IslandPath Analysis: Silicibacter sp. TM1040



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.41   STD DEV: 3.16
Silicibacter sp. TM1040, complete genome - 1..3200938
3030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
816	 54.46	-1	858386..858688	-	100	99080657	-	TM1040_0816	-	hypothetical protein
817	 50.46	-2	858798..859124	-	108	99080658	-	TM1040_0817	-	hypothetical protein
818	 54.50	-1	859121..859564	-	147	99080659	-	TM1040_0818	-	hypothetical protein
819	 60.88	0	859581..863936	+	1451	99080660	-	TM1040_0819	-	tape measure domain-containing protein
820	 56.83	-1	863936..864880	+	314	99080661	-	TM1040_0820	-	hypothetical protein
821	 52.70	-2	864877..866394	+	505	99080662	-	TM1040_0821	-	hypothetical protein
822	 59.34	0	866391..866936	+	181	99080663	-	TM1040_0822	-	hypothetical protein
823	 62.99	0	866908..867261	+	117	99080664	-	TM1040_0823	-	hypothetical protein
824	 57.91	0	867268..867564	+	98	99080665	-	TM1040_0824	-	hypothetical protein
825	 62.30	0	867561..867995	+	144	99080666	-	TM1040_0825	-	hypothetical protein
826	 60.99	0	867997..868806	+	269	99080667	-	TM1040_0826	-	hypothetical protein
827	 58.90	0	868803..869201	+	132	99080668	-	TM1040_0827	-	hypothetical protein
828	 52.03	-2	869373..869987	-	204	99080669	-	TM1040_0828	-	two component LuxR family transcriptional regulator
829	 50.23	-2	870157..870582	-	141	99080670	-	TM1040_0829	-	response regulator receiver protein
830	 51.90	-2	870579..871763	-	394	99080671	-	TM1040_0830	-	PAS/PAC sensor signal transduction histidine kinase
831	 58.77	0	872933..873844	-	303	99080672	-	TM1040_0831	-	LysR family transcriptional regulator
832	 63.77	+1	873956..875506	+	516	99080673	-	TM1040_0832	-	NADH/ubiquinone/plastoquinone (complex I)
833	 64.35	+1	875521..877938	+	805	99080674	-	TM1040_0833	-	hypothetical protein
834	 61.93	0	878016..879683	-	555	99080675	-	TM1040_0834	-	amidohydrolase 3
835	 56.24	-1	879761..880786	-	341	99080676	-	TM1040_0835	-	extracellular solute-binding protein
836	 57.05	-1	880854..881654	-	266	99080677	-	TM1040_0836	-	binding-protein-dependent transport systems inner membrane component
837	 60.13	0	881647..882579	-	310	99080678	-	TM1040_0837	-	binding-protein-dependent transport systems inner membrane component
838	 57.32	0	882584..883696	-	370	99080679	-	TM1040_0838	-	spermidine/putrescine ABC transporter ATP-binding subunit
839	 60.09	0	884254..887037	+	927	99080680	-	TM1040_0839	-	methyl-accepting chemotaxis sensory transducer
840	 49.38	-2	887215..887457	-	80	99080681	-	TM1040_0840	-	hypothetical protein
841	 56.75	-1	887959..888321	+	120	99080682	-	TM1040_0841	-	hypothetical protein
842	 62.31	0	888359..889966	+	535	99080683	-	TM1040_0842	-	peptidase C1A, papain
843	 59.79	0	889986..894845	+	1619	99080684	-	TM1040_0843	-	OmpA/MotB
844	 62.95	0	894888..895775	-	295	99080685	-	TM1040_0844	-	LysR family transcriptional regulator
845	 64.25	+1	895892..897502	+	536	99080686	-	TM1040_0845	-	glucose-methanol-choline oxidoreductase
846	 63.01	0	897499..898674	+	391	99080687	-	TM1040_0846	-	mandelate racemase/muconate lactonizing-like protein
847	 63.97	+1	898671..900155	+	494	99080688	-	TM1040_0847	-	betaine-aldehyde dehydrogenase
848	 60.40	0	900379..901287	-	302	99080689	-	TM1040_0848	-	LysR family transcriptional regulator
849	 60.92	0	901433..902737	+	434	99080690	-	TM1040_0849	-	extracellular solute-binding protein
850	 57.60	0	902829..903710	+	293	99080691	-	TM1040_0850	-	binding-protein-dependent transport systems inner membrane component
851	 56.34	-1	903710..904561	+	283	99080692	-	TM1040_0851	-	binding-protein-dependent transport systems inner membrane component
852	 60.04	0	904570..905625	+	351	99080693	-	TM1040_0852	-	glycerol-3-phosphate transporter ATP-binding subunit
853	 64.24	+1	905622..906569	+	315	99080694	-	TM1040_0853	-	glycerophosphoryl diester phosphodiesterase
854	 62.32	0	906573..907493	+	306	99080695	-	TM1040_0854	-	haloacid dehalogenase-like hydrolase
855	 61.99	0	907552..909198	+	548	99080696	-	TM1040_0855	-	Na+/Pi-cotransporter
856	 63.37	0	909271..909846	+	191	99080697	-	TM1040_0856	-	phosphoglycerate mutase
857	 53.64	-2	910004..910333	-	109	99080698	-	TM1040_0857	-	hypothetical protein
858	 62.53	0	910897..911307	+	136	99080699	-	TM1040_0858	-	thioesterase superfamily protein
859	 61.14	0	911391..912782	-	463	99080700	-	TM1040_0859	-	hypothetical protein
860	 59.59	0	913262..914491	+	409	161899030	-	TM1040_0860	-	5-aminolevulinate synthase
861	 62.32	0	914620..915837	+	405	99080702	-	TM1040_0861	-	hypothetical protein
862	 60.05	0	915958..917091	+	377	99080703	ispG	TM1040_0862	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
863	 60.78	0	917168..917932	-	254	99080704	-	TM1040_0863	-	DSBA oxidoreductase
864	 64.06	+1	917929..919350	-	473	99080705	-	TM1040_0864	-	peptidase M48, Ste24p
865	 63.26	0	919373..920518	+	381	99080706	-	TM1040_0865	-	aminotransferase
866	 63.92	+1	920518..921756	+	412	99080707	-	TM1040_0866	-	N-acetylmuramoyl-L-alanine amidase
867	 61.16	0	922143..924650	+	835	99080708	-	TM1040_0867	-	penicillin-binding protein 1A
868	 61.16	0	924764..925888	+	374	99080709	-	TM1040_0868	-	peptide chain release factor 2
869	 62.86	0	926009..927346	-	445	99080710	-	TM1040_0869	-	major facilitator transporter
870	 65.36	+1	927480..928859	+	459	99080711	-	TM1040_0870	-	amidase
871	 59.26	0	928914..929723	+	269	99080712	-	TM1040_0871	-	hypothetical protein
872	 58.68	0	929716..930516	-	266	99080713	-	TM1040_0872	-	XRE family transcriptional regulator
873	 59.52	0	930711..931130	+	139	99080714	-	TM1040_0873	-	hypothetical protein
874	 59.71	0	931317..931877	-	186	99080715	ilvH	TM1040_0874	-	acetolactate synthase 3 regulatory subunit
875	 60.56	0	931943..933694	-	583	99080716	-	TM1040_0875	-	acetolactate synthase 3 catalytic subunit
876	 60.97	0	934294..934995	-	233	99080717	-	TM1040_0876	-	two component LuxR family transcriptional regulator
877	 62.04	0	935016..936440	-	474	99080718	-	TM1040_0877	-	periplasmic sensor signal transduction histidine kinase
878	 62.62	0	936737..937822	+	361	99080719	-	TM1040_0878	-	twin-arginine translocation pathway signal
879	 56.54	-1	937960..938907	+	315	99080720	-	TM1040_0879	-	TRAP-type mannitol/chloroaromatic compound transport system small permease component-like
880	 60.76	0	938924..941278	+	784	99080721	-	TM1040_0880	-	TRAP C4-dicarboxylate transport system permease DctM subunit
881	 64.84	+1	941492..941875	-	127	99080722	-	TM1040_0881	-	glyoxalase/bleomycin resistance protein/dioxygenase
882	 61.21	0	941881..942705	-	274	99080723	-	TM1040_0882	-	arginyl-tRNA-protein transferase
883	 62.27	0	942879..943310	-	143	99080724	-	TM1040_0883	-	RDD domain-containing protein
884	 60.53	0	943379..943834	-	151	99080725	-	TM1040_0884	-	hypothetical protein
885	 64.11	+1	944459..947317	+	952	99080726	-	TM1040_0885	-	glutamate-ammonia-ligase adenylyltransferase
886	 67.97	+2	947364..947594	+	76	99080727	-	TM1040_0886	-	hypothetical protein
887	 65.02	+1	948037..949254	+	405	99080728	-	TM1040_0887	-	SAM-dependent methyltransferase
888	 65.74	+1	949266..949805	+	179	99080729	-	TM1040_0888	-	hypothetical protein
889	 64.84	+1	949911..950897	-	328	99080730	-	TM1040_0889	-	luciferase-like
890	 62.01	0	950986..951672	-	228	99080731	-	TM1040_0890	-	peptidase M48, Ste24p
891	 60.68	0	952013..953197	-	394	99080732	-	TM1040_0891	-	hypothetical protein
892	 56.55	-1	953229..953396	-	55	99080733	-	TM1040_0892	-	hypothetical protein
893	 68.12	+2	953503..954951	-	482	99080734	-	TM1040_0893	-	hypothetical protein
894	 56.07	-1	955075..955914	-	279	99080735	-	TM1040_0894	-	ATPase
895	 58.28	0	956048..956524	+	158	99080736	-	TM1040_0895	-	TraR/DksA family transcriptional regulator
896	 63.76	+1	956617..957786	+	389	99080737	-	TM1040_0896	-	monooxygenase, FAD-binding
897	 61.96	0	958089..958895	-	268	99080738	-	TM1040_0897	-	exodeoxyribonuclease III
898	 46.80	-2	959238..959534	-	98	99080739	-	TM1040_0898	-	hypothetical protein
899	 56.43	-1	959653..960717	+	354	99080740	-	TM1040_0899	-	hypothetical protein
900	 61.18	0	960714..961715	+	333	99080741	-	TM1040_0900	-	hypothetical protein
901	 59.26	0	961909..962232	-	107	99080742	-	TM1040_0901	-	HesB/YadR/YfhF
902	 62.03	0	962323..963465	+	380	99080743	-	TM1040_0902	-	deoxyguanosinetriphosphate triphosphohydrolase
903	 59.04	0	963640..965382	+	580	99080744	-	TM1040_0903	-	arginyl-tRNA synthetase
904	 66.35	+1	965892..966827	+	311	99080745	-	TM1040_0904	-	sporulation related
905	 63.94	+1	966827..967888	+	353	99080746	-	TM1040_0905	-	Beta-N-acetylhexosaminidase
906	 60.53	0	967881..968678	+	265	99080747	-	TM1040_0906	-	condensin subunit ScpA
907	 64.76	+1	968678..969358	+	226	99080748	-	TM1040_0907	-	condensin subunit ScpB
908	 68.22	+2	969526..969846	+	106	99080749	-	TM1040_0908	-	hypothetical protein
909	 66.92	+2	969800..970999	-	399	99080750	-	TM1040_0909	-	major facilitator transporter
910	 58.15	0	971071..971610	+	179	99080751	-	TM1040_0910	-	AsnC family transcriptional regulator
911	 63.33	0	971618..972697	-	359	99080752	-	TM1040_0911	-	2'-deoxycytidine 5'-triphosphate deaminase
912	 65.99	+1	973041..975563	-	840	99080753	-	TM1040_0912	-	MerR family transcriptional regulator
913	 55.78	-1	975623..975925	-	100	99080754	-	TM1040_0913	-	integration host factor, alpha subunit
914	 61.52	0	976013..976984	-	323	99080755	-	TM1040_0914	-	3-oxoacyl-[acyl-carrier-protein] synthase III
915	 61.70	0	977000..978127	-	375	99080756	-	TM1040_0915	-	putative glycerol-3-phosphate acyltransferase PlsX
60.41	MEAN

3.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.