99080710 - TM1040_0869 - major facilitator transporter 870 65.36 +1 927480..928859 + 459 99080711 - TM1040_0870 - amidase 871 59.26 0 928914..929723 + 269 99080712 - TM1040_0871 - hypothetical protein 872 58.68 0 929716..930516 - 266 99080713 - TM1040_0872 - XRE family transcriptional regulator 873 59.52 0 930711..931130 + 139 99080714 - TM1040_0873 - hypothetical protein 874 59.71 0 931317..931877 - 186 99080715 ilvH TM1040_0874 - acetolactate synthase 3 regulatory subunit 875 60.56 0 931943..933694 - 583 99080716 - TM1040_0875 - acetolactate synthase 3 catalytic subunit 876 60.97 0 934294..934995 - 233 99080717 - TM1040_0876 - two component LuxR family transcriptional regulator 877 62.04 0 935016..936440 - 474 99080718 - TM1040_0877 - periplasmic sensor signal transduction histidine kinase 878 62.62 0 936737..937822 + 361 99080719 - TM1040_0878 - twin-arginine translocation pathway signal 879 56.54 -1 937960..938907 + 315 99080720 - TM1040_0879 - TRAP-type mannitol/chloroaromatic compound transport system small permease component-like 880 60.76 0 938924..941278 + 784 99080721 - TM1040_0880 - TRAP C4-dicarboxylate transport system permease DctM subunit 881 64.84 +1 941492..941875 - 127 99080722 - TM1040_0881 - glyoxalase/bleomycin resistance protein/dioxygenase 882 61.21 0 941881..942705 - 274 99080723 - TM1040_0882 - arginyl-tRNA-protein transferase 883 62.27 0 942879..943310 - 143 99080724 - TM1040_0883 - RDD domain-containing protein 884 60.53 0 943379..943834 - 151 99080725 - TM1040_0884 - hypothetical protein 885 64.11 +1 944459..947317 + 952 99080726 - TM1040_0885 - glutamate-ammonia-ligase adenylyltransferase 886 67.97 +2 947364..947594 + 76 99080727 - TM1040_0886 - hypothetical protein 887 65.02 +1 948037..949254 + 405 99080728 - TM1040_0887 - SAM-dependent methyltransferase 888 65.74 +1 949266..949805 + 179 99080729 - TM1040_0888 - hypothetical protein 889 64.84 +1 949911..950897 - 328 99080730 - TM1040_0889 - luciferase-like 890 62.01 0 950986..951672 - 228 99080731 - TM1040_0890 - peptidase M48, Ste24p 891 60.68 0 952013..953197 - 394 99080732 - TM1040_0891 - hypothetical protein 892 56.55 -1 953229..953396 - 55 99080733 - TM1040_0892 - hypothetical protein 893 68.12 +2 953503..954951 - 482 99080734 - TM1040_0893 - hypothetical protein 894 56.07 -1 955075..955914 - 279 99080735 - TM1040_0894 - ATPase 895 58.28 0 956048..956524 + 158 99080736 - TM1040_0895 - TraR/DksA family transcriptional regulator 896 63.76 +1 956617..957786 + 389 99080737 - TM1040_0896 - monooxygenase, FAD-binding 897 61.96 0 958089..958895 - 268 99080738 - TM1040_0897 - exodeoxyribonuclease III 898 46.80 -2 959238..959534 - 98 99080739 - TM1040_0898 - hypothetical protein 899 56.43 -1 959653..960717 + 354 99080740 - TM1040_0899 - hypothetical protein 900 61.18 0 960714..961715 + 333 99080741 - TM1040_0900 - hypothetical protein 901 59.26 0 961909..962232 - 107 99080742 - TM1040_0901 - HesB/YadR/YfhF 902 62.03 0 962323..963465 + 380 99080743 - TM1040_0902 - deoxyguanosinetriphosphate triphosphohydrolase 903 59.04 0 963640..965382 + 580 99080744 - TM1040_0903 - arginyl-tRNA synthetase 904 66.35 +1 965892..966827 + 311 99080745 - TM1040_0904 - sporulation related 905 63.94 +1 966827..967888 + 353 99080746 - TM1040_0905 - Beta-N-acetylhexosaminidase 906 60.53 0 967881..968678 + 265 99080747 - TM1040_0906 - condensin subunit ScpA 907 64.76 +1 968678..969358 + 226 99080748 - TM1040_0907 - condensin subunit ScpB 908 68.22 +2 969526..969846 + 106 99080749 - TM1040_0908 - hypothetical protein 909 66.92 +2 969800..970999 - 399 99080750 - TM1040_0909 - major facilitator transporter 910 58.15 0 971071..971610 + 179 99080751 - TM1040_0910 - AsnC family transcriptional regulator 911 63.33 0 971618..972697 - 359 99080752 - TM1040_0911 - 2'-deoxycytidine 5'-triphosphate deaminase 912 65.99 +1 973041..975563 - 840 99080753 - TM1040_0912 - MerR family transcriptional regulator 913 55.78 -1 975623..975925 - 100 99080754 - TM1040_0913 - integration host factor, alpha subunit 914 61.52 0 976013..976984 - 323 99080755 - TM1040_0914 - 3-oxoacyl-[acyl-carrier-protein] synthase III 915 61.70 0 977000..978127 - 375 99080756 - TM1040_0915 - putative glycerol-3-phosphate acyltransferase PlsX 916 60.39 0 978169..978375 - 68 99080757 rpmF TM1040_0916 - 50S ribosomal protein L32 917 63.21 0 978666..979214 - 182 99080758 - TM1040_0917 - hypothetical protein 918 60.04 0 979301..979768 + 155 99080759 - TM1040_0918 - SmpA/OmlA family lipoprotein 919 63.58 +1 979926..980702 + 258 99080760 - TM1040_0919 - ornithine-acyl[acyl carrier protein] N-acyltransferase 920 61.75 0 980789..982579 + 596 99080761 - TM1040_0920 - ABC transporter related 921 63.36 0 982763..983518 - 251 99080762 - TM1040_0921 - short-chain dehydrogenase/reductase SDR 922 60.82 0 983670..984593 - 307 99080763 - TM1040_0922 - hypothetical protein 923 59.73 0 984889..986142 - 417 99080764 - TM1040_0923 - tyrosyl-tRNA synthetase 924 65.07 +1 986286..987413 + 375 99080765 anmK TM1040_0924 - anhydro-N-acetylmuramic acid kinase 925 64.33 +1 987585..988055 - 156 99080766 - TM1040_0925 - hypothetical protein 926 64.06 +1 988123..989541 + 472 99080767 - TM1040_0926 - hypothetical protein 927 64.42 +1 989796..991133 - 445 99080768 - TM1040_0927 - DEAD/DEAH box helicase-like 928 58.75 0 991564..991980 + 138 99080769 - TM1040_0928 - FUR family manganese uptake regulator 929 62.75 0 992140..993033 + 297 99080770 - TM1040_0929 - hypothetical protein 930 61.74 0 993036..994274 - 412 99080771 - TM1040_0930 - major facilitator transporter 931 60.88 0 994521..995798 + 425 99080772 - TM1040_0931 - enolase 932 61.44 0 995924..996535 + 203 99080773 - TM1040_0932 - GCN5-related N-acetyltransferase 933 64.44 +1 996615..997064 - 149 99080774 - TM1040_0933 - GCN5-related N-acetyltransferase 934 61.57 0 997061..998002 - 313 99080775 - TM1040_0934 - inosine/uridine-preferring nucleoside hydrolase 935 61.53 0 998101..999015 + 304 99080776 - TM1040_0935 - hypothetical protein 936 60.74 0 999002..999844 - 280 99080777 mazG TM1040_0936 - nucleoside triphosphate pyrophosphohydrolase 937 60.31 0 999907..1001070 + 387 99080778 - TM1040_0937 - peptidase M20D, amidohydrolase 938 61.32 0 1001097..1002125 + 342 99080779 - TM1040_0938 - agmatinase 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.