version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 784 59.34 0 837950..838672 - 240 99080625 - TM1040_0784 - ERF 785 64.63 +1 838781..839026 - 81 99080626 - TM1040_0785 - hypothetical protein 786 57.78 0 839240..839599 - 119 99080627 - TM1040_0786 - hypothetical protein 787 51.91 -2 839907..840665 - 252 99080628 - TM1040_0787 - hypothetical protein 788 51.12 -2 840662..841195 - 177 99080629 - TM1040_0788 - hypothetical protein 789 56.62 -1 841219..841935 - 238 99080630 - TM1040_0789 - putative phage repressor 790 59.10 0 842213..842701 + 162 99080631 - TM1040_0790 - hypothetical protein 791 64.03 +1 842939..843241 + 100 99080632 - TM1040_0791 - hypothetical protein 792 57.66 0 843244..843765 + 173 99080633 - TM1040_0792 - hypothetical protein 793 61.90 0 843762..844118 + 118 99080634 - TM1040_0793 - endodeoxyribonuclease RusA 794 60.38 0 844130..844861 + 243 99080635 - TM1040_0794 - hypothetical protein 795 62.41 0 844851..845414 + 187 99080636 - TM1040_0795 - hypothetical protein 796 59.58 0 845629..846108 + 159 99080637 - TM1040_0796 - single-strand binding protein 797 60.00 0 846108..846362 + 84 99080638 - TM1040_0797 - hypothetical protein 798 57.90 0 846385..846966 + 193 99080639 - TM1040_0798 - hypothetical protein 799 58.06 0 847447..847725 - 92 99080640 - TM1040_0799 - hypothetical protein 800 58.03 0 847787..848365 + 192 99080641 - TM1040_0800 - terminase small subunit 801 60.91 0 848343..849593 + 416 99080642 - TM1040_0801 - hypothetical protein 802 61.09 0 849590..850969 + 459 99080643 - TM1040_0802 - hypothetical protein 803 58.95 0 850956..852005 + 349 99080644 - TM1040_0803 - phage putative head morphogenesis protein, SPP1 gp7 804 62.72 0 852235..852918 + 227 99080645 - TM1040_0804 - hypothetical protein 805 61.51 0 852931..853899 + 322 99080646 - TM1040_0805 - hypothetical protein 806 52.38 -2 853963..854214 + 83 99080647 - TM1040_0806 - hypothetical protein 807 65.17 +1 854216..854683 + 155 99080648 - TM1040_0807 - hypothetical protein 808 58.22 0 854680..855129 + 149 99080649 - TM1040_0808 - hypothetical protein 809 60.53 0 855126..855500 + 124 99080650 - TM1040_0809 - hypothetical protein 810 61.19 0 855500..855901 + 133 99080651 - TM1040_0810 - hypothetical protein 811 62.16 0 855898..856296 + 132 99080652 - TM1040_0811 - hypothetical protein 812 59.51 0 856572..857060 + 162 99080653 - TM1040_0812 - hypothetical protein 813 56.26 -1 857163..857633 + 156 99080654 - TM1040_0813 - hypothetical protein 814 59.76 0 857759..858004 + 81 99080655 - TM1040_0814 - hypothetical protein 815 59.14 0 858001..858372 - 123 99080656 - TM1040_0815 - XRE family transcriptional regulator 816 54.46 -1 858386..858688 - 100 99080657 - TM1040_0816 - hypothetical protein 817 50.46 -2 858798..859124 - 108 99080658 - TM1040_0817 - hypothetical protein 818 54.50 -1 859121..859564 - 147 99080659 - TM1040_0818 - hypothetical protein 819 60.88 0 859581..863936 + 1451 99080660 - TM1040_0819 - tape measure domain-containing protein 820 56.83 -1 863936..864880 + 314 99080661 - TM1040_0820 - hypothetical protein 821 52.70 -2 864877..866394 + 505 99080662 - TM1040_0821 - hypothetical protein 822 59.34 0 866391..866936 + 181 99080663 - TM1040_0822 - hypothetical protein 823 62.99 0 866908..867261 + 117 99080664 - TM1040_0823 - hypothetical protein 824 57.91 0 867268..867564 + 98 99080665 - TM1040_0824 - hypothetical protein 825 62.30 0 867561..867995 + 144 99080666 - TM1040_0825 - hypothetical protein 826 60.99 0 867997..868806 + 269 99080667 - TM1040_0826 - hypothetical protein 827 58.90 0 868803..869201 + 132 99080668 - TM1040_0827 - hypothetical protein 828 52.03 -2 869373..869987 - 204 99080669 - TM1040_0828 - two component LuxR family transcriptional regulator 829 50.23 -2 870157..870582 - 141 99080670 - TM1040_0829 - response regulator receiver protein 830 51.90 -2 870579..871763 - 394 99080671 - TM1040_0830 - PAS/PAC sensor signal transduction histidine kinase 831 58.77 0 872933..873844 - 303 99080672 - TM1040_0831 - LysR family transcriptional regulator 832 63.77 +1 873956..875506 + 516 99080673 - TM1040_0832 - NADH/ubiquinone/plastoquinone (complex I) 833 64.35 +1 875521..877938 + 805 99080674 - TM1040_0833 - hypothetical protein 834 61.93 0 878016..879683 - 555 99080675 - TM1040_0834 - amidohydrolase 3 835 56.24 -1 879761..880786 - 341 99080676 - TM1040_0835 - extracellular solute-binding protein 836 57.05 -1 880854..881654 - 266 99080677 - TM1040_0836 - binding-protein-dependent transport systems inner membrane component 837 60.13 0 881647..882579 - 310 99080678 - TM1040_0837 - binding-protein-dependent transport systems inner membrane component 838 57.32 0 882584..883696 - 370 99080679 - TM1040_0838 - spermidine/putrescine ABC transporter ATP-binding subunit 839 60.09 0 884254..887037 + 927 99080680 - TM1040_0839 - methyl-accepting chemotaxis sensory transducer 840 49.38 -2 887215..887457 - 80 99080681 - TM1040_0840 - hypothetical protein 841 56.75 -1 887959..888321 + 120 99080682 - TM1040_0841 - hypothetical protein 842 62.31 0 888359..889966 + 535 99080683 - TM1040_0842 - peptidase C1A, papain 843 59.79 0 889986..894845 + 1619 99080684 - TM1040_0843 - OmpA/MotB 844 62.95 0 894888..895775 - 295 99080685 - TM1040_0844 - LysR family transcriptional regulator 845 64.25 +1 895892..897502 + 536 99080686 - TM1040_0845 - glucose-methanol-choline oxidoreductase 846 63.01 0 897499..898674 + 391 99080687 - TM1040_0846 - mandelate racemase/muconate lactonizing-like protein 847 63.97 +1 898671..900155 + 494 99080688 - TM1040_0847 - betaine-aldehyde dehydrogenase 848 60.40 0 900379..901287 - 302 99080689 - TM1040_0848 - LysR family transcriptional regulator 849 60.92 0 901433..902737 + 434 99080690 - TM1040_0849 - extracellular solute-binding protein 850 57.60 0 902829..903710 + 293 99080691 - TM1040_0850 - binding-protein-dependent transport systems inner membrane component 851 56.34 -1 903710..904561 + 283 99080692 - TM1040_0851 - binding-protein-dependent transport systems inner membrane component 852 60.04 0 904570..905625 + 351 99080693 - TM1040_0852 - glycerol-3-phosphate transporter ATP-binding subunit 853 64.24 +1 905622..906569 + 315 99080694 - TM1040_0853 - glycerophosphoryl diester phosphodiesterase 854 62.32 0 906573..907493 + 306 99080695 - TM1040_0854 - haloacid dehalogenase-like hydrolase 855 61.99 0 907552..909198 + 548 99080696 - TM1040_0855 - Na+/Pi-cotransporter 856 63.37 0 909271..909846 + 191 99080697 - TM1040_0856 - phosphoglycerate mutase 857 53.64 -2 910004..910333 - 109 99080698 - TM1040_0857 - hypothetical protein 858 62.53 0 910897..911307 + 136 99080699 - TM1040_0858 - thioesterase superfamily protein 859 61.14 0 911391..912782 - 463 99080700 - TM1040_0859 - hypothetical protein 860 59.59 0 913262..914491 + 409 161899030 - TM1040_0860 - 5-aminolevulinate synthase 861 62.32 0 914620..915837 + 405 99080702 - TM1040_0861 - hypothetical protein 862 60.05 0 915958..917091 + 377 99080703 ispG TM1040_0862 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 863 60.78 0 917168..917932 - 254 99080704 - TM1040_0863 - DSBA oxidoreductase 864 64.06 +1 917929..919350 - 473 99080705 - TM1040_0864 - peptidase M48, Ste24p 865 63.26 0 919373..920518 + 381 99080706 - TM1040_0865 - aminotransferase 866 63.92 +1 920518..921756 + 412 99080707 - TM1040_0866 - N-acetylmuramoyl-L-alanine amidase 867 61.16 0 922143..924650 + 835 99080708 - TM1040_0867 - penicillin-binding protein 1A 868 61.16 0 924764..925888 + 374 99080709 - TM1040_0868 - peptide chain release factor 2 869 62.86 0 926009..927346 - 445 99080710 - TM1040_0869 - major facilitator transporter 870 65.36 +1 927480..928859 + 459 99080711 - TM1040_0870 - amidase 871 59.26 0 928914..929723 + 269 99080712 - TM1040_0871 - hypothetical protein 872 58.68 0 929716..930516 - 266 99080713 - TM1040_0872 - XRE family transcriptional regulator 873 59.52 0 930711..931130 + 139 99080714 - TM1040_0873 - hypothetical protein 874 59.71 0 931317..931877 - 186 99080715 ilvH TM1040_0874 - acetolactate synthase 3 regulatory subunit 875 60.56 0 931943..933694 - 583 99080716 - TM1040_0875 - acetolactate synthase 3 catalytic subunit 876 60.97 0 934294..934995 - 233 99080717 - TM1040_0876 - two component LuxR family transcriptional regulator 877 62.04 0 935016..936440 - 474 99080718 - TM1040_0877 - periplasmic sensor signal transduction histidine kinase 878 62.62 0 936737..937822 + 361 99080719 - TM1040_0878 - twin-arginine translocation pathway signal 879 56.54 -1 937960..938907 + 315 99080720 - TM1040_0879 - TRAP-type mannitol/chloroaromatic compound transport system small permease component-like 880 60.76 0 938924..941278 + 784 99080721 - TM1040_0880 - TRAP C4-dicarboxylate transport system permease DctM subunit 881 64.84 +1 941492..941875 - 127 99080722 - TM1040_0881 - glyoxalase/bleomycin resistance protein/dioxygenase 882 61.21 0 941881..942705 - 274 99080723 - TM1040_0882 - arginyl-tRNA-protein transferase 883 62.27 0 942879..943310 - 143 99080724 - TM1040_0883 - RDD domain-containing protein 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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